Wall clock time and date at job start Sun Mar 29 2020 22:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46637 * 2 1 4 4 H 1.08999 * 109.47106 * 304.13755 * 3 2 1 5 5 C 1.50707 * 109.46828 * 184.14252 * 3 2 1 6 6 H 1.07999 * 119.99446 * 240.00007 * 5 3 2 7 7 C 1.37878 * 120.00065 * 59.99991 * 5 3 2 8 8 N 1.31510 * 119.99830 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99810 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47064 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47179 * 119.99634 * 9 7 5 12 12 H 1.48492 * 109.47003 * 239.99797 * 9 7 5 13 13 N 1.46500 * 109.47363 * 64.14214 * 3 2 1 14 14 C 1.39313 * 119.99604 * 205.83098 * 13 3 2 15 15 C 1.39087 * 119.62953 * 354.46149 * 14 13 3 16 16 C 1.38282 * 119.16905 * 180.26955 * 15 14 13 17 17 C 1.39415 * 118.44769 * 359.50611 * 16 15 14 18 18 N 1.40047 * 120.40723 * 180.22943 * 17 16 15 19 19 C 1.38635 * 119.18149 * 0.24610 * 17 16 15 20 20 N 1.31990 * 120.75321 * 0.02562 * 19 17 16 21 21 H 1.09001 * 109.47512 * 54.94146 * 1 2 3 22 22 H 1.09000 * 109.46999 * 174.93621 * 1 2 3 23 23 H 1.08999 * 109.47679 * 294.93938 * 1 2 3 24 24 H 1.08996 * 109.47807 * 240.00031 * 2 1 3 25 25 H 1.09001 * 109.47023 * 119.99170 * 2 1 3 26 26 H 0.97000 * 119.99708 * 180.02562 * 8 7 5 27 27 H 0.96994 * 120.00152 * 25.83045 * 13 3 2 28 28 H 1.07997 * 120.41549 * 0.02562 * 15 14 13 29 29 H 1.07998 * 120.77474 * 179.77413 * 16 15 14 30 30 H 0.96998 * 119.99644 * 359.97438 * 18 17 16 31 31 H 0.96994 * 119.99579 * 179.97438 * 18 17 16 32 32 H 1.08001 * 119.61762 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6172 1.9773 -0.8506 5 6 3.5435 1.4439 -0.1026 6 1 4.1377 1.8924 0.6798 7 6 4.1604 0.8725 -1.1953 8 7 3.4367 0.3260 -2.1478 9 14 6.0240 0.8735 -1.3222 10 1 6.6010 1.5447 -0.1297 11 1 6.5164 -0.5259 -1.3897 12 1 6.4363 1.6030 -2.5481 13 7 1.6347 2.1038 1.2429 14 6 1.4861 3.4885 1.2787 15 6 1.8350 4.2466 0.1660 16 6 1.6889 5.6208 0.2140 17 6 1.1845 6.1948 1.3801 18 7 1.0152 7.5820 1.4715 19 6 0.8529 5.3754 2.4481 20 7 1.0105 4.0673 2.3695 21 1 -0.3634 0.5903 -0.8412 22 1 -0.3633 -1.0237 -0.0907 23 1 -0.3634 0.4333 0.9318 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 3.8707 -0.0763 -2.9163 27 1 1.4699 1.5775 2.0408 28 1 2.2190 3.7683 -0.7229 29 1 1.9553 6.2347 -0.6337 30 1 1.2497 8.1497 0.7208 31 1 0.6634 7.9749 2.2855 32 1 0.4611 5.8125 3.3546 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049472.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:58 Heat of formation + Delta-G solvation = 31.330402 kcal Electronic energy + Delta-G solvation = -14835.083355 eV Core-core repulsion = 12409.099923 eV Total energy + Delta-G solvation = -2425.983432 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.45517 -36.29753 -34.29653 -32.23887 -31.30333 -30.76658 -27.49745 -26.08859 -23.17634 -22.97230 -21.36671 -19.73586 -17.10543 -16.64025 -16.40992 -16.01887 -14.95505 -14.47358 -13.81904 -13.60609 -13.29054 -12.92740 -12.58817 -12.38959 -11.84472 -11.57461 -11.28513 -11.16881 -10.87300 -10.68398 -10.13389 -9.92560 -9.75339 -9.48049 -8.88656 -8.75236 -8.44387 -8.16691 -6.27831 -5.94988 -4.16330 2.00110 2.35853 3.25548 3.34297 3.39743 4.17945 4.35441 4.53743 4.74220 5.20362 5.36324 5.48472 5.84827 5.97523 6.16674 6.23100 6.43542 6.51353 6.65128 6.75999 6.85518 6.99802 7.07489 7.20408 7.49123 7.67774 7.85588 7.88366 8.09859 8.21204 8.26953 8.74943 8.90217 9.16266 9.52534 10.94787 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027166 B = 0.008702 C = 0.007194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.443055 B = 3216.710347 C = 3891.360351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.128 4.128 3 C 0.279 3.721 4 H 0.039 0.961 5 C -0.524 4.524 6 H 0.060 0.940 7 C 0.064 3.936 8 N -0.891 5.891 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.712 5.712 14 C 0.377 3.623 15 C -0.178 4.178 16 C -0.112 4.112 17 C 0.077 3.923 18 N -0.888 5.888 19 C 0.068 3.932 20 N -0.531 5.531 21 H 0.044 0.956 22 H 0.034 0.966 23 H 0.038 0.962 24 H 0.106 0.894 25 H 0.038 0.962 26 H 0.262 0.738 27 H 0.387 0.613 28 H 0.144 0.856 29 H 0.120 0.880 30 H 0.390 0.610 31 H 0.390 0.610 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.351 8.081 3.755 9.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C 0.176 3.824 4 H 0.057 0.943 5 C -0.563 4.563 6 H 0.078 0.922 7 C -0.138 4.138 8 N -0.530 5.530 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.342 5.342 14 C 0.138 3.862 15 C -0.204 4.204 16 C -0.142 4.142 17 C -0.028 4.028 18 N -0.432 5.432 19 C -0.093 4.093 20 N -0.249 5.249 21 H 0.063 0.937 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.124 0.876 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.220 0.780 28 H 0.162 0.838 29 H 0.138 0.862 30 H 0.217 0.783 31 H 0.217 0.783 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.475 7.263 4.070 9.451 hybrid contribution 1.211 0.692 -0.540 1.496 sum -3.263 7.955 3.529 9.294 Atomic orbital electron populations 1.21803 0.98802 0.99355 1.00308 1.21856 0.92145 0.99424 1.03219 1.18762 0.93729 0.89006 0.80923 0.94287 1.21677 0.91704 1.37178 1.05773 0.92169 1.24914 0.98320 0.95056 0.95530 1.69859 1.34977 1.38385 1.09747 0.86501 0.85593 0.77709 0.78022 1.19806 1.20981 1.20990 1.45080 1.73143 1.01354 1.14600 1.18342 0.92141 0.86589 0.89091 1.21527 1.05163 0.92970 1.00725 1.20784 1.01973 0.94795 0.96620 1.18443 1.03207 0.85086 0.96016 1.42047 1.77941 1.03471 1.19759 1.21608 1.02590 0.88123 0.96968 1.67010 1.19479 1.11595 1.26819 0.93726 0.94649 0.94269 0.87590 0.94296 0.92777 0.78019 0.83848 0.86168 0.78294 0.78286 0.84506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.73 37.16 0.36 -2.45 16 2 C -0.13 -2.88 5.31 -26.73 -0.14 -3.02 16 3 C 0.28 6.65 1.65 -69.08 -0.11 6.53 16 4 H 0.04 1.01 6.66 -51.93 -0.35 0.67 16 5 C -0.52 -13.81 8.40 -34.44 -0.29 -14.10 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.68 5.29 -17.82 -0.09 1.59 16 8 N -0.89 -24.05 11.29 55.43 0.63 -23.42 16 9 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.71 -15.54 4.74 -55.00 -0.26 -15.80 16 14 C 0.38 8.07 7.63 -154.80 -1.18 6.89 16 15 C -0.18 -3.66 9.08 -39.25 -0.36 -4.01 16 16 C -0.11 -1.94 10.04 -39.13 -0.39 -2.33 16 17 C 0.08 1.22 6.79 -83.52 -0.57 0.66 16 18 N -0.89 -10.11 9.11 32.53 0.30 -9.82 16 19 C 0.07 1.16 11.05 -17.34 -0.19 0.97 16 20 N -0.53 -10.65 10.39 -12.23 -0.13 -10.78 16 21 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.04 0.72 7.87 -51.93 -0.41 0.31 16 24 H 0.11 2.66 5.97 -51.93 -0.31 2.35 16 25 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 27 H 0.39 8.05 8.74 -40.82 -0.36 7.69 16 28 H 0.14 3.19 6.14 -52.49 -0.32 2.86 16 29 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 30 H 0.39 3.76 8.86 -40.82 -0.36 3.40 16 31 H 0.39 3.57 8.85 -40.82 -0.36 3.21 16 32 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 271.11 15.07 4.09 4.09 Total: -1.00 -28.02 271.11 -7.49 -35.52 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -4.13 Total: 13.68 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -2.97 Total: -9.28 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: 0.53 Total: -59.82 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.02 -7.49 -35.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049472.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.847 kcal (2) G-P(sol) polarization free energy of solvation -28.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds