Wall clock time and date at job start Sun Mar 29 2020 22:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 N 1.46495 * 109.46909 * 175.00315 * 4 2 1 6 6 C 1.37939 * 120.00253 * 179.97438 * 5 4 2 7 7 N 1.32626 * 120.23133 * 359.71891 * 6 5 4 8 8 C 1.32247 * 120.08622 * 179.76592 * 7 6 5 9 9 C 1.38975 * 120.56199 * 0.51771 * 8 7 6 10 10 N 1.31710 * 120.48094 * 359.74127 * 9 8 7 11 11 C 1.33915 * 119.89333 * 359.97438 * 10 9 8 12 12 C 1.40819 * 120.27575 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00484 * 179.97438 * 12 11 10 14 14 C 1.40122 * 120.00143 * 359.97438 * 12 11 10 15 15 N 1.30740 * 119.99884 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99948 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47126 * 90.00130 * 16 14 12 18 18 H 1.48500 * 109.46794 * 209.99727 * 16 14 12 19 19 H 1.48500 * 109.47358 * 329.99797 * 16 14 12 20 20 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 21 21 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 23 23 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 24 24 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 25 25 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 26 26 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 27 27 H 1.09001 * 109.47096 * 295.00066 * 4 2 1 28 28 H 1.08994 * 109.47065 * 55.00225 * 4 2 1 29 29 H 0.97000 * 120.00271 * 359.97438 * 5 4 2 30 30 H 1.07991 * 119.71812 * 180.27524 * 8 7 6 31 31 H 1.07997 * 119.75511 * 179.76262 * 9 8 7 32 32 H 0.96998 * 120.00018 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1890 -1.4424 2.2145 7 7 3.5347 -1.9363 3.2570 8 6 4.1977 -2.5304 4.2350 9 6 5.5827 -2.6348 4.1882 10 7 6.2553 -2.1477 3.1659 11 6 5.6024 -1.5473 2.1626 12 6 6.3134 -1.0241 1.0654 13 1 5.7824 -0.5411 0.2585 14 6 7.7099 -1.1300 1.0206 15 7 8.3528 -1.7142 1.9976 16 14 8.6530 -0.4353 -0.4345 17 1 9.0174 0.9777 -0.1592 18 1 9.8876 -1.2319 -0.6500 19 1 7.8038 -0.4995 -1.6511 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.6766 1.9563 0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.7517 -0.1584 2.1369 28 1 1.6055 -1.7198 1.2950 29 1 3.9824 -0.4627 0.4315 30 1 3.6586 -2.9344 5.0790 31 1 6.1113 -3.1193 4.9958 32 1 9.3196 -1.7872 1.9668 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161645149.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:21 Heat of formation + Delta-G solvation = 13.123034 kcal Electronic energy + Delta-G solvation = -14836.909843 eV Core-core repulsion = 12410.136880 eV Total energy + Delta-G solvation = -2426.772963 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.84123 -38.08060 -35.82970 -34.96679 -33.30000 -30.81771 -28.04351 -27.80688 -26.64477 -23.82465 -23.02326 -21.11129 -19.48694 -18.29902 -17.66322 -16.81976 -16.21151 -15.82761 -15.49890 -15.04897 -14.68774 -14.32192 -13.91575 -13.80289 -13.29665 -13.18827 -12.94794 -12.85561 -12.38053 -11.94598 -11.91820 -11.87696 -11.62499 -11.56156 -11.26198 -11.14079 -10.40311 -9.23981 -8.58528 -8.26436 -6.33045 0.80508 1.26049 1.43061 1.55248 1.58104 2.22873 2.75322 2.88325 3.89365 3.92075 4.05354 4.14215 4.29347 4.34792 4.53778 4.69651 4.79269 4.85068 4.91971 4.97639 5.03958 5.11329 5.13311 5.22559 5.24800 5.45456 5.47934 5.81933 6.12670 6.31868 6.70450 6.80418 7.02290 7.63242 8.09959 8.43910 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022509 B = 0.010000 C = 0.007102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.659892 B = 2799.435055 C = 3941.471399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.102 4.102 3 C -0.144 4.144 4 C 0.150 3.850 5 N -0.715 5.715 6 C 0.257 3.743 7 N -0.516 5.516 8 C -0.085 4.085 9 C 0.006 3.994 10 N -0.486 5.486 11 C 0.157 3.843 12 C -0.445 4.445 13 H 0.099 0.901 14 C 0.021 3.979 15 N -0.757 5.757 16 Si 0.989 3.011 17 H -0.263 1.263 18 H -0.272 1.272 19 H -0.248 1.248 20 H 0.075 0.925 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.077 0.923 24 H 0.051 0.949 25 H 0.044 0.956 26 H 0.075 0.925 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.406 0.594 30 H 0.154 0.846 31 H 0.145 0.855 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.694 4.528 -6.283 10.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.121 4.121 3 C -0.201 4.201 4 C 0.026 3.974 5 N -0.357 5.357 6 C 0.009 3.991 7 N -0.239 5.239 8 C -0.238 4.238 9 C -0.156 4.156 10 N -0.204 5.204 11 C 0.022 3.978 12 C -0.479 4.479 13 H 0.117 0.883 14 C -0.201 4.201 15 N -0.379 5.379 16 Si 0.808 3.192 17 H -0.188 1.188 18 H -0.197 1.197 19 H -0.171 1.171 20 H 0.094 0.906 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.095 0.905 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.093 0.907 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.244 0.756 30 H 0.171 0.829 31 H 0.162 0.838 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.671 4.368 -5.978 10.661 hybrid contribution 0.766 0.019 -0.140 0.779 sum -6.905 4.387 -6.119 10.216 Atomic orbital electron populations 1.21718 0.92766 1.02256 1.02734 1.21328 0.97506 0.96594 0.96691 1.21818 1.00681 0.95319 1.02317 1.21125 0.79939 0.98612 0.97751 1.43834 1.05745 1.64398 1.21678 1.19555 0.89900 0.98721 0.90920 1.67437 1.39802 1.14226 1.02388 1.22763 0.92960 1.08338 0.99743 1.23528 0.93076 1.00646 0.98318 1.69415 1.36305 1.13163 1.01556 1.19544 0.88373 0.95120 0.94749 1.19663 0.92601 1.32158 1.03508 0.88319 1.27027 0.98853 0.94296 0.99912 1.70220 1.09495 1.27926 1.30307 0.85107 0.77687 0.78622 0.77751 1.18804 1.19687 1.17120 0.90594 0.92504 0.92477 0.90511 0.93009 0.93685 0.90654 0.94461 0.94470 0.75583 0.82909 0.83759 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.19 71.98 0.66 -2.03 16 2 C -0.10 -2.55 2.96 -10.79 -0.03 -2.58 16 3 C -0.14 -3.38 9.07 71.98 0.65 -2.73 16 4 C 0.15 5.15 5.08 86.38 0.44 5.59 16 5 N -0.72 -29.65 5.33 -343.42 -1.83 -31.48 16 6 C 0.26 13.07 7.51 134.03 1.01 14.08 16 7 N -0.52 -26.05 9.71 -190.82 -1.85 -27.90 16 8 C -0.08 -4.08 11.22 84.81 0.95 -3.13 16 9 C 0.01 0.30 11.21 84.89 0.95 1.25 16 10 N -0.49 -28.04 8.03 -188.06 -1.51 -29.55 16 11 C 0.16 8.77 6.56 40.34 0.26 9.03 16 12 C -0.44 -23.17 8.89 23.36 0.21 -22.96 16 13 H 0.10 4.56 6.12 -2.91 -0.02 4.55 16 14 C 0.02 1.04 5.50 85.31 0.47 1.51 16 15 N -0.76 -40.79 11.48 21.86 0.25 -40.53 16 16 Si 0.99 36.66 29.56 68.60 2.03 38.69 16 17 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 18 H -0.27 -9.83 7.11 99.48 0.71 -9.13 16 19 H -0.25 -8.58 7.11 99.48 0.71 -7.87 16 20 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 21 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.04 1.19 7.18 -2.39 -0.02 1.17 16 26 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.41 15.75 5.64 -92.71 -0.52 15.22 16 30 H 0.15 6.20 8.06 -2.92 -0.02 6.18 16 31 H 0.15 6.44 8.06 -2.91 -0.02 6.42 16 32 H 0.28 13.63 8.29 -92.71 -0.77 12.86 16 Total: -1.00 -64.91 271.11 3.25 -61.66 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: 0.59 Total: 31.10 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: 5.57 Total: -1.98 kcal Atomic # 7 Polarization: -124.53 SS G_CDS: -4.94 Total: -129.47 kcal Atomic # 14 Polarization: 36.66 SS G_CDS: 2.03 Total: 38.69 kcal Total: -64.91 3.25 -61.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161645149.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.786 kcal (2) G-P(sol) polarization free energy of solvation -64.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds