Wall clock time and date at job start Sun Mar 29 2020 21:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34770 * 120.00278 * 2 1 4 4 O 1.21605 * 119.99847 * 0.02562 * 3 2 1 5 5 C 1.47544 * 120.00277 * 179.97438 * 3 2 1 6 6 C 1.40358 * 120.46871 * 180.02562 * 5 3 2 7 7 C 1.36875 * 118.48903 * 179.97438 * 6 5 3 8 8 C 1.39471 * 119.37347 * 359.97438 * 7 6 5 9 9 N 1.38370 * 119.54388 * 179.97438 * 8 7 6 10 10 C 1.36843 * 119.99882 * 354.27015 * 9 8 7 11 11 H 1.07997 * 120.00360 * 5.02431 * 10 9 8 12 12 C 1.38896 * 119.99487 * 185.02459 * 10 9 8 13 13 N 1.31503 * 119.99613 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 120.00253 * 359.97438 * 12 10 9 15 15 H 1.48505 * 109.46889 * 90.00053 * 14 12 10 16 16 H 1.48502 * 109.47079 * 209.99930 * 14 12 10 17 17 H 1.48496 * 109.47176 * 330.00261 * 14 12 10 18 18 N 1.32687 * 120.90819 * 0.02562 * 8 7 6 19 19 C 1.31609 * 121.64039 * 359.97438 * 18 8 7 20 20 H 1.08998 * 109.47149 * 59.99853 * 1 2 3 21 21 H 1.09000 * 109.47023 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47152 * 299.99617 * 1 2 3 23 23 H 0.97009 * 119.99939 * 180.02562 * 2 1 3 24 24 H 1.07998 * 120.75805 * 359.95961 * 6 5 3 25 25 H 1.07999 * 120.31463 * 179.72884 * 7 6 5 26 26 H 0.96996 * 119.99423 * 174.26828 * 9 8 7 27 27 H 0.97001 * 119.99743 * 179.97438 * 13 12 10 28 28 H 1.08000 * 119.73147 * 180.02562 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5309 2.2203 0.0005 5 6 3.6144 1.1671 0.0006 6 6 4.3261 2.3769 0.0011 7 6 5.6940 2.3296 0.0022 8 6 6.3357 1.0913 0.0032 9 7 7.7185 1.0394 0.0038 10 6 8.4464 2.1920 -0.1151 11 1 7.9451 3.1485 -0.1276 12 6 9.8302 2.1316 -0.2196 13 7 10.5298 3.2393 -0.3332 14 14 10.6973 0.4773 -0.1972 15 1 10.8185 -0.0368 -1.5852 16 1 12.0512 0.6360 0.3919 17 1 9.9116 -0.4825 0.6192 18 7 5.6385 -0.0377 0.0027 19 6 4.3224 -0.0363 0.0017 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.9501 -0.8401 -0.0004 24 1 3.8062 3.3235 0.0005 25 1 6.2710 3.2425 -0.0018 26 1 8.1716 0.1859 0.0884 27 1 11.4962 3.1972 -0.4059 28 1 3.7859 -0.9736 0.0017 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163181722.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:25 Heat of formation + Delta-G solvation = 4.693305 kcal Electronic energy + Delta-G solvation = -14101.681788 eV Core-core repulsion = 11538.710190 eV Total energy + Delta-G solvation = -2562.971598 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.75455 -38.45010 -35.56602 -34.27872 -32.48620 -31.53453 -29.58240 -26.55775 -24.92623 -22.77241 -22.09635 -20.07520 -18.59769 -17.56506 -16.79136 -15.96686 -15.09963 -14.82686 -14.53806 -14.26198 -13.53303 -13.46067 -13.21767 -12.60283 -12.48085 -12.26254 -12.13679 -11.67421 -11.57326 -10.84636 -10.58687 -10.31027 -9.55582 -9.17689 -9.01804 -8.88150 -8.59442 -7.31498 -6.80420 -4.09191 1.64875 2.29681 2.88312 2.91404 2.95828 3.54030 3.60456 3.76738 4.30445 4.54340 5.00993 5.12412 5.27831 5.56030 5.57892 5.71298 5.85806 6.08224 6.19859 6.53302 6.66057 6.78695 7.03520 7.20505 7.36981 7.69481 7.86364 8.20474 8.49367 8.71689 8.89362 9.19212 10.28161 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.069042 B = 0.005942 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.455162 B = 4711.376581 C = 5098.586776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.745 5.745 3 C 0.577 3.423 4 O -0.566 6.566 5 C -0.332 4.332 6 C 0.022 3.978 7 C -0.249 4.249 8 C 0.370 3.630 9 N -0.534 5.534 10 C -0.308 4.308 11 H 0.127 0.873 12 C 0.049 3.951 13 N -0.852 5.852 14 Si 0.886 3.114 15 H -0.264 1.264 16 H -0.270 1.270 17 H -0.263 1.263 18 N -0.580 5.580 19 C 0.201 3.799 20 H 0.054 0.946 21 H 0.069 0.931 22 H 0.054 0.946 23 H 0.398 0.602 24 H 0.125 0.875 25 H 0.133 0.867 26 H 0.385 0.615 27 H 0.283 0.717 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.452 -7.785 0.554 12.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.398 5.398 3 C 0.369 3.631 4 O -0.446 6.446 5 C -0.345 4.345 6 C -0.003 4.003 7 C -0.275 4.275 8 C 0.126 3.874 9 N -0.139 5.139 10 C -0.437 4.437 11 H 0.144 0.856 12 C -0.160 4.160 13 N -0.485 5.485 14 Si 0.711 3.289 15 H -0.189 1.189 16 H -0.195 1.195 17 H -0.188 1.188 18 N -0.300 5.300 19 C 0.033 3.967 20 H 0.073 0.927 21 H 0.088 0.912 22 H 0.073 0.927 23 H 0.232 0.768 24 H 0.143 0.857 25 H 0.151 0.849 26 H 0.221 0.779 27 H 0.094 0.906 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.821 -7.438 0.511 11.550 hybrid contribution 0.538 -0.713 0.035 0.894 sum -8.283 -8.151 0.546 11.634 Atomic orbital electron populations 1.21411 0.80437 1.01433 1.01907 1.45703 1.07091 1.08923 1.78070 1.18190 0.87438 0.82906 0.74543 1.90687 1.70487 1.31399 1.52005 1.19817 0.91951 0.95491 1.27223 1.20804 0.92905 0.97009 0.89577 1.20935 0.94253 0.97810 1.14545 1.18213 0.84721 0.89444 0.95021 1.41153 1.01959 1.09370 1.61396 1.19604 0.89785 0.86796 1.47522 0.85587 1.25124 0.96166 0.98444 0.96264 1.69640 1.08169 1.26994 1.43676 0.86507 0.80225 0.82432 0.79711 1.18899 1.19506 1.18830 1.67033 1.08318 1.29202 1.25469 1.22098 0.88965 0.95618 0.90035 0.92697 0.91242 0.92692 0.76813 0.85738 0.84930 0.77902 0.90584 0.84556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.98 10.70 59.85 0.64 1.62 15 2 N -0.75 -9.67 5.66 -68.14 -0.39 -10.06 15 3 C 0.58 10.17 7.77 -12.47 -0.10 10.07 15 4 O -0.57 -11.80 16.41 5.27 0.09 -11.72 15 5 C -0.33 -6.15 5.89 -104.79 -0.62 -6.77 15 6 C 0.02 0.44 9.65 -39.28 -0.38 0.06 15 7 C -0.25 -5.30 9.26 -39.62 -0.37 -5.67 15 8 C 0.37 8.18 7.60 -155.26 -1.18 7.00 15 9 N -0.53 -12.20 5.21 -11.16 -0.06 -12.26 15 10 C -0.31 -7.62 10.02 -15.07 -0.15 -7.77 15 11 H 0.13 3.27 5.87 -52.49 -0.31 2.97 15 12 C 0.05 1.19 5.50 -17.45 -0.10 1.10 15 13 N -0.85 -22.14 13.96 55.49 0.77 -21.36 15 14 Si 0.89 18.19 27.78 -169.99 -4.72 13.46 15 15 H -0.26 -5.39 7.11 56.52 0.40 -4.99 15 16 H -0.27 -5.48 7.11 56.52 0.40 -5.08 15 17 H -0.26 -5.17 6.45 56.52 0.36 -4.81 15 18 N -0.58 -11.84 10.39 -12.12 -0.13 -11.97 15 19 C 0.20 3.50 10.71 -17.13 -0.18 3.31 15 20 H 0.05 0.62 8.14 -51.93 -0.42 0.19 15 21 H 0.07 0.48 8.14 -51.93 -0.42 0.06 15 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 15 23 H 0.40 4.05 6.88 -40.82 -0.28 3.77 15 24 H 0.12 2.36 7.73 -52.49 -0.41 1.96 15 25 H 0.13 2.84 5.93 -52.49 -0.31 2.53 15 26 H 0.39 8.37 5.86 -40.82 -0.24 8.13 15 27 H 0.28 6.80 8.31 -40.82 -0.34 6.46 15 28 H 0.14 1.77 6.41 -52.49 -0.34 1.43 15 LS Contribution 248.60 15.07 3.75 3.75 Total: -1.00 -28.96 248.60 -5.44 -34.39 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -2.32 Total: 12.81 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -2.43 Total: 2.96 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.20 Total: -55.65 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -4.72 Total: 13.46 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -28.96 -5.44 -34.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181722.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.085 kcal (2) G-P(sol) polarization free energy of solvation -28.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds