Wall clock time and date at job start Sun Mar 29 2020 21:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21284 * 120.00275 * 2 1 4 4 N 1.34776 * 119.99614 * 179.97438 * 2 1 3 5 5 C 1.40036 * 119.99738 * 185.26632 * 4 2 1 6 6 C 1.39449 * 120.40284 * 32.72167 * 5 4 2 7 7 C 1.38208 * 118.45162 * 179.97438 * 6 5 4 8 8 C 1.39252 * 119.16832 * 359.97438 * 7 6 5 9 9 N 1.38915 * 119.63558 * 180.02562 * 8 7 6 10 10 C 1.36893 * 120.00053 * 0.02562 * 9 8 7 11 11 H 1.08000 * 119.99709 * 359.97438 * 10 9 8 12 12 C 1.38785 * 119.99687 * 179.97438 * 10 9 8 13 13 N 1.31581 * 119.99984 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99702 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47352 * 0.02562 * 14 12 10 16 16 H 1.48510 * 109.47104 * 120.00040 * 14 12 10 17 17 H 1.48495 * 109.47360 * 239.99752 * 14 12 10 18 18 N 1.32470 * 120.72549 * 0.02562 * 8 7 6 19 19 C 1.31847 * 121.69693 * 359.97438 * 18 8 7 20 20 H 1.09002 * 109.47222 * 240.00228 * 1 2 3 21 21 H 1.08994 * 109.46901 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47051 * 120.00301 * 1 2 3 23 23 H 0.96996 * 120.00347 * 5.27491 * 4 2 1 24 24 H 1.08005 * 120.77600 * 359.94657 * 6 5 4 25 25 H 1.08001 * 120.41758 * 179.72392 * 7 6 5 26 26 H 0.96995 * 119.99408 * 179.97438 * 9 8 7 27 27 H 0.97003 * 119.99993 * 179.97438 * 13 12 10 28 28 H 1.07999 * 119.62294 * 180.02562 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5767 -1.1698 0.1118 6 6 4.2267 -0.1898 0.8613 7 6 5.6057 -0.2310 0.9444 8 6 6.2956 -1.2431 0.2820 9 7 7.6816 -1.2941 0.3594 10 6 8.3618 -0.3529 1.0844 11 1 7.8207 0.4295 1.5959 12 6 9.7465 -0.4042 1.1622 13 7 10.4055 -1.3578 0.5394 14 14 10.6746 0.8804 2.1509 15 1 9.7091 1.8361 2.7507 16 1 11.4449 0.2126 3.2307 17 1 11.6076 1.6134 1.2579 18 7 5.6446 -2.1578 -0.4211 19 6 4.3300 -2.1483 -0.5216 20 1 -0.3634 -0.5138 0.8900 21 1 -0.3633 1.0276 -0.0005 22 1 -0.3633 -0.5139 -0.8900 23 1 1.6989 -2.0055 -0.0763 24 1 3.6657 0.5837 1.3648 25 1 6.1418 0.5148 1.5127 26 1 8.1674 -1.9970 -0.0996 27 1 11.3734 -1.3934 0.5935 28 1 3.8336 -2.9108 -1.1034 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163182579.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:31 Heat of formation + Delta-G solvation = 3.441183 kcal Electronic energy + Delta-G solvation = -14153.606157 eV Core-core repulsion = 11590.580263 eV Total energy + Delta-G solvation = -2563.025894 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.94012 -38.48765 -35.53135 -34.02886 -31.77273 -31.22600 -29.82922 -27.33148 -24.76692 -22.85304 -21.66909 -19.99942 -18.09494 -17.15574 -16.55566 -16.41174 -15.29124 -14.80190 -14.61793 -13.80780 -13.47778 -13.29161 -13.21253 -12.62890 -12.39798 -12.01918 -11.93025 -11.41588 -11.34948 -10.70089 -10.43472 -10.39571 -9.76933 -9.68303 -8.72153 -8.61926 -8.25920 -6.72457 -6.64433 -3.82931 2.14562 2.40704 2.97111 3.14425 3.15883 3.19012 3.54631 3.97630 4.67645 4.89848 4.94512 5.21270 5.24537 5.32442 5.55577 5.74631 5.87006 6.18661 6.30878 6.60376 6.86303 6.96786 7.15543 7.33024 7.56359 7.78649 7.91047 8.52426 8.57714 8.90465 9.28740 9.65458 10.51963 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.055149 B = 0.006056 C = 0.005525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.594231 B = 4622.680151 C = 5066.995788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.497 3.503 3 O -0.540 6.540 4 N -0.652 5.652 5 C -0.060 4.060 6 C -0.022 4.022 7 C -0.245 4.245 8 C 0.356 3.644 9 N -0.530 5.530 10 C -0.300 4.300 11 H 0.106 0.894 12 C 0.023 3.977 13 N -0.883 5.883 14 Si 0.936 3.064 15 H -0.266 1.266 16 H -0.278 1.278 17 H -0.278 1.278 18 N -0.563 5.563 19 C 0.149 3.851 20 H 0.085 0.915 21 H 0.089 0.911 22 H 0.084 0.916 23 H 0.400 0.600 24 H 0.123 0.877 25 H 0.126 0.874 26 H 0.404 0.596 27 H 0.276 0.724 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.896 -0.630 0.512 13.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.284 3.716 3 O -0.417 6.417 4 N -0.297 5.297 5 C -0.161 4.161 6 C -0.048 4.048 7 C -0.273 4.273 8 C 0.112 3.888 9 N -0.136 5.136 10 C -0.431 4.431 11 H 0.124 0.876 12 C -0.182 4.182 13 N -0.520 5.520 14 Si 0.762 3.238 15 H -0.190 1.190 16 H -0.204 1.204 17 H -0.204 1.204 18 N -0.284 5.284 19 C -0.017 4.017 20 H 0.104 0.896 21 H 0.108 0.892 22 H 0.103 0.897 23 H 0.234 0.766 24 H 0.141 0.859 25 H 0.144 0.856 26 H 0.239 0.761 27 H 0.087 0.913 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.445 -0.392 0.237 12.453 hybrid contribution -0.015 0.451 0.572 0.729 sum -12.460 0.059 0.810 12.486 Atomic orbital electron populations 1.21889 0.92038 1.05222 1.03913 1.20812 0.90321 0.83777 0.76713 1.90719 1.70538 1.31393 1.49070 1.43102 1.05606 1.08494 1.72502 1.17988 0.82394 1.04938 1.10790 1.20962 0.93673 0.96146 0.94054 1.21072 0.93430 1.03249 1.09529 1.18324 0.85771 0.91145 0.93518 1.40821 1.00600 1.27445 1.44730 1.19826 0.89562 1.07179 1.26502 0.87633 1.25361 0.96663 0.98237 0.97927 1.69718 1.09229 1.31827 1.41190 0.85697 0.79408 0.79701 0.78984 1.18991 1.20419 1.20398 1.67049 1.08766 1.28235 1.24343 1.21776 0.88687 0.96248 0.94966 0.89621 0.89221 0.89692 0.76596 0.85916 0.85633 0.76078 0.91349 0.84688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 10.32 36.01 0.37 -1.08 15 2 C 0.50 7.15 7.70 -10.98 -0.08 7.06 15 3 O -0.54 -10.51 14.77 5.55 0.08 -10.43 15 4 N -0.65 -9.08 5.36 -9.72 -0.05 -9.13 15 5 C -0.06 -1.12 6.31 -83.45 -0.53 -1.65 15 6 C -0.02 -0.45 8.76 -39.14 -0.34 -0.80 15 7 C -0.24 -5.61 9.33 -39.22 -0.37 -5.98 15 8 C 0.36 8.69 7.62 -155.00 -1.18 7.51 15 9 N -0.53 -13.79 5.44 -11.14 -0.06 -13.85 15 10 C -0.30 -7.85 9.54 -15.09 -0.14 -8.00 15 11 H 0.11 2.64 5.64 -52.49 -0.30 2.35 15 12 C 0.02 0.59 5.50 -17.46 -0.10 0.49 15 13 N -0.88 -23.80 13.05 55.49 0.72 -23.07 15 14 Si 0.94 19.87 29.55 -169.99 -5.02 14.85 15 15 H -0.27 -5.49 7.11 56.52 0.40 -5.09 15 16 H -0.28 -5.86 7.11 56.52 0.40 -5.46 15 17 H -0.28 -5.89 7.11 56.52 0.40 -5.49 15 18 N -0.56 -12.83 10.38 -12.25 -0.13 -12.96 15 19 C 0.15 2.83 11.11 -17.34 -0.19 2.63 15 20 H 0.09 0.55 8.14 -51.93 -0.42 0.13 15 21 H 0.09 0.78 8.12 -51.93 -0.42 0.35 15 22 H 0.08 0.53 8.14 -51.93 -0.42 0.11 15 23 H 0.40 3.87 8.82 -40.82 -0.36 3.51 15 24 H 0.12 2.51 6.47 -52.48 -0.34 2.17 15 25 H 0.13 2.84 5.93 -52.49 -0.31 2.53 15 26 H 0.40 10.83 8.01 -40.82 -0.33 10.50 15 27 H 0.28 6.96 8.31 -40.82 -0.34 6.62 15 28 H 0.14 2.03 8.06 -52.49 -0.42 1.61 15 LS Contribution 251.72 15.07 3.79 3.79 Total: -1.00 -31.09 251.72 -5.68 -36.77 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -2.46 Total: 13.85 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -2.56 Total: 0.18 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: 0.48 Total: -59.02 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -31.09 -5.68 -36.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182579.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.212 kcal (2) G-P(sol) polarization free energy of solvation -31.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds