Wall clock time and date at job start Sun Mar 29 2020 21:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50698 * 109.47218 * 2 1 4 4 C 1.38024 * 120.01651 * 265.02436 * 3 2 1 5 5 C 1.38776 * 120.03604 * 179.97438 * 4 3 2 6 6 O 1.35941 * 119.97146 * 180.02562 * 5 4 3 7 7 C 1.42893 * 117.00481 * 180.02562 * 6 5 4 8 8 C 1.38819 * 120.06590 * 0.02562 * 5 4 3 9 9 C 1.37984 * 120.03409 * 359.72180 * 8 5 4 10 10 C 1.39063 * 120.01985 * 85.00165 * 3 2 1 11 11 N 1.39407 * 120.03013 * 0.02562 * 10 3 2 12 12 C 1.36828 * 119.99660 * 180.02562 * 11 10 3 13 13 H 1.08002 * 120.00450 * 0.02562 * 12 11 10 14 14 C 1.38759 * 119.99675 * 179.72306 * 12 11 10 15 15 N 1.31614 * 120.00315 * 0.27465 * 14 12 11 16 16 Si 1.86803 * 119.99869 * 180.27637 * 14 12 11 17 17 H 1.48498 * 109.47174 * 90.00136 * 16 14 12 18 18 H 1.48501 * 109.47062 * 210.00087 * 16 14 12 19 19 H 1.48504 * 109.46913 * 329.99886 * 16 14 12 20 20 H 1.09003 * 109.47045 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47044 * 299.99927 * 1 2 3 22 22 H 1.09002 * 109.47196 * 60.00085 * 1 2 3 23 23 H 1.09002 * 109.47044 * 240.00073 * 2 1 3 24 24 H 1.08995 * 109.47379 * 120.00213 * 2 1 3 25 25 H 1.08000 * 119.98239 * 359.95277 * 4 3 2 26 26 H 1.09005 * 109.47110 * 300.00411 * 7 6 5 27 27 H 1.09001 * 109.47204 * 59.99759 * 7 6 5 28 28 H 1.08994 * 109.47620 * 180.02562 * 7 6 5 29 29 H 1.08001 * 119.98358 * 180.02562 * 8 5 4 30 30 H 1.07995 * 120.01880 * 180.28113 * 9 8 5 31 31 H 0.97000 * 119.99907 * 359.97438 * 11 10 3 32 32 H 0.96996 * 120.00453 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3602 2.0372 -1.1906 5 6 2.8223 3.3458 -1.1911 6 8 3.1444 3.9518 -2.3646 7 6 3.6141 5.2993 -2.2914 8 6 2.9561 4.0366 0.0055 9 6 2.6241 3.4248 1.1970 10 6 2.1653 2.1117 1.1995 11 7 1.8346 1.4904 2.4029 12 6 1.9652 2.1710 3.5826 13 1 2.3241 3.1897 3.5816 14 6 1.6306 1.5546 4.7799 15 7 1.1927 0.3135 4.7812 16 14 1.8016 2.4864 6.3899 17 1 0.5322 3.1970 6.6878 18 1 2.1026 1.5303 7.4856 19 1 2.9061 3.4725 6.2761 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8932 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 2.2574 1.5008 -2.1223 26 1 2.8470 5.9274 -1.8383 27 1 4.5189 5.3362 -1.6847 28 1 3.8342 5.6624 -3.2952 29 1 3.3154 5.0550 0.0035 30 1 2.7240 3.9640 2.1273 31 1 1.5111 0.5759 2.4037 32 1 0.9591 -0.1176 5.6181 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163183173.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:06 Heat of formation + Delta-G solvation = -21.484931 kcal Electronic energy + Delta-G solvation = -14795.335059 eV Core-core repulsion = 12334.768631 eV Total energy + Delta-G solvation = -2460.566428 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.27546 -37.47441 -34.51875 -33.04115 -31.59448 -29.15365 -27.65157 -26.29007 -24.47962 -23.11847 -21.06419 -19.87877 -17.71472 -16.91736 -16.27261 -15.23927 -15.03908 -14.44113 -14.12013 -13.78599 -13.22927 -12.93609 -12.54477 -12.36006 -11.97157 -11.75238 -11.46060 -11.32622 -11.31257 -10.84698 -10.70662 -10.55610 -10.40689 -10.19223 -9.60756 -9.57599 -8.48277 -7.91272 -6.50364 -6.39358 -3.66238 2.30788 2.62232 3.17858 3.18689 3.21411 4.06865 4.09722 4.65120 5.22513 5.32544 5.45593 5.53790 5.58577 5.66556 5.75847 5.85442 5.94113 6.04482 6.26277 6.36697 6.47067 6.49739 6.70002 6.83554 7.03214 7.15383 7.27167 7.46160 7.53815 7.63606 7.87107 8.35654 8.82168 9.43153 9.62953 10.67062 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030036 B = 0.008232 C = 0.006604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.004104 B = 3400.722536 C = 4238.681382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.067 4.067 3 C -0.175 4.175 4 C -0.080 4.080 5 C -0.008 4.008 6 O -0.332 6.332 7 C 0.037 3.963 8 C -0.140 4.140 9 C -0.193 4.193 10 C 0.195 3.805 11 N -0.567 5.567 12 C -0.298 4.298 13 H 0.099 0.901 14 C 0.017 3.983 15 N -0.897 5.897 16 Si 0.929 3.071 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.270 1.270 20 H 0.047 0.953 21 H 0.058 0.942 22 H 0.050 0.950 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.110 0.890 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.084 0.916 29 H 0.107 0.893 30 H 0.118 0.882 31 H 0.400 0.600 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.541 3.836 -7.586 8.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 C -0.182 4.182 4 C -0.100 4.100 5 C -0.055 4.055 6 O -0.248 6.248 7 C -0.059 4.059 8 C -0.160 4.160 9 C -0.217 4.217 10 C 0.076 3.924 11 N -0.173 5.173 12 C -0.428 4.428 13 H 0.117 0.883 14 C -0.185 4.185 15 N -0.535 5.535 16 Si 0.756 3.244 17 H -0.204 1.204 18 H -0.208 1.208 19 H -0.195 1.195 20 H 0.066 0.934 21 H 0.077 0.923 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.128 0.872 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.125 0.875 30 H 0.135 0.865 31 H 0.237 0.763 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.451 3.649 -7.283 8.274 hybrid contribution 0.009 0.357 1.113 1.169 sum 1.461 4.007 -6.170 7.500 Atomic orbital electron populations 1.21742 0.95827 1.00605 1.02062 1.20172 0.95410 0.93344 1.01482 1.18783 1.11433 0.96620 0.91338 1.19668 1.01469 0.92086 0.96740 1.18326 1.09265 0.93919 0.83946 1.85904 1.82269 1.26987 1.29598 1.22746 0.98291 0.82767 1.02097 1.20744 1.04121 0.98911 0.92228 1.20245 1.09477 0.94875 0.97125 1.17638 0.96577 0.92157 0.86035 1.40984 1.59664 1.14579 1.02045 1.19679 1.40974 0.98646 0.83482 0.88342 1.25219 0.97580 0.96096 0.99621 1.69686 1.43842 1.11626 1.28387 0.85871 0.78703 0.78893 0.80954 1.20396 1.20802 1.19509 0.93388 0.92333 0.93120 0.92159 0.91856 0.87229 0.93758 0.93745 0.89766 0.87497 0.86452 0.76349 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.89 37.15 0.37 -2.10 16 2 C -0.07 -1.21 5.50 -27.89 -0.15 -1.36 16 3 C -0.18 -3.61 5.15 -104.40 -0.54 -4.15 16 4 C -0.08 -1.58 9.61 -39.46 -0.38 -1.96 16 5 C -0.01 -0.16 6.69 -39.17 -0.26 -0.43 16 6 O -0.33 -5.95 10.50 -19.55 -0.21 -6.16 16 7 C 0.04 0.49 9.81 101.05 0.99 1.48 16 8 C -0.14 -2.76 9.03 -39.46 -0.36 -3.12 16 9 C -0.19 -4.23 9.30 -39.36 -0.37 -4.59 16 10 C 0.20 4.48 6.60 -83.79 -0.55 3.93 16 11 N -0.57 -14.10 5.34 -9.59 -0.05 -14.15 16 12 C -0.30 -7.75 9.55 -15.13 -0.14 -7.89 16 13 H 0.10 2.47 5.68 -52.49 -0.30 2.17 16 14 C 0.02 0.44 5.50 -17.45 -0.10 0.35 16 15 N -0.90 -24.24 13.05 55.49 0.72 -23.51 16 16 Si 0.93 20.14 29.55 -169.99 -5.02 15.12 16 17 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 20 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 22 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.06 0.96 8.05 -51.93 -0.42 0.54 16 24 H 0.06 1.22 6.81 -51.93 -0.35 0.86 16 25 H 0.11 1.94 8.06 -52.49 -0.42 1.52 16 26 H 0.04 0.56 7.66 -51.93 -0.40 0.16 16 27 H 0.04 0.56 7.66 -51.93 -0.40 0.16 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.11 1.81 6.29 -52.49 -0.33 1.48 16 30 H 0.12 2.56 5.95 -52.49 -0.31 2.25 16 31 H 0.40 10.07 5.99 -40.82 -0.24 9.83 16 32 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 269.42 15.07 4.06 4.06 Total: -1.00 -27.68 269.42 -5.99 -33.67 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -4.00 Total: 10.81 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -1.49 Total: -19.84 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.67 Total: -37.66 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.21 Total: -6.16 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.68 -5.99 -33.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183173.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.182 kcal (2) G-P(sol) polarization free energy of solvation -27.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds