Wall clock time and date at job start Sun Mar 29 2020 22:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47270 * 2 1 4 4 C 1.52998 * 109.47338 * 120.00072 * 2 1 3 5 5 N 1.46499 * 109.47574 * 174.99842 * 4 2 1 6 6 C 1.38804 * 120.00247 * 180.02562 * 5 4 2 7 7 C 1.40081 * 120.75769 * 180.02562 * 6 5 4 8 8 N 1.31668 * 119.13739 * 180.02562 * 7 6 5 9 9 C 1.33595 * 120.78831 * 359.97438 * 8 7 6 10 10 C 1.41153 * 119.16706 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00184 * 359.97438 * 10 9 8 12 12 C 1.40045 * 119.99823 * 180.02562 * 10 9 8 13 13 N 1.30730 * 120.00049 * 359.72575 * 12 10 9 14 14 Si 1.86795 * 119.99981 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47317 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47320 * 120.00329 * 14 12 10 17 17 H 1.48501 * 109.47213 * 240.00189 * 14 12 10 18 18 N 1.33599 * 121.65831 * 0.27830 * 9 8 7 19 19 C 1.31651 * 120.79256 * 359.43897 * 18 9 8 20 20 H 1.08999 * 109.47405 * 300.00299 * 1 2 3 21 21 H 1.09001 * 109.47314 * 60.00234 * 1 2 3 22 22 H 1.09000 * 109.47249 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47558 * 240.00102 * 2 1 3 24 24 H 1.09002 * 109.47425 * 179.97438 * 3 2 1 25 25 H 1.09008 * 109.47404 * 299.99955 * 3 2 1 26 26 H 1.08998 * 109.47174 * 60.00098 * 3 2 1 27 27 H 1.08997 * 109.46847 * 54.99877 * 4 2 1 28 28 H 1.08998 * 109.47051 * 295.00261 * 4 2 1 29 29 H 0.97000 * 120.00052 * 0.02562 * 5 4 2 30 30 H 1.07995 * 120.43433 * 359.97438 * 7 6 5 31 31 H 0.97000 * 120.00283 * 180.02562 * 13 12 10 32 32 H 1.08001 * 120.43562 * 180.25207 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8264 1.1906 6 6 4.1931 -1.4473 2.2205 7 6 5.5891 -1.5561 2.1810 8 7 6.2141 -2.1518 3.1751 9 6 5.5330 -2.6480 4.2117 10 6 6.2378 -3.2794 5.2591 11 1 7.3142 -3.3569 5.2158 12 6 5.5413 -3.8062 6.3539 13 7 4.2388 -3.7085 6.4083 14 14 6.4740 -4.6410 7.7403 15 1 7.9289 -4.6160 7.4436 16 1 6.2156 -3.9224 9.0139 17 1 6.0191 -6.0491 7.8654 18 7 4.2013 -2.5662 4.2796 19 6 3.5125 -1.9789 3.3235 20 1 -0.3634 0.5139 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6053 -1.7198 1.2951 28 1 1.7516 -0.1583 2.1369 29 1 3.9824 -0.4622 0.4319 30 1 6.1454 -1.1574 1.3456 31 1 3.7563 -4.0730 7.1668 32 1 2.4364 -1.9124 3.3862 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161648433.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:27 Heat of formation + Delta-G solvation = 15.073792 kcal Electronic energy + Delta-G solvation = -14486.696022 eV Core-core repulsion = 12060.007651 eV Total energy + Delta-G solvation = -2426.688371 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.88275 -38.24393 -35.73747 -34.57395 -33.65611 -30.83725 -28.03010 -27.97427 -26.01956 -24.60380 -22.90446 -21.10027 -19.71929 -18.14141 -17.28647 -17.05355 -16.28028 -16.02726 -15.55567 -15.01472 -14.53455 -14.38950 -14.14850 -13.62042 -13.34693 -12.96871 -12.93087 -12.84489 -12.57069 -12.01081 -11.92523 -11.85749 -11.60206 -11.41430 -11.22773 -11.13349 -10.70488 -9.22579 -8.48617 -8.30697 -6.32438 0.87433 1.02066 1.43380 1.53893 1.60268 2.27886 2.85341 2.85637 3.88126 3.97311 4.03057 4.04273 4.11208 4.19310 4.35595 4.67318 4.68814 4.75491 4.84456 4.87524 5.01592 5.09090 5.18833 5.23902 5.33954 5.41987 5.46376 5.60323 6.24838 6.53964 6.59546 6.80485 7.10376 7.33543 8.30078 8.52070 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.059700 B = 0.005818 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.902929 B = 4811.431478 C = 5177.298240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 C -0.144 4.144 4 C 0.137 3.863 5 N -0.736 5.736 6 C -0.006 4.006 7 C 0.084 3.916 8 N -0.588 5.588 9 C 0.335 3.665 10 C -0.458 4.458 11 H 0.082 0.918 12 C 0.025 3.975 13 N -0.767 5.767 14 Si 0.996 3.004 15 H -0.258 1.258 16 H -0.264 1.264 17 H -0.263 1.263 18 N -0.507 5.507 19 C 0.074 3.926 20 H 0.055 0.945 21 H 0.072 0.928 22 H 0.056 0.944 23 H 0.079 0.921 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.049 0.951 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.399 0.601 30 H 0.164 0.836 31 H 0.278 0.722 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.748 6.057 -9.231 12.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 C -0.201 4.201 4 C 0.012 3.988 5 N -0.373 5.373 6 C -0.113 4.113 7 C -0.090 4.090 8 N -0.307 5.307 9 C 0.092 3.908 10 C -0.496 4.496 11 H 0.100 0.900 12 C -0.195 4.195 13 N -0.391 5.391 14 Si 0.815 3.185 15 H -0.182 1.182 16 H -0.188 1.188 17 H -0.188 1.188 18 N -0.224 5.224 19 C -0.102 4.102 20 H 0.074 0.926 21 H 0.091 0.909 22 H 0.075 0.925 23 H 0.098 0.902 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.235 0.765 30 H 0.181 0.819 31 H 0.089 0.911 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.620 5.532 -8.282 11.959 hybrid contribution -0.037 0.210 -0.363 0.421 sum -6.656 5.742 -8.645 12.329 Atomic orbital electron populations 1.21759 0.93333 1.02272 1.02667 1.21246 0.97041 0.96570 0.96738 1.21819 1.00932 0.95252 1.02122 1.21285 0.80349 0.98855 0.98319 1.43658 1.05152 1.66410 1.22098 1.19227 0.93436 1.04782 0.93862 1.22816 0.90230 0.98297 0.97638 1.68533 1.41200 1.16794 1.04143 1.20145 0.86335 0.92881 0.91486 1.19390 0.94778 1.33307 1.02117 0.89983 1.26920 0.95809 0.95507 1.01299 1.70235 1.08955 1.31761 1.28181 0.84972 0.79064 0.78046 0.76385 1.18158 1.18814 1.18804 1.69186 1.08498 1.18084 1.26634 1.23034 0.99855 0.96900 0.90374 0.92555 0.90867 0.92486 0.90226 0.93050 0.91110 0.93216 0.94077 0.94167 0.76546 0.81879 0.91091 0.84000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.19 71.98 0.66 -1.63 16 2 C -0.10 -1.86 2.96 -10.80 -0.03 -1.89 16 3 C -0.14 -2.57 9.07 71.98 0.65 -1.92 16 4 C 0.14 3.68 4.33 86.38 0.37 4.05 16 5 N -0.74 -23.27 5.43 -338.15 -1.84 -25.10 16 6 C -0.01 -0.27 6.72 38.93 0.26 -0.01 16 7 C 0.08 3.85 11.20 85.16 0.95 4.80 16 8 N -0.59 -32.60 10.34 -193.42 -2.00 -34.60 16 9 C 0.34 20.26 7.35 134.95 0.99 21.25 16 10 C -0.46 -27.20 9.35 23.42 0.22 -26.98 16 11 H 0.08 4.74 7.85 -2.91 -0.02 4.72 16 12 C 0.03 1.37 5.50 85.30 0.47 1.84 16 13 N -0.77 -43.15 11.41 21.84 0.25 -42.90 16 14 Si 1.00 40.35 29.56 68.60 2.03 42.37 16 15 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 16 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 17 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 18 N -0.51 -29.74 7.84 -193.43 -1.52 -31.26 16 19 C 0.07 3.64 10.58 85.17 0.90 4.54 16 20 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 21 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 24 H 0.05 0.97 7.18 -2.39 -0.02 0.96 16 25 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 26 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.04 1.18 7.98 -2.39 -0.02 1.16 16 28 H 0.04 1.16 7.99 -2.39 -0.02 1.15 16 29 H 0.40 10.60 7.68 -92.71 -0.71 9.89 16 30 H 0.16 6.02 8.06 -2.91 -0.02 6.00 16 31 H 0.28 14.01 8.29 -92.71 -0.77 13.24 16 32 H 0.14 6.29 6.88 -2.91 -0.02 6.27 16 Total: -1.00 -69.08 272.91 2.78 -66.30 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.40 Total: 21.12 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 5.45 Total: 4.06 kcal Atomic # 7 Polarization: -128.75 SS G_CDS: -5.10 Total: -133.86 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.37 kcal Total: -69.08 2.78 -66.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161648433.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.377 kcal (2) G-P(sol) polarization free energy of solvation -69.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds