Wall clock time and date at job start Sun Mar 29 2020 21:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21284 * 120.00275 * 2 1 4 4 N 1.34776 * 119.99614 * 179.97438 * 2 1 3 5 5 C 1.40036 * 119.99738 * 185.26632 * 4 2 1 6 6 C 1.39449 * 120.40284 * 32.72167 * 5 4 2 7 7 C 1.38208 * 118.45162 * 179.97438 * 6 5 4 8 8 C 1.39252 * 119.16832 * 359.97438 * 7 6 5 9 9 N 1.38915 * 119.63558 * 180.02562 * 8 7 6 10 10 C 1.36893 * 120.00053 * 0.02562 * 9 8 7 11 11 H 1.08000 * 119.99709 * 359.97438 * 10 9 8 12 12 C 1.38785 * 119.99687 * 179.97438 * 10 9 8 13 13 N 1.31581 * 119.99984 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99702 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47352 * 0.02562 * 14 12 10 16 16 H 1.48510 * 109.47104 * 120.00040 * 14 12 10 17 17 H 1.48495 * 109.47360 * 239.99752 * 14 12 10 18 18 N 1.32470 * 120.72549 * 0.02562 * 8 7 6 19 19 C 1.31847 * 121.69693 * 359.97438 * 18 8 7 20 20 H 1.09002 * 109.47222 * 240.00228 * 1 2 3 21 21 H 1.08994 * 109.46901 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47051 * 120.00301 * 1 2 3 23 23 H 0.96996 * 120.00347 * 5.27491 * 4 2 1 24 24 H 1.08005 * 120.77600 * 359.94657 * 6 5 4 25 25 H 1.08001 * 120.41758 * 179.72392 * 7 6 5 26 26 H 0.96995 * 119.99408 * 179.97438 * 9 8 7 27 27 H 0.97003 * 119.99993 * 179.97438 * 13 12 10 28 28 H 1.07999 * 119.62294 * 180.02562 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5767 -1.1698 0.1118 6 6 4.2267 -0.1898 0.8613 7 6 5.6057 -0.2310 0.9444 8 6 6.2956 -1.2431 0.2820 9 7 7.6816 -1.2941 0.3594 10 6 8.3618 -0.3529 1.0844 11 1 7.8207 0.4295 1.5959 12 6 9.7465 -0.4042 1.1622 13 7 10.4055 -1.3578 0.5394 14 14 10.6746 0.8804 2.1509 15 1 9.7091 1.8361 2.7507 16 1 11.4449 0.2126 3.2307 17 1 11.6076 1.6134 1.2579 18 7 5.6446 -2.1578 -0.4211 19 6 4.3300 -2.1483 -0.5216 20 1 -0.3634 -0.5138 0.8900 21 1 -0.3633 1.0276 -0.0005 22 1 -0.3633 -0.5139 -0.8900 23 1 1.6989 -2.0055 -0.0763 24 1 3.6657 0.5837 1.3648 25 1 6.1418 0.5148 1.5127 26 1 8.1674 -1.9970 -0.0996 27 1 11.3734 -1.3934 0.5935 28 1 3.8336 -2.9108 -1.1034 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182579.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:31 Heat of formation + Delta-G solvation = -19.260052 kcal Electronic energy + Delta-G solvation = -14154.590556 eV Core-core repulsion = 11590.580263 eV Total energy + Delta-G solvation = -2564.010293 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.41702 -40.03442 -37.24584 -35.54345 -33.57363 -32.86351 -30.97415 -28.83748 -26.58980 -24.54053 -23.26777 -21.34013 -19.87235 -18.77129 -18.10844 -17.75732 -16.87270 -16.37831 -16.07774 -15.33477 -15.11929 -14.98482 -14.73352 -13.93081 -13.65436 -13.36088 -13.17718 -13.04478 -12.92697 -12.33114 -12.28936 -12.07216 -11.40007 -11.02019 -10.52080 -10.34465 -9.92718 -8.52810 -8.43177 -5.79769 0.53465 0.68464 1.41043 1.44526 1.55519 1.79891 2.22300 2.38872 2.88094 3.14471 3.40649 3.89272 4.04151 4.19064 4.47548 4.55229 4.69481 4.76332 4.97489 5.15242 5.21783 5.26641 5.35075 5.61692 5.77712 6.17399 6.65838 6.71236 7.08553 7.38116 7.42372 7.79803 8.66147 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.055149 B = 0.006056 C = 0.005525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.594231 B = 4622.680151 C = 5066.995788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.492 3.508 3 O -0.595 6.595 4 N -0.641 5.641 5 C -0.034 4.034 6 C -0.028 4.028 7 C -0.263 4.263 8 C 0.344 3.656 9 N -0.559 5.559 10 C -0.320 4.320 11 H 0.107 0.893 12 C -0.026 4.026 13 N -0.925 5.925 14 Si 1.004 2.996 15 H -0.258 1.258 16 H -0.274 1.274 17 H -0.276 1.276 18 N -0.579 5.579 19 C 0.145 3.855 20 H 0.115 0.885 21 H 0.088 0.912 22 H 0.117 0.883 23 H 0.426 0.574 24 H 0.126 0.874 25 H 0.119 0.881 26 H 0.393 0.607 27 H 0.277 0.723 28 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.012 -0.851 0.492 17.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.283 3.717 3 O -0.476 6.476 4 N -0.289 5.289 5 C -0.135 4.135 6 C -0.055 4.055 7 C -0.291 4.291 8 C 0.103 3.897 9 N -0.168 5.168 10 C -0.450 4.450 11 H 0.125 0.875 12 C -0.226 4.226 13 N -0.564 5.564 14 Si 0.826 3.174 15 H -0.182 1.182 16 H -0.200 1.200 17 H -0.202 1.202 18 N -0.300 5.300 19 C -0.019 4.019 20 H 0.133 0.867 21 H 0.107 0.893 22 H 0.135 0.865 23 H 0.265 0.735 24 H 0.144 0.856 25 H 0.137 0.863 26 H 0.226 0.774 27 H 0.087 0.913 28 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -15.687 -0.646 0.211 15.702 hybrid contribution 0.516 0.464 0.493 0.852 sum -15.171 -0.182 0.705 15.188 Atomic orbital electron populations 1.21901 0.86645 1.06231 1.06839 1.21986 0.92733 0.82572 0.74453 1.90714 1.72158 1.33414 1.51295 1.43109 1.03488 1.10209 1.72045 1.18149 0.84974 1.02798 1.07573 1.21119 0.92974 0.96992 0.94463 1.21119 0.94465 1.03283 1.10219 1.18620 0.85647 0.91692 0.93715 1.40787 1.01097 1.28125 1.46796 1.20069 0.90218 1.07601 1.27113 0.87549 1.26256 0.97155 1.00205 0.98983 1.69822 1.09367 1.33866 1.43359 0.84695 0.77963 0.77231 0.77463 1.18181 1.19962 1.20174 1.67106 1.10703 1.28007 1.24228 1.22547 0.87532 0.97175 0.94608 0.86651 0.89307 0.86469 0.73503 0.85594 0.86341 0.77366 0.91329 0.79898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 10.32 71.24 0.74 -1.15 15 2 C 0.49 12.42 7.70 87.66 0.68 13.10 15 3 O -0.60 -22.12 14.77 -3.04 -0.04 -22.16 15 4 N -0.64 -15.19 5.36 -303.04 -1.62 -16.81 15 5 C -0.03 -1.18 6.31 38.25 0.24 -0.94 15 6 C -0.03 -1.16 8.76 22.55 0.20 -0.97 15 7 C -0.26 -12.28 9.33 22.51 0.21 -12.07 15 8 C 0.34 17.16 7.62 133.10 1.01 18.17 15 9 N -0.56 -30.41 5.44 -189.17 -1.03 -31.44 15 10 C -0.32 -17.46 9.54 84.03 0.80 -16.66 15 11 H 0.11 5.56 5.64 -2.91 -0.02 5.55 15 12 C -0.03 -1.39 5.50 84.86 0.47 -0.93 15 13 N -0.93 -51.92 13.05 21.64 0.28 -51.64 15 14 Si 1.00 41.81 29.55 68.60 2.03 43.84 15 15 H -0.26 -10.25 7.11 99.48 0.71 -9.54 15 16 H -0.27 -11.10 7.11 99.48 0.71 -10.39 15 17 H -0.28 -11.28 7.11 99.48 0.71 -10.57 15 18 N -0.58 -26.11 10.38 -192.67 -2.00 -28.11 15 19 C 0.15 5.12 11.11 84.82 0.94 6.07 15 20 H 0.12 0.80 8.14 -2.39 -0.02 0.78 15 21 H 0.09 1.17 8.12 -2.39 -0.02 1.15 15 22 H 0.12 0.74 8.14 -2.39 -0.02 0.72 15 23 H 0.43 5.91 8.82 -92.71 -0.82 5.09 15 24 H 0.13 5.09 6.47 -2.91 -0.02 5.07 15 25 H 0.12 5.58 5.93 -2.91 -0.02 5.57 15 26 H 0.39 22.25 8.01 -92.71 -0.74 21.50 15 27 H 0.28 14.51 8.31 -92.71 -0.77 13.74 15 28 H 0.18 4.62 8.06 -2.91 -0.02 4.60 15 Total: -1.00 -70.97 251.72 2.55 -68.42 By element: Atomic # 1 Polarization: 33.61 SS G_CDS: -0.34 Total: 33.26 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 5.28 Total: 4.64 kcal Atomic # 7 Polarization: -123.63 SS G_CDS: -4.37 Total: -128.00 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.04 Total: -22.16 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -70.97 2.55 -68.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182579.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.162 kcal (2) G-P(sol) polarization free energy of solvation -70.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds