Wall clock time and date at job start Sun Mar 29 2020 22:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47302 * 2 1 4 4 H 1.08990 * 109.47216 * 175.20444 * 3 2 1 5 5 C 1.50707 * 109.46943 * 55.20406 * 3 2 1 6 6 H 1.07996 * 120.00027 * 245.75397 * 5 3 2 7 7 C 1.37881 * 119.99621 * 65.75653 * 5 3 2 8 8 N 1.31509 * 120.00200 * 5.53372 * 7 5 3 9 9 Si 1.86799 * 119.99444 * 185.53565 * 7 5 3 10 10 H 1.48508 * 109.46954 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47711 * 300.00042 * 9 7 5 12 12 H 1.48499 * 109.47306 * 60.00356 * 9 7 5 13 13 N 1.46499 * 109.47133 * 295.20944 * 3 2 1 14 14 C 1.38998 * 119.99664 * 279.62804 * 13 3 2 15 15 C 1.39004 * 119.65639 * 4.94513 * 14 13 3 16 16 C 1.38513 * 119.25585 * 179.97438 * 15 14 13 17 17 C 1.38559 * 118.58864 * 359.97438 * 16 15 14 18 18 C 1.38951 * 119.26150 * 0.02562 * 17 16 15 19 19 N 1.38999 * 119.66136 * 179.97438 * 18 17 16 20 20 N 1.32471 * 119.65935 * 184.66906 * 14 13 3 21 21 H 1.08999 * 109.46996 * 64.94467 * 1 2 3 22 22 H 1.09002 * 109.47590 * 184.94650 * 1 2 3 23 23 H 1.08998 * 109.47117 * 304.94716 * 1 2 3 24 24 H 1.08995 * 109.46744 * 240.00267 * 2 1 3 25 25 H 1.08999 * 109.47245 * 120.00231 * 2 1 3 26 26 H 0.96995 * 120.00238 * 355.16325 * 8 7 5 27 27 H 0.96995 * 120.00604 * 99.63026 * 13 3 2 28 28 H 1.07995 * 120.37624 * 359.95709 * 15 14 13 29 29 H 1.08000 * 120.70625 * 180.02562 * 16 15 14 30 30 H 1.07999 * 120.36580 * 180.02562 * 17 16 15 31 31 H 0.97004 * 119.99696 * 0.02562 * 19 18 17 32 32 H 0.96993 * 120.00645 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1265 1.4436 0.0859 5 6 1.4430 2.1863 1.1668 6 1 0.7585 3.0034 0.9931 7 6 1.7709 1.8238 2.4561 8 7 2.6857 0.9030 2.6677 9 14 0.9155 2.6405 3.9020 10 1 1.4429 2.0780 5.1712 11 1 1.1688 4.1032 3.8653 12 1 -0.5457 2.3889 3.8192 13 7 1.6482 2.0990 -1.2497 14 6 2.3845 1.8830 -2.4087 15 6 3.4276 0.9643 -2.3996 16 6 4.1555 0.7552 -3.5594 17 6 3.8152 1.4735 -4.6944 18 6 2.7611 2.3768 -4.6358 19 7 2.4129 3.1022 -5.7692 20 7 2.0813 2.5508 -3.5119 21 1 -0.3633 0.4352 -0.9310 22 1 -0.3634 -1.0238 0.0886 23 1 -0.3633 0.5887 0.8423 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.0794 0.4292 1.9185 27 1 0.8750 2.6844 -1.2683 28 1 3.6680 0.4199 -1.4985 29 1 4.9704 0.0467 -3.5788 30 1 4.3633 1.3327 -5.6142 31 1 2.9049 2.9761 -6.5957 32 1 1.6777 3.7338 -5.7341 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049276.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:55 Heat of formation + Delta-G solvation = 28.689756 kcal Electronic energy + Delta-G solvation = -14918.334998 eV Core-core repulsion = 12492.237059 eV Total energy + Delta-G solvation = -2426.097939 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.63711 -36.73678 -34.27288 -32.67283 -31.51770 -30.37598 -27.78533 -25.86730 -23.98427 -22.37696 -21.86881 -19.69135 -17.64012 -17.05505 -16.64187 -15.35032 -15.08327 -14.46666 -14.01330 -13.79334 -13.51893 -13.22882 -12.81372 -12.50209 -12.13043 -11.61682 -11.14539 -11.08547 -10.84387 -10.28373 -10.17197 -10.13907 -9.92115 -9.50771 -8.94109 -8.72618 -8.42035 -7.98383 -6.71061 -6.48200 -4.22334 2.07460 2.15694 3.38812 3.39238 3.58128 3.68259 4.33032 4.49423 4.60393 5.25275 5.28782 5.70276 5.84280 5.94296 6.08289 6.13781 6.23517 6.36469 6.52398 6.77661 6.86233 6.97430 6.99318 7.13967 7.26616 7.33945 7.50353 7.67876 7.84094 7.99816 8.36509 8.57287 8.75172 8.99679 9.47822 10.88628 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044568 B = 0.007044 C = 0.006829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.095662 B = 3973.969873 C = 4099.176315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.137 4.137 3 C 0.266 3.734 4 H 0.032 0.968 5 C -0.604 4.604 6 H 0.056 0.944 7 C 0.029 3.971 8 N -0.905 5.905 9 Si 1.069 2.931 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.286 1.286 13 N -0.691 5.691 14 C 0.454 3.546 15 C -0.295 4.295 16 C -0.001 4.001 17 C -0.322 4.322 18 C 0.442 3.558 19 N -0.860 5.860 20 N -0.613 5.613 21 H 0.034 0.966 22 H 0.026 0.974 23 H 0.068 0.932 24 H 0.033 0.967 25 H 0.069 0.931 26 H 0.272 0.728 27 H 0.395 0.605 28 H 0.129 0.871 29 H 0.122 0.878 30 H 0.115 0.885 31 H 0.403 0.597 32 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.056 0.435 -11.303 11.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.177 4.177 3 C 0.162 3.838 4 H 0.050 0.950 5 C -0.642 4.642 6 H 0.074 0.926 7 C -0.177 4.177 8 N -0.540 5.540 9 Si 0.897 3.103 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.213 1.213 13 N -0.317 5.317 14 C 0.214 3.786 15 C -0.322 4.322 16 C -0.027 4.027 17 C -0.349 4.349 18 C 0.203 3.797 19 N -0.404 5.404 20 N -0.342 5.342 21 H 0.054 0.946 22 H 0.045 0.955 23 H 0.087 0.913 24 H 0.052 0.948 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.229 0.771 28 H 0.146 0.854 29 H 0.140 0.860 30 H 0.133 0.867 31 H 0.232 0.768 32 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -0.556 0.929 -9.329 9.392 hybrid contribution 0.323 -0.245 -2.115 2.153 sum -0.232 0.685 -11.444 11.467 Atomic orbital electron populations 1.21539 0.96618 0.98959 1.01438 1.22051 0.96440 0.99377 0.99784 1.18886 0.95481 0.89195 0.80194 0.94995 1.21901 1.31463 1.19198 0.91639 0.92583 1.25717 0.95330 0.96736 0.99892 1.70808 1.23613 1.23715 1.35897 0.83529 0.75607 0.75565 0.75606 1.20660 1.21415 1.21278 1.45225 1.30457 1.49885 1.06112 1.18151 0.87683 0.87231 0.85524 1.21224 1.02921 1.07534 1.00508 1.20913 0.95669 0.94661 0.91467 1.20747 1.05614 1.08038 1.00548 1.17838 0.88399 0.87584 0.85868 1.42134 1.40365 1.47633 1.10253 1.66495 1.35399 1.33177 0.99170 0.94649 0.95466 0.91290 0.94826 0.91301 0.91570 0.77061 0.85352 0.86005 0.86692 0.76846 0.77406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.53 37.16 0.35 -2.35 16 2 C -0.14 -3.08 5.23 -26.73 -0.14 -3.22 16 3 C 0.27 6.36 1.58 -69.08 -0.11 6.25 16 4 H 0.03 0.84 6.47 -51.93 -0.34 0.50 16 5 C -0.60 -15.76 7.09 -34.44 -0.24 -16.01 16 6 H 0.06 1.47 7.68 -52.49 -0.40 1.06 16 7 C 0.03 0.77 5.28 -17.82 -0.09 0.68 16 8 N -0.90 -25.57 13.20 55.43 0.73 -24.84 16 9 Si 1.07 24.00 29.91 -169.99 -5.08 18.92 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 13 N -0.69 -15.18 4.82 -55.08 -0.27 -15.45 16 14 C 0.45 9.52 7.58 -155.01 -1.17 8.35 16 15 C -0.30 -5.77 8.45 -39.20 -0.33 -6.11 16 16 C 0.00 -0.02 10.16 -39.36 -0.40 -0.42 16 17 C -0.32 -5.02 9.93 -39.20 -0.39 -5.41 16 18 C 0.44 7.39 7.74 -155.01 -1.20 6.19 16 19 N -0.86 -10.41 9.07 31.11 0.28 -10.12 16 20 N -0.61 -12.07 10.42 -11.62 -0.12 -12.20 16 21 H 0.03 0.71 7.89 -51.93 -0.41 0.30 16 22 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.07 1.56 6.89 -51.93 -0.36 1.20 16 24 H 0.03 0.71 6.74 -51.93 -0.35 0.36 16 25 H 0.07 1.66 6.18 -51.93 -0.32 1.34 16 26 H 0.27 7.61 5.63 -40.82 -0.23 7.38 16 27 H 0.40 8.56 8.58 -40.82 -0.35 8.21 16 28 H 0.13 2.58 5.70 -52.49 -0.30 2.28 16 29 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 30 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 31 H 0.40 3.57 8.82 -40.82 -0.36 3.21 16 32 H 0.40 4.47 8.95 -40.82 -0.37 4.11 16 LS Contribution 265.09 15.07 3.99 3.99 Total: -1.00 -29.03 265.09 -8.04 -37.07 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -3.85 Total: 14.68 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -3.73 Total: -12.06 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: 0.63 Total: -62.61 kcal Atomic # 14 Polarization: 24.00 SS G_CDS: -5.08 Total: 18.92 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.03 -8.04 -37.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049276.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.760 kcal (2) G-P(sol) polarization free energy of solvation -29.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds