Wall clock time and date at job start Sun Mar 29 2020 22:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46742 * 2 1 4 4 H 1.08994 * 109.47547 * 305.20085 * 3 2 1 5 5 C 1.50705 * 109.47168 * 185.19666 * 3 2 1 6 6 H 1.08000 * 119.99828 * 245.19730 * 5 3 2 7 7 C 1.37877 * 119.99885 * 65.19251 * 5 3 2 8 8 N 1.31516 * 119.99719 * 7.94418 * 7 5 3 9 9 Si 1.86800 * 120.00116 * 187.93604 * 7 5 3 10 10 H 1.48499 * 109.46601 * 90.00512 * 9 7 5 11 11 H 1.48501 * 109.47081 * 210.00400 * 9 7 5 12 12 H 1.48492 * 109.47163 * 330.00710 * 9 7 5 13 13 N 1.46508 * 109.47275 * 65.20253 * 3 2 1 14 14 C 1.38999 * 119.99311 * 262.47515 * 13 3 2 15 15 C 1.39338 * 120.09898 * 355.52009 * 14 13 3 16 16 N 1.31918 * 119.88833 * 179.97438 * 15 14 13 17 17 C 1.32269 * 120.08958 * 0.02562 * 16 15 14 18 18 C 1.50705 * 119.90474 * 179.97438 * 17 16 15 19 19 C 1.38160 * 120.19533 * 359.96911 * 17 16 15 20 20 N 1.32251 * 120.10316 * 359.79129 * 19 17 16 21 21 H 1.09004 * 109.47123 * 183.06310 * 1 2 3 22 22 H 1.09001 * 109.47299 * 303.06338 * 1 2 3 23 23 H 1.08998 * 109.47045 * 63.06700 * 1 2 3 24 24 H 1.08994 * 109.47531 * 240.00026 * 2 1 3 25 25 H 1.09002 * 109.47147 * 119.99657 * 2 1 3 26 26 H 0.96998 * 120.00436 * 4.97939 * 8 7 5 27 27 H 0.96996 * 120.00067 * 82.47071 * 13 3 2 28 28 H 1.07993 * 120.05451 * 359.96527 * 15 14 13 29 29 H 1.09005 * 109.47344 * 89.99760 * 18 17 16 30 30 H 1.08993 * 109.47153 * 209.99258 * 18 17 16 31 31 H 1.08992 * 109.47091 * 329.99589 * 18 17 16 32 32 H 1.07997 * 119.94735 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6025 1.9826 -0.8397 5 6 3.5414 1.4446 -0.1287 6 1 4.1524 1.8119 0.6826 7 6 4.1351 0.9775 -1.2821 8 7 3.3954 0.6771 -2.3272 9 14 5.9900 0.7715 -1.3604 10 1 6.3553 -0.5970 -0.9142 11 1 6.4524 0.9768 -2.7566 12 1 6.6370 1.7707 -0.4728 13 7 1.6564 2.0961 1.2539 14 6 0.5234 2.8999 1.3003 15 6 -0.1963 3.1611 0.1361 16 7 -1.2713 3.9241 0.1851 17 6 -1.6656 4.4412 1.3369 18 6 -2.8940 5.3128 1.3879 19 6 -0.9547 4.1845 2.4934 20 7 0.1214 3.4167 2.4540 21 1 -0.3633 -1.0262 0.0549 22 1 -0.3634 0.5607 0.8612 23 1 -0.3633 0.4655 -0.9162 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.4414 0.8518 -2.3125 27 1 2.1932 1.9678 2.0516 28 1 0.1255 2.7396 -0.8046 29 1 -3.7716 4.6934 1.5735 30 1 -2.7884 6.0428 2.1903 31 1 -3.0105 5.8323 0.4369 32 1 -1.2805 4.6084 3.4318 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161050208.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:39 Heat of formation + Delta-G solvation = 15.763026 kcal Electronic energy + Delta-G solvation = -14959.334068 eV Core-core repulsion = 12532.675584 eV Total energy + Delta-G solvation = -2426.658484 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.97584 -38.58459 -35.71158 -34.53807 -33.23193 -32.31319 -28.96838 -27.05041 -25.82493 -24.97760 -23.23654 -21.94302 -19.66554 -18.57124 -18.11915 -16.82386 -16.26365 -15.95458 -15.71501 -15.39140 -15.04354 -14.46443 -14.02007 -13.86747 -13.66831 -13.25469 -13.09297 -12.61140 -12.52680 -12.43338 -12.37855 -12.03384 -11.95229 -11.80009 -11.23512 -10.58831 -10.51896 -9.98726 -8.70811 -8.52183 -6.41807 0.07014 0.37857 1.55763 1.62001 1.80001 2.22833 2.56607 2.85996 3.11579 3.39384 3.60859 3.63750 4.14144 4.23711 4.28304 4.30756 4.43502 4.56295 4.72126 4.89275 4.98527 4.99889 5.08014 5.09633 5.21907 5.46883 5.53983 5.77929 5.80829 6.20063 6.47066 6.68594 6.71184 7.08387 7.36279 8.70671 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044534 B = 0.007101 C = 0.006872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.580592 B = 3941.964505 C = 4073.560651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.125 4.125 3 C 0.268 3.732 4 H 0.022 0.978 5 C -0.625 4.625 6 H 0.052 0.948 7 C -0.014 4.014 8 N -0.923 5.923 9 Si 1.115 2.885 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.688 5.688 14 C 0.350 3.650 15 C -0.031 4.031 16 N -0.422 5.422 17 C -0.022 4.022 18 C -0.079 4.079 19 C 0.109 3.891 20 N -0.531 5.531 21 H 0.061 0.939 22 H 0.038 0.962 23 H 0.045 0.955 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.263 0.737 27 H 0.399 0.601 28 H 0.148 0.852 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.598 4.989 7.878 12.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.165 4.165 3 C 0.164 3.836 4 H 0.040 0.960 5 C -0.663 4.663 6 H 0.070 0.930 7 C -0.214 4.214 8 N -0.559 5.559 9 Si 0.938 3.062 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.315 5.315 14 C 0.110 3.890 15 C -0.199 4.199 16 N -0.137 5.137 17 C -0.164 4.164 18 C -0.137 4.137 19 C -0.053 4.053 20 N -0.255 5.255 21 H 0.080 0.920 22 H 0.057 0.943 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.234 0.766 28 H 0.165 0.835 29 H 0.102 0.898 30 H 0.120 0.880 31 H 0.086 0.914 32 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -7.301 4.339 6.709 10.823 hybrid contribution -0.823 0.268 0.978 1.306 sum -8.124 4.606 7.687 12.096 Atomic orbital electron populations 1.21718 0.96031 1.01202 1.00342 1.21893 0.94769 0.98823 1.00971 1.18763 0.94445 0.89073 0.81356 0.95991 1.22385 0.91736 1.47708 1.04494 0.93015 1.27033 1.10466 0.92571 0.91360 1.70873 1.08338 1.45517 1.31205 0.82930 0.69699 0.77508 0.76099 1.19777 1.21089 1.20152 1.44878 1.24019 1.48701 1.13947 1.19550 0.88723 0.89898 0.90823 1.22961 0.95555 1.03187 0.98216 1.68031 1.11384 1.05125 1.29170 1.22530 1.01755 1.02766 0.89394 1.20550 0.91575 0.97553 1.04029 1.23938 0.88747 0.91911 1.00677 1.68047 1.17575 1.14037 1.25813 0.92032 0.94299 0.93632 0.92637 0.93257 0.92630 0.76636 0.83483 0.89770 0.87994 0.91434 0.77799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.16 8.81 71.98 0.63 -4.52 16 2 C -0.13 -5.55 5.32 30.59 0.16 -5.38 16 3 C 0.27 12.71 1.77 44.25 0.08 12.79 16 4 H 0.02 1.15 4.97 -2.39 -0.01 1.14 16 5 C -0.63 -32.96 8.70 25.60 0.22 -32.73 16 6 H 0.05 2.73 7.83 -2.91 -0.02 2.71 16 7 C -0.01 -0.73 5.18 84.65 0.44 -0.29 16 8 N -0.92 -52.45 12.81 21.45 0.27 -52.17 16 9 Si 1.12 47.86 29.91 68.60 2.05 49.91 16 10 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 11 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 13 N -0.69 -29.32 4.87 -327.72 -1.60 -30.91 16 14 C 0.35 14.07 6.42 133.04 0.85 14.92 16 15 C -0.03 -1.24 9.27 84.94 0.79 -0.45 16 16 N -0.42 -15.40 10.41 -182.75 -1.90 -17.30 16 17 C -0.02 -0.64 6.78 42.48 0.29 -0.35 16 18 C -0.08 -1.46 10.19 71.24 0.73 -0.74 16 19 C 0.11 3.07 10.86 84.61 0.92 3.99 16 20 N -0.53 -19.08 10.53 -192.64 -2.03 -21.11 16 21 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 22 H 0.04 1.48 6.35 -2.39 -0.02 1.47 16 23 H 0.04 1.73 7.88 -2.39 -0.02 1.71 16 24 H 0.06 2.71 6.39 -2.39 -0.02 2.69 16 25 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.26 14.99 6.29 -92.71 -0.58 14.41 16 27 H 0.40 16.46 8.85 -92.71 -0.82 15.64 16 28 H 0.15 6.33 5.56 -2.91 -0.02 6.31 16 29 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.10 1.23 8.08 -2.39 -0.02 1.21 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.21 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -61.46 266.00 2.41 -59.06 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 0.50 Total: 25.30 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: 5.11 Total: -12.77 kcal Atomic # 7 Polarization: -116.24 SS G_CDS: -5.25 Total: -121.50 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.05 Total: 49.91 kcal Total: -61.46 2.41 -59.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161050208.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.819 kcal (2) G-P(sol) polarization free energy of solvation -61.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds