Wall clock time and date at job start Sun Mar 29 2020 22:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 N 1.46495 * 109.46909 * 175.00315 * 4 2 1 6 6 C 1.37939 * 120.00253 * 179.97438 * 5 4 2 7 7 N 1.32626 * 120.23133 * 359.71891 * 6 5 4 8 8 C 1.32247 * 120.08622 * 179.76592 * 7 6 5 9 9 C 1.38975 * 120.56199 * 0.51771 * 8 7 6 10 10 N 1.31710 * 120.48094 * 359.74127 * 9 8 7 11 11 C 1.33915 * 119.89333 * 359.97438 * 10 9 8 12 12 C 1.40819 * 120.27575 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00484 * 179.97438 * 12 11 10 14 14 C 1.40122 * 120.00143 * 359.97438 * 12 11 10 15 15 N 1.30740 * 119.99884 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99948 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47126 * 90.00130 * 16 14 12 18 18 H 1.48500 * 109.46794 * 209.99727 * 16 14 12 19 19 H 1.48500 * 109.47358 * 329.99797 * 16 14 12 20 20 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 21 21 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 23 23 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 24 24 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 25 25 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 26 26 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 27 27 H 1.09001 * 109.47096 * 295.00066 * 4 2 1 28 28 H 1.08994 * 109.47065 * 55.00225 * 4 2 1 29 29 H 0.97000 * 120.00271 * 359.97438 * 5 4 2 30 30 H 1.07991 * 119.71812 * 180.27524 * 8 7 6 31 31 H 1.07997 * 119.75511 * 179.76262 * 9 8 7 32 32 H 0.96998 * 120.00018 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1890 -1.4424 2.2145 7 7 3.5347 -1.9363 3.2570 8 6 4.1977 -2.5304 4.2350 9 6 5.5827 -2.6348 4.1882 10 7 6.2553 -2.1477 3.1659 11 6 5.6024 -1.5473 2.1626 12 6 6.3134 -1.0241 1.0654 13 1 5.7824 -0.5411 0.2585 14 6 7.7099 -1.1300 1.0206 15 7 8.3528 -1.7142 1.9976 16 14 8.6530 -0.4353 -0.4345 17 1 9.0174 0.9777 -0.1592 18 1 9.8876 -1.2319 -0.6500 19 1 7.8038 -0.4995 -1.6511 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.6766 1.9563 0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.7517 -0.1584 2.1369 28 1 1.6055 -1.7198 1.2950 29 1 3.9824 -0.4627 0.4315 30 1 3.6586 -2.9344 5.0790 31 1 6.1113 -3.1193 4.9958 32 1 9.3196 -1.7872 1.9668 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161645149.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:21 Heat of formation + Delta-G solvation = 31.694917 kcal Electronic energy + Delta-G solvation = -14836.104505 eV Core-core repulsion = 12410.136880 eV Total energy + Delta-G solvation = -2425.967625 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.94552 -36.70020 -33.92801 -33.40924 -31.38091 -29.03852 -27.03214 -25.93279 -25.11719 -21.93995 -21.17895 -19.89692 -17.56598 -16.54695 -15.89264 -15.11420 -14.79430 -14.09507 -13.94721 -13.49988 -13.09078 -12.85549 -12.47021 -12.19876 -12.02827 -11.81764 -11.40888 -11.31003 -10.87152 -10.74260 -10.64454 -10.39925 -10.18207 -9.79000 -9.33404 -9.31063 -8.51624 -7.30314 -6.73282 -6.37912 -4.38438 2.69383 3.06141 3.07768 3.10574 3.29482 3.90509 4.39051 4.77073 5.06207 5.10501 5.27975 5.72513 5.79942 5.86345 5.92550 5.98716 6.06013 6.12353 6.21244 6.23887 6.35134 6.41788 6.55911 6.62131 6.80977 7.04367 7.11133 7.70578 8.01485 8.17703 8.46453 8.66530 8.92469 9.52192 10.04426 10.27553 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022509 B = 0.010000 C = 0.007102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.659892 B = 2799.435055 C = 3941.471399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 C -0.146 4.146 4 C 0.149 3.851 5 N -0.724 5.724 6 C 0.263 3.737 7 N -0.502 5.502 8 C -0.084 4.084 9 C 0.027 3.973 10 N -0.449 5.449 11 C 0.193 3.807 12 C -0.424 4.424 13 H 0.082 0.918 14 C 0.068 3.932 15 N -0.715 5.715 16 Si 0.907 3.093 17 H -0.269 1.269 18 H -0.276 1.276 19 H -0.261 1.261 20 H 0.053 0.947 21 H 0.054 0.946 22 H 0.055 0.945 23 H 0.072 0.928 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.402 0.598 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.963 3.594 -4.627 9.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 C -0.203 4.203 4 C 0.024 3.976 5 N -0.366 5.366 6 C 0.017 3.983 7 N -0.223 5.223 8 C -0.238 4.238 9 C -0.136 4.136 10 N -0.167 5.167 11 C 0.059 3.941 12 C -0.458 4.458 13 H 0.100 0.900 14 C -0.157 4.157 15 N -0.337 5.337 16 Si 0.731 3.269 17 H -0.194 1.194 18 H -0.201 1.201 19 H -0.185 1.185 20 H 0.072 0.928 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.090 0.910 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.239 0.761 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.898 3.431 -4.325 8.835 hybrid contribution 0.610 0.331 -0.715 0.997 sum -6.288 3.762 -5.041 8.894 Atomic orbital electron populations 1.21740 0.94880 1.01727 1.01557 1.21363 0.95885 0.96750 0.98938 1.21829 1.01677 0.95630 1.01179 1.20980 0.82059 0.98745 0.95849 1.43715 1.04387 1.65708 1.22776 1.19324 0.89940 0.98965 0.90118 1.67324 1.39731 1.13352 1.01927 1.22270 0.92933 1.09363 0.99266 1.23136 0.92250 1.00130 0.98067 1.69482 1.34861 1.11884 1.00442 1.19050 0.87031 0.94069 0.93991 1.19214 0.91527 1.31832 1.03248 0.90041 1.26010 0.98256 0.94489 0.96938 1.70103 1.08850 1.26748 1.28005 0.86339 0.79380 0.79559 0.81652 1.19411 1.20082 1.18524 0.92801 0.92645 0.92615 0.90990 0.92749 0.92155 0.93160 0.93356 0.93452 0.76113 0.86063 0.85908 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.19 37.16 0.34 -1.24 16 2 C -0.11 -1.49 2.96 -90.62 -0.27 -1.76 16 3 C -0.15 -1.87 9.07 37.16 0.34 -1.54 16 4 C 0.15 2.61 5.08 -4.05 -0.02 2.59 16 5 N -0.72 -15.09 5.33 -59.90 -0.32 -15.41 16 6 C 0.26 6.64 7.51 -154.82 -1.16 5.48 16 7 N -0.50 -12.64 9.71 -11.67 -0.11 -12.75 16 8 C -0.08 -2.04 11.22 -17.10 -0.19 -2.23 16 9 C 0.03 0.68 11.21 -17.33 -0.19 0.48 16 10 N -0.45 -12.66 8.03 -10.79 -0.09 -12.74 16 11 C 0.19 5.29 6.56 -84.61 -0.56 4.74 16 12 C -0.42 -10.97 8.89 -37.90 -0.34 -11.31 16 13 H 0.08 1.90 6.12 -52.49 -0.32 1.58 16 14 C 0.07 1.71 5.50 -17.31 -0.10 1.62 16 15 N -0.71 -18.97 11.48 55.56 0.64 -18.34 16 16 Si 0.91 18.15 29.56 -169.99 -5.03 13.12 16 17 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 18 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 19 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 20 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.84 7.18 -51.93 -0.37 0.47 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.40 7.89 5.64 -40.82 -0.23 7.66 16 30 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 31 H 0.12 2.72 8.06 -52.49 -0.42 2.30 16 32 H 0.27 6.58 8.29 -40.82 -0.34 6.24 16 LS Contribution 271.11 15.07 4.09 4.09 Total: -1.00 -29.90 271.11 -7.25 -37.15 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -4.29 Total: 8.05 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -2.15 Total: -3.16 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: 0.12 Total: -59.25 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.12 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.90 -7.25 -37.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161645149.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.850 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds