Wall clock time and date at job start Sun Mar 29 2020 22:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46637 * 2 1 4 4 H 1.08999 * 109.47106 * 304.13755 * 3 2 1 5 5 C 1.50707 * 109.46828 * 184.14252 * 3 2 1 6 6 H 1.07999 * 119.99446 * 240.00007 * 5 3 2 7 7 C 1.37878 * 120.00065 * 59.99991 * 5 3 2 8 8 N 1.31510 * 119.99830 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99810 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47064 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47179 * 119.99634 * 9 7 5 12 12 H 1.48492 * 109.47003 * 239.99797 * 9 7 5 13 13 N 1.46500 * 109.47363 * 64.14214 * 3 2 1 14 14 C 1.39313 * 119.99604 * 205.83098 * 13 3 2 15 15 C 1.39087 * 119.62953 * 354.46149 * 14 13 3 16 16 C 1.38282 * 119.16905 * 180.26955 * 15 14 13 17 17 C 1.39415 * 118.44769 * 359.50611 * 16 15 14 18 18 N 1.40047 * 120.40723 * 180.22943 * 17 16 15 19 19 C 1.38635 * 119.18149 * 0.24610 * 17 16 15 20 20 N 1.31990 * 120.75321 * 0.02562 * 19 17 16 21 21 H 1.09001 * 109.47512 * 54.94146 * 1 2 3 22 22 H 1.09000 * 109.46999 * 174.93621 * 1 2 3 23 23 H 1.08999 * 109.47679 * 294.93938 * 1 2 3 24 24 H 1.08996 * 109.47807 * 240.00031 * 2 1 3 25 25 H 1.09001 * 109.47023 * 119.99170 * 2 1 3 26 26 H 0.97000 * 119.99708 * 180.02562 * 8 7 5 27 27 H 0.96994 * 120.00152 * 25.83045 * 13 3 2 28 28 H 1.07997 * 120.41549 * 0.02562 * 15 14 13 29 29 H 1.07998 * 120.77474 * 179.77413 * 16 15 14 30 30 H 0.96998 * 119.99644 * 359.97438 * 18 17 16 31 31 H 0.96994 * 119.99579 * 179.97438 * 18 17 16 32 32 H 1.08001 * 119.61762 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6172 1.9773 -0.8506 5 6 3.5435 1.4439 -0.1026 6 1 4.1377 1.8924 0.6798 7 6 4.1604 0.8725 -1.1953 8 7 3.4367 0.3260 -2.1478 9 14 6.0240 0.8735 -1.3222 10 1 6.6010 1.5447 -0.1297 11 1 6.5164 -0.5259 -1.3897 12 1 6.4363 1.6030 -2.5481 13 7 1.6347 2.1038 1.2429 14 6 1.4861 3.4885 1.2787 15 6 1.8350 4.2466 0.1660 16 6 1.6889 5.6208 0.2140 17 6 1.1845 6.1948 1.3801 18 7 1.0152 7.5820 1.4715 19 6 0.8529 5.3754 2.4481 20 7 1.0105 4.0673 2.3695 21 1 -0.3634 0.5903 -0.8412 22 1 -0.3633 -1.0237 -0.0907 23 1 -0.3634 0.4333 0.9318 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 3.8707 -0.0763 -2.9163 27 1 1.4699 1.5775 2.0408 28 1 2.2190 3.7683 -0.7229 29 1 1.9553 6.2347 -0.6337 30 1 1.2497 8.1497 0.7208 31 1 0.6634 7.9749 2.2855 32 1 0.4611 5.8125 3.3546 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161049472.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:58 Heat of formation + Delta-G solvation = 12.717481 kcal Electronic energy + Delta-G solvation = -14835.890471 eV Core-core repulsion = 12409.099923 eV Total energy + Delta-G solvation = -2426.790549 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.91094 -37.97038 -35.70857 -34.09513 -32.87930 -32.25183 -29.15035 -27.74967 -24.93679 -24.47926 -22.85899 -21.48721 -18.63374 -18.40910 -17.94087 -17.34487 -16.68830 -15.95154 -15.43020 -15.19721 -14.84129 -14.66361 -14.20178 -13.80018 -13.44710 -13.21421 -13.11302 -12.87994 -12.56276 -12.34351 -12.03468 -11.69976 -11.56673 -11.23630 -10.49583 -10.40642 -10.23121 -9.65181 -8.15337 -7.52008 -6.24315 0.55579 0.92315 1.39146 1.42628 1.53054 2.40914 2.77956 3.15305 3.26646 3.26727 4.00325 4.15525 4.43612 4.49219 4.50546 4.61821 4.76668 5.04082 5.13244 5.21869 5.27211 5.35057 5.40454 5.58970 5.70873 5.79921 5.95451 6.31052 6.47167 6.71005 6.86884 7.18756 7.23811 7.41707 7.64491 8.91764 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027166 B = 0.008702 C = 0.007194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.443055 B = 3216.710347 C = 3891.360351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.123 4.123 3 C 0.291 3.709 4 H 0.012 0.988 5 C -0.536 4.536 6 H 0.042 0.958 7 C 0.024 3.976 8 N -0.911 5.911 9 Si 0.950 3.050 10 H -0.278 1.278 11 H -0.277 1.277 12 H -0.279 1.279 13 N -0.718 5.718 14 C 0.347 3.653 15 C -0.201 4.201 16 C -0.116 4.116 17 C 0.098 3.902 18 N -0.867 5.867 19 C 0.060 3.940 20 N -0.541 5.541 21 H 0.036 0.964 22 H 0.056 0.944 23 H 0.047 0.953 24 H 0.080 0.920 25 H 0.039 0.961 26 H 0.264 0.736 27 H 0.389 0.611 28 H 0.115 0.885 29 H 0.145 0.855 30 H 0.403 0.597 31 H 0.406 0.594 32 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.688 9.828 4.614 11.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.161 4.161 3 C 0.187 3.813 4 H 0.030 0.970 5 C -0.575 4.575 6 H 0.060 0.940 7 C -0.176 4.176 8 N -0.550 5.550 9 Si 0.776 3.224 10 H -0.203 1.203 11 H -0.203 1.203 12 H -0.205 1.205 13 N -0.349 5.349 14 C 0.110 3.890 15 C -0.227 4.227 16 C -0.146 4.146 17 C -0.009 4.009 18 N -0.412 5.412 19 C -0.102 4.102 20 N -0.259 5.259 21 H 0.055 0.945 22 H 0.075 0.925 23 H 0.066 0.934 24 H 0.099 0.901 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.222 0.778 28 H 0.133 0.867 29 H 0.163 0.837 30 H 0.232 0.768 31 H 0.236 0.764 32 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.828 9.072 4.943 11.404 hybrid contribution 1.264 0.363 -0.746 1.512 sum -3.564 9.435 4.196 10.924 Atomic orbital electron populations 1.21664 0.96261 1.00690 1.00438 1.21697 0.94397 0.98153 1.01890 1.18405 0.92252 0.89500 0.81099 0.97010 1.21824 0.93127 1.37110 1.05451 0.93997 1.25534 1.01939 0.94845 0.95280 1.69959 1.36273 1.38755 1.10035 0.85631 0.81209 0.77805 0.77705 1.20260 1.20301 1.20480 1.44781 1.74423 1.01901 1.13826 1.18448 0.94071 0.86384 0.90071 1.21392 1.06921 0.94560 0.99820 1.21011 1.01732 0.93707 0.98182 1.18470 1.00700 0.86948 0.94743 1.41995 1.76541 1.01601 1.21071 1.22248 1.02056 0.87307 0.98596 1.67007 1.19311 1.13274 1.26262 0.94497 0.92452 0.93351 0.90140 0.94217 0.92622 0.77780 0.86700 0.83745 0.76766 0.76407 0.80982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.14 9.73 71.98 0.70 -4.44 16 2 C -0.12 -5.66 5.31 30.60 0.16 -5.49 16 3 C 0.29 14.46 1.65 44.25 0.07 14.54 16 4 H 0.01 0.66 6.66 -2.39 -0.02 0.65 16 5 C -0.54 -29.22 8.40 25.60 0.22 -29.01 16 6 H 0.04 2.39 7.81 -2.91 -0.02 2.36 16 7 C 0.02 1.28 5.29 84.66 0.45 1.73 16 8 N -0.91 -50.30 11.29 21.45 0.24 -50.06 16 9 Si 0.95 43.38 29.54 68.60 2.03 45.40 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 12 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 13 N -0.72 -32.29 4.74 -327.91 -1.56 -33.85 16 14 C 0.35 15.07 7.63 132.97 1.01 16.09 16 15 C -0.20 -8.45 9.08 22.48 0.20 -8.24 16 16 C -0.12 -3.86 10.04 22.56 0.23 -3.63 16 17 C 0.10 2.82 6.79 38.21 0.26 3.08 16 18 N -0.87 -16.04 9.11 -50.99 -0.46 -16.51 16 19 C 0.06 1.87 11.05 84.76 0.94 2.81 16 20 N -0.54 -21.21 10.39 -192.61 -2.00 -23.21 16 21 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 23 H 0.05 1.76 7.87 -2.39 -0.02 1.74 16 24 H 0.08 4.15 5.97 -2.39 -0.01 4.13 16 25 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 27 H 0.39 16.56 8.74 -92.71 -0.81 15.75 16 28 H 0.11 5.42 6.14 -2.91 -0.02 5.41 16 29 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 30 H 0.40 6.00 8.86 -92.71 -0.82 5.18 16 31 H 0.41 5.48 8.85 -92.71 -0.82 4.66 16 32 H 0.17 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -61.31 271.11 1.19 -60.12 By element: Atomic # 1 Polarization: 31.97 SS G_CDS: -1.30 Total: 30.68 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: 4.24 Total: -12.58 kcal Atomic # 7 Polarization: -119.84 SS G_CDS: -3.78 Total: -123.62 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -61.31 1.19 -60.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049472.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.836 kcal (2) G-P(sol) polarization free energy of solvation -61.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds