Wall clock time and date at job start Sun Mar 29 2020 22:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47270 * 2 1 4 4 C 1.52998 * 109.47338 * 120.00072 * 2 1 3 5 5 N 1.46499 * 109.47574 * 174.99842 * 4 2 1 6 6 C 1.38804 * 120.00247 * 180.02562 * 5 4 2 7 7 C 1.40081 * 120.75769 * 180.02562 * 6 5 4 8 8 N 1.31668 * 119.13739 * 180.02562 * 7 6 5 9 9 C 1.33595 * 120.78831 * 359.97438 * 8 7 6 10 10 C 1.41153 * 119.16706 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00184 * 359.97438 * 10 9 8 12 12 C 1.40045 * 119.99823 * 180.02562 * 10 9 8 13 13 N 1.30730 * 120.00049 * 359.72575 * 12 10 9 14 14 Si 1.86795 * 119.99981 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47317 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47320 * 120.00329 * 14 12 10 17 17 H 1.48501 * 109.47213 * 240.00189 * 14 12 10 18 18 N 1.33599 * 121.65831 * 0.27830 * 9 8 7 19 19 C 1.31651 * 120.79256 * 359.43897 * 18 9 8 20 20 H 1.08999 * 109.47405 * 300.00299 * 1 2 3 21 21 H 1.09001 * 109.47314 * 60.00234 * 1 2 3 22 22 H 1.09000 * 109.47249 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47558 * 240.00102 * 2 1 3 24 24 H 1.09002 * 109.47425 * 179.97438 * 3 2 1 25 25 H 1.09008 * 109.47404 * 299.99955 * 3 2 1 26 26 H 1.08998 * 109.47174 * 60.00098 * 3 2 1 27 27 H 1.08997 * 109.46847 * 54.99877 * 4 2 1 28 28 H 1.08998 * 109.47051 * 295.00261 * 4 2 1 29 29 H 0.97000 * 120.00052 * 0.02562 * 5 4 2 30 30 H 1.07995 * 120.43433 * 359.97438 * 7 6 5 31 31 H 0.97000 * 120.00283 * 180.02562 * 13 12 10 32 32 H 1.08001 * 120.43562 * 180.25207 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8264 1.1906 6 6 4.1931 -1.4473 2.2205 7 6 5.5891 -1.5561 2.1810 8 7 6.2141 -2.1518 3.1751 9 6 5.5330 -2.6480 4.2117 10 6 6.2378 -3.2794 5.2591 11 1 7.3142 -3.3569 5.2158 12 6 5.5413 -3.8062 6.3539 13 7 4.2388 -3.7085 6.4083 14 14 6.4740 -4.6410 7.7403 15 1 7.9289 -4.6160 7.4436 16 1 6.2156 -3.9224 9.0139 17 1 6.0191 -6.0491 7.8654 18 7 4.2013 -2.5662 4.2796 19 6 3.5125 -1.9789 3.3235 20 1 -0.3634 0.5139 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6053 -1.7198 1.2951 28 1 1.7516 -0.1583 2.1369 29 1 3.9824 -0.4622 0.4319 30 1 6.1454 -1.1574 1.3456 31 1 3.7563 -4.0730 7.1668 32 1 2.4364 -1.9124 3.3862 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161648433.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:28 Heat of formation + Delta-G solvation = 35.483122 kcal Electronic energy + Delta-G solvation = -14485.811007 eV Core-core repulsion = 12060.007651 eV Total energy + Delta-G solvation = -2425.803356 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.97110 -36.98389 -34.04944 -32.92264 -31.65584 -29.04096 -27.21572 -26.31476 -24.37498 -22.76892 -21.06931 -20.04429 -17.75328 -16.42268 -15.68623 -15.21965 -15.03678 -14.31438 -14.09868 -13.52848 -13.22700 -12.79893 -12.59122 -12.39510 -12.11263 -11.83315 -11.21667 -11.13681 -11.08323 -10.93556 -10.68010 -10.50306 -10.11681 -9.74114 -9.32446 -9.12075 -8.86338 -7.21510 -6.71294 -6.36113 -4.32127 2.78514 2.95973 3.15902 3.22215 3.22510 4.03052 4.28032 4.81023 4.86111 4.91320 5.10237 5.55767 5.60947 5.71112 5.80961 5.83248 5.88702 5.99001 6.00532 6.06577 6.11119 6.25516 6.33237 6.37069 6.54216 7.14670 7.21460 7.44381 8.21552 8.33306 8.57824 8.62832 8.79733 9.26915 10.29019 10.44811 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.059700 B = 0.005818 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.902929 B = 4811.431478 C = 5177.298240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C -0.145 4.145 4 C 0.142 3.858 5 N -0.752 5.752 6 C -0.037 4.037 7 C 0.100 3.900 8 N -0.566 5.566 9 C 0.368 3.632 10 C -0.415 4.415 11 H 0.089 0.911 12 C 0.069 3.931 13 N -0.727 5.727 14 Si 0.914 3.086 15 H -0.260 1.260 16 H -0.274 1.274 17 H -0.274 1.274 18 N -0.476 5.476 19 C 0.100 3.900 20 H 0.056 0.944 21 H 0.054 0.946 22 H 0.056 0.944 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.384 0.616 30 H 0.125 0.875 31 H 0.270 0.730 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.181 5.440 -8.130 11.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.125 4.125 3 C -0.202 4.202 4 C 0.016 3.984 5 N -0.389 5.389 6 C -0.142 4.142 7 C -0.075 4.075 8 N -0.285 5.285 9 C 0.127 3.873 10 C -0.452 4.452 11 H 0.107 0.893 12 C -0.156 4.156 13 N -0.351 5.351 14 Si 0.738 3.262 15 H -0.184 1.184 16 H -0.200 1.200 17 H -0.200 1.200 18 N -0.192 5.192 19 C -0.077 4.077 20 H 0.075 0.925 21 H 0.073 0.927 22 H 0.075 0.925 23 H 0.090 0.910 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.217 0.783 30 H 0.143 0.857 31 H 0.081 0.919 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.007 4.867 -7.102 10.498 hybrid contribution -0.100 0.261 -0.467 0.545 sum -6.108 5.128 -7.569 10.995 Atomic orbital electron populations 1.21764 0.94729 1.01929 1.01776 1.21297 0.95993 0.96621 0.98598 1.21820 1.01352 0.95671 1.01371 1.21082 0.82203 0.98625 0.96447 1.43569 1.03944 1.68160 1.23261 1.19217 0.93569 1.07416 0.94023 1.22178 0.89236 0.98634 0.97405 1.68545 1.40389 1.16083 1.03498 1.19819 0.85658 0.91458 0.90400 1.19117 0.94792 1.30919 1.00394 0.89328 1.25998 0.94911 0.95450 0.99228 1.70160 1.07335 1.30737 1.26916 0.86177 0.80812 0.79032 0.80194 1.18355 1.19950 1.19952 1.69271 1.08431 1.16677 1.24843 1.22684 0.98979 0.96208 0.89827 0.92467 0.92685 0.92498 0.91029 0.92430 0.93101 0.92638 0.93583 0.93521 0.78297 0.85733 0.91866 0.85736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.19 37.15 0.34 -1.03 16 2 C -0.11 -1.17 2.96 -90.63 -0.27 -1.44 16 3 C -0.14 -1.51 9.07 37.16 0.34 -1.17 16 4 C 0.14 2.06 4.33 -4.04 -0.02 2.04 16 5 N -0.75 -12.73 5.43 -58.23 -0.32 -13.05 16 6 C -0.04 -0.82 6.72 -83.32 -0.56 -1.38 16 7 C 0.10 2.33 11.20 -16.93 -0.19 2.14 16 8 N -0.57 -15.47 10.34 -12.49 -0.13 -15.60 16 9 C 0.37 10.78 7.35 -158.23 -1.16 9.62 16 10 C -0.42 -11.88 9.35 -37.80 -0.35 -12.23 16 11 H 0.09 2.45 7.85 -52.49 -0.41 2.04 16 12 C 0.07 1.82 5.50 -17.34 -0.10 1.72 16 13 N -0.73 -19.97 11.41 55.55 0.63 -19.34 16 14 Si 0.91 19.37 29.56 -169.99 -5.02 14.34 16 15 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 16 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 17 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 18 N -0.48 -13.58 7.84 -12.49 -0.10 -13.68 16 19 C 0.10 2.45 10.58 -16.94 -0.18 2.27 16 20 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 21 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.63 7.18 -51.93 -0.37 0.26 16 25 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.70 7.98 -51.93 -0.41 0.29 16 28 H 0.05 0.71 7.99 -51.93 -0.41 0.30 16 29 H 0.38 5.71 7.68 -40.82 -0.31 5.39 16 30 H 0.13 2.45 8.06 -52.49 -0.42 2.03 16 31 H 0.27 6.68 8.29 -40.82 -0.34 6.34 16 32 H 0.13 2.75 6.88 -52.49 -0.36 2.39 16 LS Contribution 272.91 15.07 4.11 4.11 Total: -1.00 -31.05 272.91 -7.35 -38.40 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -4.38 Total: 4.27 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -2.15 Total: 0.54 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: 0.09 Total: -61.66 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.05 -7.35 -38.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161648433.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.883 kcal (2) G-P(sol) polarization free energy of solvation -31.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds