Wall clock time and date at job start Sun Mar 29 2020 21:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50698 * 109.47218 * 2 1 4 4 C 1.38024 * 120.01651 * 265.02436 * 3 2 1 5 5 C 1.38776 * 120.03604 * 179.97438 * 4 3 2 6 6 O 1.35941 * 119.97146 * 180.02562 * 5 4 3 7 7 C 1.42893 * 117.00481 * 180.02562 * 6 5 4 8 8 C 1.38819 * 120.06590 * 0.02562 * 5 4 3 9 9 C 1.37984 * 120.03409 * 359.72180 * 8 5 4 10 10 C 1.39063 * 120.01985 * 85.00165 * 3 2 1 11 11 N 1.39407 * 120.03013 * 0.02562 * 10 3 2 12 12 C 1.36828 * 119.99660 * 180.02562 * 11 10 3 13 13 H 1.08002 * 120.00450 * 0.02562 * 12 11 10 14 14 C 1.38759 * 119.99675 * 179.72306 * 12 11 10 15 15 N 1.31614 * 120.00315 * 0.27465 * 14 12 11 16 16 Si 1.86803 * 119.99869 * 180.27637 * 14 12 11 17 17 H 1.48498 * 109.47174 * 90.00136 * 16 14 12 18 18 H 1.48501 * 109.47062 * 210.00087 * 16 14 12 19 19 H 1.48504 * 109.46913 * 329.99886 * 16 14 12 20 20 H 1.09003 * 109.47045 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47044 * 299.99927 * 1 2 3 22 22 H 1.09002 * 109.47196 * 60.00085 * 1 2 3 23 23 H 1.09002 * 109.47044 * 240.00073 * 2 1 3 24 24 H 1.08995 * 109.47379 * 120.00213 * 2 1 3 25 25 H 1.08000 * 119.98239 * 359.95277 * 4 3 2 26 26 H 1.09005 * 109.47110 * 300.00411 * 7 6 5 27 27 H 1.09001 * 109.47204 * 59.99759 * 7 6 5 28 28 H 1.08994 * 109.47620 * 180.02562 * 7 6 5 29 29 H 1.08001 * 119.98358 * 180.02562 * 8 5 4 30 30 H 1.07995 * 120.01880 * 180.28113 * 9 8 5 31 31 H 0.97000 * 119.99907 * 359.97438 * 11 10 3 32 32 H 0.96996 * 120.00453 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3602 2.0372 -1.1906 5 6 2.8223 3.3458 -1.1911 6 8 3.1444 3.9518 -2.3646 7 6 3.6141 5.2993 -2.2914 8 6 2.9561 4.0366 0.0055 9 6 2.6241 3.4248 1.1970 10 6 2.1653 2.1117 1.1995 11 7 1.8346 1.4904 2.4029 12 6 1.9652 2.1710 3.5826 13 1 2.3241 3.1897 3.5816 14 6 1.6306 1.5546 4.7799 15 7 1.1927 0.3135 4.7812 16 14 1.8016 2.4864 6.3899 17 1 0.5322 3.1970 6.6878 18 1 2.1026 1.5303 7.4856 19 1 2.9061 3.4725 6.2761 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8932 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 2.2574 1.5008 -2.1223 26 1 2.8470 5.9274 -1.8383 27 1 4.5189 5.3362 -1.6847 28 1 3.8342 5.6624 -3.2952 29 1 3.3154 5.0550 0.0035 30 1 2.7240 3.9640 2.1273 31 1 1.5111 0.5759 2.4037 32 1 0.9591 -0.1176 5.6181 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163183173.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:05 Heat of formation + Delta-G solvation = -37.277733 kcal Electronic energy + Delta-G solvation = -14796.019886 eV Core-core repulsion = 12334.768631 eV Total energy + Delta-G solvation = -2461.251255 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.84769 -39.00230 -36.25206 -34.55349 -33.41544 -30.68072 -29.19452 -27.66725 -26.28662 -24.59505 -22.74519 -21.41418 -19.52385 -18.43713 -17.90034 -16.92032 -16.32938 -16.12185 -15.66021 -15.30420 -14.82744 -14.52761 -14.09163 -13.89832 -13.57434 -13.28082 -13.01565 -12.90684 -12.74168 -12.37360 -12.34048 -12.10137 -12.04452 -11.71975 -11.25438 -11.19123 -10.26351 -9.51773 -8.39860 -8.12376 -5.60819 0.67204 0.96702 1.41694 1.48598 1.53447 2.31374 2.75130 2.91916 3.39168 3.57086 4.07484 4.13087 4.31663 4.43969 4.50006 4.52273 4.61367 4.75113 4.79636 4.85106 5.00095 5.08897 5.12441 5.37197 5.38570 5.42233 5.53640 5.77142 5.87879 5.92993 6.14850 6.85785 6.90829 7.62696 7.76193 8.79409 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030036 B = 0.008232 C = 0.006604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.004104 B = 3400.722536 C = 4238.681382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.066 4.066 3 C -0.171 4.171 4 C -0.091 4.091 5 C 0.007 3.993 6 O -0.342 6.342 7 C 0.025 3.975 8 C -0.144 4.144 9 C -0.208 4.208 10 C 0.171 3.829 11 N -0.592 5.592 12 C -0.312 4.312 13 H 0.099 0.901 14 C -0.035 4.035 15 N -0.936 5.936 16 Si 0.993 3.007 17 H -0.275 1.275 18 H -0.282 1.282 19 H -0.263 1.263 20 H 0.069 0.931 21 H 0.027 0.973 22 H 0.063 0.937 23 H 0.088 0.912 24 H 0.046 0.954 25 H 0.134 0.866 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.117 0.883 29 H 0.136 0.864 30 H 0.110 0.890 31 H 0.393 0.607 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.085 5.014 -9.433 10.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.104 4.104 3 C -0.178 4.178 4 C -0.110 4.110 5 C -0.039 4.039 6 O -0.257 6.257 7 C -0.070 4.070 8 C -0.163 4.163 9 C -0.233 4.233 10 C 0.056 3.944 11 N -0.202 5.202 12 C -0.442 4.442 13 H 0.117 0.883 14 C -0.232 4.232 15 N -0.577 5.577 16 Si 0.817 3.183 17 H -0.201 1.201 18 H -0.208 1.208 19 H -0.187 1.187 20 H 0.088 0.912 21 H 0.047 0.953 22 H 0.082 0.918 23 H 0.107 0.893 24 H 0.064 0.936 25 H 0.152 0.848 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.135 0.865 29 H 0.154 0.846 30 H 0.128 0.872 31 H 0.228 0.772 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.019 4.877 -9.196 10.604 hybrid contribution -0.078 0.126 1.329 1.338 sum 1.941 5.003 -7.867 9.523 Atomic orbital electron populations 1.21672 0.94896 1.01832 1.01123 1.20226 0.96155 0.92008 1.01979 1.19146 1.10045 0.97662 0.90925 1.19993 1.01169 0.92558 0.97256 1.18566 1.06784 0.93924 0.84661 1.85913 1.82061 1.29305 1.28427 1.23123 0.98700 0.80488 1.04659 1.20987 1.03695 1.00248 0.91357 1.20397 1.10109 0.94814 0.97951 1.18085 0.96956 0.92901 0.86440 1.40910 1.62453 1.14488 1.02333 1.19943 1.40982 0.98866 0.84434 0.88308 1.26038 0.97743 0.96952 1.02514 1.69799 1.46031 1.13082 1.28818 0.84896 0.78728 0.77661 0.76973 1.20110 1.20767 1.18696 0.91163 0.95325 0.91839 0.89304 0.93564 0.84774 0.92945 0.92931 0.86465 0.84643 0.87167 0.77187 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.57 9.89 71.98 0.71 -3.86 16 2 C -0.07 -2.35 5.50 29.84 0.16 -2.18 16 3 C -0.17 -6.93 5.15 -19.72 -0.10 -7.04 16 4 C -0.09 -3.35 9.61 22.35 0.21 -3.13 16 5 C 0.01 0.26 6.69 22.54 0.15 0.41 16 6 O -0.34 -10.98 10.50 -92.88 -0.97 -11.95 16 7 C 0.03 0.56 9.81 113.37 1.11 1.68 16 8 C -0.14 -5.35 9.03 22.35 0.20 -5.15 16 9 C -0.21 -9.09 9.30 22.42 0.21 -8.88 16 10 C 0.17 7.94 6.60 38.34 0.25 8.20 16 11 N -0.59 -30.55 5.34 -184.25 -0.98 -31.54 16 12 C -0.31 -16.78 9.55 84.04 0.80 -15.98 16 13 H 0.10 5.11 5.68 -2.91 -0.02 5.09 16 14 C -0.04 -1.86 5.50 84.85 0.47 -1.39 16 15 N -0.94 -52.51 13.05 21.64 0.28 -52.22 16 16 Si 0.99 42.22 29.55 68.60 2.03 44.25 16 17 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 18 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 20 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 21 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.09 2.61 8.05 -2.39 -0.02 2.59 16 24 H 0.05 1.80 6.81 -2.39 -0.02 1.79 16 25 H 0.13 4.28 8.06 -2.91 -0.02 4.25 16 26 H 0.05 1.12 7.66 -2.38 -0.02 1.10 16 27 H 0.05 1.12 7.66 -2.39 -0.02 1.10 16 28 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.14 4.18 6.29 -2.91 -0.02 4.16 16 30 H 0.11 4.89 5.95 -2.91 -0.02 4.87 16 31 H 0.39 20.76 5.99 -92.71 -0.56 20.20 16 32 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -60.12 269.42 5.11 -55.02 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: 0.57 Total: 33.78 kcal Atomic # 6 Polarization: -41.52 SS G_CDS: 4.19 Total: -37.33 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -0.70 Total: -83.76 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: -0.97 Total: -11.95 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -60.12 5.11 -55.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183173.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.741 kcal (2) G-P(sol) polarization free energy of solvation -60.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds