Wall clock time and date at job start Sun Mar 29 2020 22:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46752 * 2 1 4 4 H 1.08997 * 109.47229 * 305.71498 * 3 2 1 5 5 C 1.50698 * 109.46906 * 185.71227 * 3 2 1 6 6 H 1.07997 * 120.00248 * 245.15709 * 5 3 2 7 7 C 1.37880 * 119.99780 * 65.16010 * 5 3 2 8 8 N 1.31508 * 120.00120 * 8.34953 * 7 5 3 9 9 Si 1.86808 * 119.99687 * 188.07343 * 7 5 3 10 10 H 1.48494 * 109.47060 * 90.00118 * 9 7 5 11 11 H 1.48506 * 109.46524 * 209.99933 * 9 7 5 12 12 H 1.48499 * 109.47088 * 329.99783 * 9 7 5 13 13 N 1.46496 * 109.47270 * 65.71607 * 3 2 1 14 14 C 1.38999 * 120.00445 * 204.39544 * 13 3 2 15 15 C 1.39339 * 120.09230 * 354.36198 * 14 13 3 16 16 N 1.31915 * 119.89169 * 179.97438 * 15 14 13 17 17 C 1.32269 * 120.08739 * 359.97438 * 16 15 14 18 18 C 1.38156 * 120.19135 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.94517 * 180.02562 * 18 17 16 20 20 N 1.32247 * 120.10993 * 359.78094 * 18 17 16 21 21 H 1.08999 * 109.47551 * 299.59249 * 1 2 3 22 22 H 1.08994 * 109.47536 * 59.60150 * 1 2 3 23 23 H 1.09009 * 109.47169 * 179.60074 * 1 2 3 24 24 H 1.08997 * 109.46921 * 240.00144 * 2 1 3 25 25 H 1.09000 * 109.47053 * 120.00083 * 2 1 3 26 26 H 0.96995 * 119.99883 * 5.02310 * 8 7 5 27 27 H 0.97003 * 120.00430 * 24.39077 * 13 3 2 28 28 H 1.08004 * 120.05641 * 359.95280 * 15 14 13 29 29 H 1.08000 * 119.90586 * 179.97438 * 17 16 15 30 30 H 1.08997 * 109.47276 * 89.99283 * 19 18 17 31 31 H 1.08998 * 109.47195 * 210.00030 * 19 18 17 32 32 H 1.09004 * 109.46853 * 329.99470 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5954 1.9850 -0.8344 5 6 3.5402 1.4449 -0.1414 6 1 4.1581 1.8103 0.6654 7 6 4.1241 0.9806 -1.3010 8 7 3.3763 0.6903 -2.3431 9 14 5.9780 0.7712 -1.3942 10 1 6.3440 -0.5994 -0.9554 11 1 6.4300 0.9803 -2.7933 12 1 6.6337 1.7663 -0.5082 13 7 1.6671 2.0923 1.2590 14 6 1.5491 3.4759 1.3187 15 6 1.8979 4.2551 0.2175 16 7 1.7839 5.5679 0.2783 17 6 1.3388 6.1443 1.3825 18 6 0.9909 5.3751 2.4761 19 6 0.4838 6.0376 3.7311 20 7 1.0976 4.0581 2.4218 21 1 -0.3634 0.5075 0.8936 22 1 -0.3634 0.5200 -0.8863 23 1 -0.3634 -1.0277 -0.0072 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.4236 0.8712 -2.3219 27 1 1.5025 1.5569 2.0510 28 1 2.2614 3.7850 -0.6844 29 1 1.2469 7.2194 1.4293 30 1 -0.6010 6.1303 3.6802 31 1 0.7568 5.4337 4.5965 32 1 0.9291 7.0282 3.8243 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161049142.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:36 Heat of formation + Delta-G solvation = 13.403852 kcal Electronic energy + Delta-G solvation = -14937.203672 eV Core-core repulsion = 12510.442886 eV Total energy + Delta-G solvation = -2426.760785 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.89026 -38.52126 -35.48245 -34.97520 -33.53567 -31.54713 -28.50707 -28.25663 -25.27753 -24.67487 -23.41972 -21.85518 -19.23561 -18.81632 -17.98391 -17.30598 -16.28792 -15.98823 -15.70919 -14.97697 -14.90562 -14.49060 -13.99811 -13.76468 -13.67482 -13.26745 -13.04440 -12.66568 -12.55669 -12.42360 -12.41077 -12.03566 -11.97689 -11.79516 -11.27921 -10.57052 -10.38720 -9.97443 -8.79954 -8.44438 -6.37794 0.10093 0.42940 1.52662 1.58880 1.76929 2.22130 2.54375 2.90551 3.12305 3.52190 3.60042 3.71663 4.18440 4.25142 4.28463 4.38826 4.48364 4.61464 4.76668 4.82808 4.92181 5.02019 5.07712 5.17582 5.24440 5.42026 5.55101 5.84951 5.93035 6.23384 6.53757 6.63356 6.73104 7.14459 7.37968 8.73154 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028762 B = 0.008741 C = 0.007449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.261932 B = 3202.631124 C = 3757.894092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 C 0.272 3.728 4 H 0.011 0.989 5 C -0.618 4.618 6 H 0.037 0.963 7 C -0.012 4.012 8 N -0.923 5.923 9 Si 1.106 2.894 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.687 5.687 14 C 0.363 3.637 15 C -0.036 4.036 16 N -0.425 5.425 17 C -0.046 4.046 18 C 0.126 3.874 19 C -0.091 4.091 20 N -0.533 5.533 21 H 0.053 0.947 22 H 0.040 0.960 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.263 0.737 27 H 0.399 0.601 28 H 0.142 0.858 29 H 0.196 0.804 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.575 6.165 9.296 12.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.161 4.161 3 C 0.168 3.832 4 H 0.029 0.971 5 C -0.657 4.657 6 H 0.055 0.945 7 C -0.212 4.212 8 N -0.559 5.559 9 Si 0.930 3.070 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.315 5.315 14 C 0.122 3.878 15 C -0.204 4.204 16 N -0.138 5.138 17 C -0.207 4.207 18 C -0.017 4.017 19 C -0.149 4.149 20 N -0.259 5.259 21 H 0.072 0.928 22 H 0.059 0.941 23 H 0.085 0.915 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.234 0.766 28 H 0.159 0.841 29 H 0.213 0.787 30 H 0.116 0.884 31 H 0.094 0.906 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.305 5.504 8.088 10.689 hybrid contribution -1.103 0.070 0.865 1.403 sum -5.408 5.574 8.953 11.852 Atomic orbital electron populations 1.21727 0.95270 1.01694 1.00980 1.21728 0.95359 0.97249 1.01717 1.18713 0.93691 0.89923 0.80852 0.97139 1.22520 0.92547 1.47100 1.03497 0.94461 1.26861 1.09912 0.92908 0.91568 1.70878 1.08072 1.45777 1.31186 0.83039 0.70570 0.77381 0.76016 1.19618 1.20922 1.20966 1.44766 1.71731 1.01145 1.13847 1.19442 0.90309 0.87378 0.90641 1.22885 1.07336 0.90138 1.00074 1.68123 1.08174 1.10414 1.27090 1.23692 1.04470 1.02815 0.89737 1.22766 0.92281 0.88411 0.98254 1.20801 1.02492 1.00763 0.90847 1.67889 1.19882 1.12824 1.25262 0.92824 0.94100 0.91504 0.92320 0.92382 0.92624 0.76587 0.84105 0.78683 0.88444 0.90567 0.87338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.83 9.80 71.98 0.71 -4.13 16 2 C -0.12 -5.14 5.18 30.59 0.16 -4.98 16 3 C 0.27 12.82 1.26 44.24 0.06 12.87 16 4 H 0.01 0.57 6.06 -2.39 -0.01 0.55 16 5 C -0.62 -33.02 8.20 25.60 0.21 -32.81 16 6 H 0.04 2.09 7.83 -2.91 -0.02 2.06 16 7 C -0.01 -0.63 5.17 84.66 0.44 -0.19 16 8 N -0.92 -52.50 12.81 21.45 0.27 -52.22 16 9 Si 1.11 49.31 29.91 68.60 2.05 51.36 16 10 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 13 N -0.69 -29.08 4.73 -327.76 -1.55 -30.63 16 14 C 0.36 15.44 7.63 133.04 1.02 16.46 16 15 C -0.04 -1.64 10.21 84.95 0.87 -0.77 16 16 N -0.42 -17.12 10.49 -194.67 -2.04 -19.17 16 17 C -0.05 -1.43 10.86 84.61 0.92 -0.51 16 18 C 0.13 3.81 6.78 42.48 0.29 4.10 16 19 C -0.09 -1.67 10.19 71.24 0.73 -0.95 16 20 N -0.53 -19.95 10.45 -180.75 -1.89 -21.84 16 21 H 0.05 1.75 7.79 -2.39 -0.02 1.74 16 22 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 24 H 0.06 2.78 6.41 -2.39 -0.02 2.76 16 25 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.26 14.97 6.33 -92.71 -0.59 14.39 16 27 H 0.40 15.44 8.72 -92.71 -0.81 14.63 16 28 H 0.14 7.10 6.14 -2.91 -0.02 7.08 16 29 H 0.20 4.28 8.06 -2.91 -0.02 4.25 16 30 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.11 1.32 8.08 -2.38 -0.02 1.30 16 Total: -1.00 -62.88 271.13 2.73 -60.15 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 0.50 Total: 23.25 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: 5.38 Total: -10.90 kcal Atomic # 7 Polarization: -118.66 SS G_CDS: -5.21 Total: -123.86 kcal Atomic # 14 Polarization: 49.31 SS G_CDS: 2.05 Total: 51.36 kcal Total: -62.88 2.73 -60.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049142.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.556 kcal (2) G-P(sol) polarization free energy of solvation -62.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds