Wall clock time and date at job start Sun Mar 29 2020 22:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47302 * 2 1 4 4 H 1.08990 * 109.47216 * 175.20444 * 3 2 1 5 5 C 1.50707 * 109.46943 * 55.20406 * 3 2 1 6 6 H 1.07996 * 120.00027 * 245.75397 * 5 3 2 7 7 C 1.37881 * 119.99621 * 65.75653 * 5 3 2 8 8 N 1.31509 * 120.00200 * 5.53372 * 7 5 3 9 9 Si 1.86799 * 119.99444 * 185.53565 * 7 5 3 10 10 H 1.48508 * 109.46954 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47711 * 300.00042 * 9 7 5 12 12 H 1.48499 * 109.47306 * 60.00356 * 9 7 5 13 13 N 1.46499 * 109.47133 * 295.20944 * 3 2 1 14 14 C 1.38998 * 119.99664 * 279.62804 * 13 3 2 15 15 C 1.39004 * 119.65639 * 4.94513 * 14 13 3 16 16 C 1.38513 * 119.25585 * 179.97438 * 15 14 13 17 17 C 1.38559 * 118.58864 * 359.97438 * 16 15 14 18 18 C 1.38951 * 119.26150 * 0.02562 * 17 16 15 19 19 N 1.38999 * 119.66136 * 179.97438 * 18 17 16 20 20 N 1.32471 * 119.65935 * 184.66906 * 14 13 3 21 21 H 1.08999 * 109.46996 * 64.94467 * 1 2 3 22 22 H 1.09002 * 109.47590 * 184.94650 * 1 2 3 23 23 H 1.08998 * 109.47117 * 304.94716 * 1 2 3 24 24 H 1.08995 * 109.46744 * 240.00267 * 2 1 3 25 25 H 1.08999 * 109.47245 * 120.00231 * 2 1 3 26 26 H 0.96995 * 120.00238 * 355.16325 * 8 7 5 27 27 H 0.96995 * 120.00604 * 99.63026 * 13 3 2 28 28 H 1.07995 * 120.37624 * 359.95709 * 15 14 13 29 29 H 1.08000 * 120.70625 * 180.02562 * 16 15 14 30 30 H 1.07999 * 120.36580 * 180.02562 * 17 16 15 31 31 H 0.97004 * 119.99696 * 0.02562 * 19 18 17 32 32 H 0.96993 * 120.00645 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1265 1.4436 0.0859 5 6 1.4430 2.1863 1.1668 6 1 0.7585 3.0034 0.9931 7 6 1.7709 1.8238 2.4561 8 7 2.6857 0.9030 2.6677 9 14 0.9155 2.6405 3.9020 10 1 1.4429 2.0780 5.1712 11 1 1.1688 4.1032 3.8653 12 1 -0.5457 2.3889 3.8192 13 7 1.6482 2.0990 -1.2497 14 6 2.3845 1.8830 -2.4087 15 6 3.4276 0.9643 -2.3996 16 6 4.1555 0.7552 -3.5594 17 6 3.8152 1.4735 -4.6944 18 6 2.7611 2.3768 -4.6358 19 7 2.4129 3.1022 -5.7692 20 7 2.0813 2.5508 -3.5119 21 1 -0.3633 0.4352 -0.9310 22 1 -0.3634 -1.0238 0.0886 23 1 -0.3633 0.5887 0.8423 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.0794 0.4292 1.9185 27 1 0.8750 2.6844 -1.2683 28 1 3.6680 0.4199 -1.4985 29 1 4.9704 0.0467 -3.5788 30 1 4.3633 1.3327 -5.6142 31 1 2.9049 2.9761 -6.5957 32 1 1.6777 3.7338 -5.7341 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161049276.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:55 Heat of formation + Delta-G solvation = 9.913299 kcal Electronic energy + Delta-G solvation = -14919.149206 eV Core-core repulsion = 12492.237059 eV Total energy + Delta-G solvation = -2426.912147 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.05375 -38.43120 -35.72443 -34.23128 -33.19167 -31.98142 -29.22854 -27.68752 -25.87190 -23.78966 -23.32597 -21.48455 -19.36075 -18.55969 -18.00871 -16.76463 -16.39715 -16.11376 -15.66206 -15.45845 -15.16550 -14.83166 -14.49701 -14.05373 -13.77758 -13.37234 -12.68464 -12.64917 -12.57402 -12.12265 -11.93884 -11.73396 -11.66971 -10.96376 -10.64581 -10.46552 -10.32545 -9.39498 -8.60782 -8.16956 -6.34499 0.71661 0.75185 1.56851 1.62899 1.82188 2.30891 2.59241 3.02548 3.16557 3.22367 4.00306 4.30148 4.34457 4.44338 4.55068 4.60150 4.62536 4.74960 4.96119 5.13375 5.20122 5.26077 5.41657 5.54421 5.60763 5.70857 5.86817 5.98893 6.32482 6.49753 6.55757 6.83035 7.03759 7.42224 7.61017 8.77299 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044568 B = 0.007044 C = 0.006829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.095662 B = 3973.969873 C = 4099.176315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.127 4.127 3 C 0.277 3.723 4 H 0.001 0.999 5 C -0.609 4.609 6 H 0.052 0.948 7 C -0.015 4.015 8 N -0.930 5.930 9 Si 1.112 2.888 10 H -0.285 1.285 11 H -0.277 1.277 12 H -0.269 1.269 13 N -0.701 5.701 14 C 0.431 3.569 15 C -0.323 4.323 16 C 0.003 3.997 17 C -0.309 4.309 18 C 0.430 3.570 19 N -0.839 5.839 20 N -0.632 5.632 21 H 0.040 0.960 22 H 0.047 0.953 23 H 0.050 0.950 24 H 0.042 0.958 25 H 0.048 0.952 26 H 0.263 0.737 27 H 0.393 0.607 28 H 0.111 0.889 29 H 0.155 0.845 30 H 0.155 0.845 31 H 0.421 0.579 32 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.040 0.663 -13.233 13.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.167 4.167 3 C 0.173 3.827 4 H 0.019 0.981 5 C -0.647 4.647 6 H 0.070 0.930 7 C -0.215 4.215 8 N -0.567 5.567 9 Si 0.934 3.066 10 H -0.210 1.210 11 H -0.202 1.202 12 H -0.194 1.194 13 N -0.328 5.328 14 C 0.194 3.806 15 C -0.350 4.350 16 C -0.023 4.023 17 C -0.336 4.336 18 C 0.189 3.811 19 N -0.384 5.384 20 N -0.362 5.362 21 H 0.060 0.940 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.226 0.774 28 H 0.129 0.871 29 H 0.172 0.828 30 H 0.173 0.827 31 H 0.253 0.747 32 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -0.643 1.174 -11.355 11.433 hybrid contribution 0.426 -0.280 -1.750 1.822 sum -0.217 0.894 -13.104 13.137 Atomic orbital electron populations 1.21436 0.95311 1.00004 1.00912 1.21898 0.97441 0.98261 0.99092 1.18538 0.93443 0.89973 0.80748 0.98113 1.22166 1.30943 1.18996 0.92602 0.92996 1.26976 0.95220 0.96674 1.02640 1.70899 1.25125 1.25072 1.35583 0.82980 0.75618 0.75280 0.72706 1.21048 1.20215 1.19434 1.44936 1.31072 1.50704 1.06093 1.18287 0.88353 0.88341 0.85659 1.21239 1.04057 1.08346 1.01361 1.21312 0.95664 0.94814 0.90491 1.21202 1.04632 1.06164 1.01570 1.18282 0.88524 0.88177 0.86073 1.42087 1.40267 1.46442 1.09616 1.66463 1.36456 1.33588 0.99741 0.94040 0.93350 0.93050 0.93948 0.93365 0.92582 0.77356 0.87107 0.82750 0.82744 0.74652 0.76704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 9.53 71.98 0.69 -4.34 16 2 C -0.13 -5.88 5.23 30.59 0.16 -5.72 16 3 C 0.28 13.76 1.58 44.25 0.07 13.83 16 4 H 0.00 0.07 6.47 -2.39 -0.02 0.05 16 5 C -0.61 -32.53 7.09 25.60 0.18 -32.35 16 6 H 0.05 2.76 7.68 -2.91 -0.02 2.74 16 7 C -0.02 -0.82 5.28 84.66 0.45 -0.37 16 8 N -0.93 -53.97 13.20 21.45 0.28 -53.69 16 9 Si 1.11 48.47 29.91 68.60 2.05 50.52 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 12 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 13 N -0.70 -31.60 4.82 -328.17 -1.58 -33.18 16 14 C 0.43 18.23 7.58 133.01 1.01 19.23 16 15 C -0.32 -12.68 8.45 22.52 0.19 -12.49 16 16 C 0.00 0.08 10.16 22.41 0.23 0.31 16 17 C -0.31 -8.53 9.93 22.52 0.22 -8.31 16 18 C 0.43 13.25 7.74 132.99 1.03 14.28 16 19 N -0.84 -17.51 9.07 -55.50 -0.50 -18.01 16 20 N -0.63 -24.36 10.42 -190.69 -1.99 -26.35 16 21 H 0.04 1.66 7.89 -2.39 -0.02 1.64 16 22 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.05 2.32 6.89 -2.39 -0.02 2.31 16 24 H 0.04 1.84 6.74 -2.39 -0.02 1.82 16 25 H 0.05 2.40 6.18 -2.39 -0.01 2.39 16 26 H 0.26 15.34 5.63 -92.71 -0.52 14.82 16 27 H 0.39 17.47 8.58 -92.71 -0.80 16.68 16 28 H 0.11 4.66 5.70 -2.91 -0.02 4.64 16 29 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 30 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 31 H 0.42 5.69 8.82 -92.71 -0.82 4.87 16 32 H 0.40 7.93 8.95 -92.71 -0.83 7.10 16 Total: -1.00 -63.40 265.09 1.45 -61.95 By element: Atomic # 1 Polarization: 35.72 SS G_CDS: -1.03 Total: 34.69 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: 4.22 Total: -15.92 kcal Atomic # 7 Polarization: -127.44 SS G_CDS: -3.79 Total: -131.23 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 2.05 Total: 50.52 kcal Total: -63.40 1.45 -61.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049276.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.861 kcal (2) G-P(sol) polarization free energy of solvation -63.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds