Wall clock time and date at job start Sun Mar 29 2020 22:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38208 * 120.78013 * 2 1 4 4 C 1.39158 * 119.19137 * 180.26564 * 3 2 1 5 5 N 1.39129 * 119.60463 * 179.75352 * 4 3 2 6 6 C 1.46499 * 120.00242 * 4.71579 * 5 4 3 7 7 C 1.46502 * 119.99695 * 184.72199 * 5 4 3 8 8 N 1.32422 * 120.78369 * 359.46599 * 4 3 2 9 9 C 1.31867 * 121.71559 * 0.26087 * 8 4 3 10 10 C 1.38922 * 120.72809 * 0.02562 * 9 8 4 11 11 N 1.39455 * 120.42696 * 179.97438 * 10 9 8 12 12 C 1.36829 * 120.00282 * 359.97438 * 11 10 9 13 13 H 1.08004 * 119.99594 * 0.02562 * 12 11 10 14 14 C 1.38745 * 120.00181 * 179.97438 * 12 11 10 15 15 N 1.31627 * 119.99841 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 120.00123 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47100 * 89.99862 * 16 14 12 18 18 H 1.48497 * 109.47087 * 210.00149 * 16 14 12 19 19 H 1.48502 * 109.46878 * 329.99875 * 16 14 12 20 20 H 1.08998 * 109.47620 * 270.25497 * 1 2 3 21 21 H 1.08998 * 109.47149 * 30.26261 * 1 2 3 22 22 H 1.09003 * 109.46464 * 150.25932 * 1 2 3 23 23 H 1.07995 * 120.40629 * 0.02562 * 3 2 1 24 24 H 1.09002 * 109.47391 * 270.00497 * 6 5 4 25 25 H 1.09001 * 109.46813 * 150.00553 * 6 5 4 26 26 H 1.09004 * 109.47041 * 30.00680 * 6 5 4 27 27 H 1.08994 * 109.47354 * 269.99619 * 7 5 4 28 28 H 1.09002 * 109.47278 * 29.99664 * 7 5 4 29 29 H 1.09006 * 109.46998 * 149.99185 * 7 5 4 30 30 H 1.08001 * 119.64181 * 180.02562 * 9 8 4 31 31 H 0.97002 * 119.99881 * 180.02562 * 11 10 9 32 32 H 0.97002 * 119.99815 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2143 1.1874 0.0000 4 6 3.6053 1.1488 -0.0056 5 7 4.3259 2.3390 -0.0109 6 6 3.6241 3.6207 0.0938 7 6 5.7865 2.3104 -0.1213 8 7 4.2513 -0.0071 -0.0003 9 6 3.6102 -1.1595 0.0053 10 6 2.2215 -1.1992 0.0053 11 7 1.5500 -2.4214 0.0107 12 6 2.2590 -3.5917 0.0155 13 1 3.3388 -3.5688 0.0155 14 6 1.5909 -4.8077 0.0214 15 7 2.2730 -5.9334 0.0266 16 14 -0.2768 -4.8472 0.0221 17 1 -0.7720 -4.8643 -1.3777 18 1 -0.7458 -6.0666 0.7281 19 1 -0.7971 -3.6422 0.7167 20 1 -0.3634 0.0046 1.0276 21 1 -0.3633 0.8876 -0.5179 22 1 -0.3632 -0.8924 -0.5098 23 1 1.6938 2.1336 0.0004 24 1 3.3735 3.9803 -0.9042 25 1 4.2668 4.3472 0.5911 26 1 2.7099 3.4881 0.6725 27 1 6.2253 2.2616 0.8752 28 1 6.0904 1.4351 -0.6954 29 1 6.1304 3.2133 -0.6259 30 1 4.1708 -2.0826 0.0099 31 1 0.5802 -2.4420 0.0103 32 1 1.8059 -6.7835 0.0303 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163183358.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:57 Heat of formation + Delta-G solvation = 54.883276 kcal Electronic energy + Delta-G solvation = -14760.517904 eV Core-core repulsion = 12335.555801 eV Total energy + Delta-G solvation = -2424.962103 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.50066 -36.65061 -34.62174 -32.96649 -31.73691 -28.68104 -27.99628 -26.64939 -24.94204 -23.40452 -21.46602 -19.93417 -18.28239 -16.48539 -15.99390 -15.63281 -14.75331 -14.55200 -13.91702 -13.61849 -13.44412 -13.16182 -12.62600 -12.31479 -12.17445 -12.08200 -11.98113 -11.64694 -11.54638 -11.45972 -10.92488 -10.71167 -10.60694 -10.01569 -9.03468 -8.66498 -8.51270 -8.06964 -6.40357 -6.28818 -3.66199 2.16386 2.53425 3.04363 3.07531 3.12292 3.63508 4.05564 4.73141 4.89966 5.20666 5.26361 5.41322 5.55904 5.58335 5.62931 5.76819 5.88676 5.95065 5.99470 6.04433 6.15976 6.19342 6.37186 6.63304 6.82527 7.04522 7.33889 7.56374 7.67685 7.90980 8.22107 8.61569 9.13386 9.33421 9.36038 10.71899 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046565 B = 0.007352 C = 0.006389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.169459 B = 3807.494019 C = 4381.818933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.139 4.139 3 C -0.169 4.169 4 C 0.285 3.715 5 N -0.635 5.635 6 C 0.111 3.889 7 C 0.115 3.885 8 N -0.493 5.493 9 C 0.048 3.952 10 C 0.135 3.865 11 N -0.595 5.595 12 C -0.298 4.298 13 H 0.117 0.883 14 C 0.036 3.964 15 N -0.883 5.883 16 Si 0.880 3.120 17 H -0.270 1.270 18 H -0.276 1.276 19 H -0.269 1.269 20 H 0.060 0.940 21 H 0.060 0.940 22 H 0.054 0.946 23 H 0.114 0.886 24 H 0.037 0.963 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.033 0.967 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.154 0.846 31 H 0.376 0.624 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.606 13.813 -0.081 13.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.154 4.154 3 C -0.194 4.194 4 C 0.053 3.947 5 N -0.357 5.357 6 C -0.034 4.034 7 C -0.029 4.029 8 N -0.207 5.207 9 C -0.117 4.117 10 C 0.017 3.983 11 N -0.207 5.207 12 C -0.427 4.427 13 H 0.134 0.866 14 C -0.167 4.167 15 N -0.521 5.521 16 Si 0.706 3.294 17 H -0.196 1.196 18 H -0.201 1.201 19 H -0.195 1.195 20 H 0.078 0.922 21 H 0.079 0.921 22 H 0.073 0.927 23 H 0.132 0.868 24 H 0.055 0.945 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.051 0.949 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.171 0.829 31 H 0.212 0.788 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.578 13.383 -0.079 13.396 hybrid contribution -2.215 -0.240 0.038 2.228 sum -2.793 13.143 -0.041 13.436 Atomic orbital electron populations 1.20459 0.92028 1.01572 1.01296 1.19216 0.94973 0.91526 1.09663 1.20759 0.92568 0.97210 1.08843 1.17724 0.87491 0.85736 1.03720 1.45582 1.04806 1.02087 1.83248 1.21389 0.97192 0.84721 1.00055 1.21254 0.80265 1.01297 1.00050 1.66815 1.40548 0.97187 1.16184 1.21870 0.89921 0.94339 1.05602 1.18393 0.92980 0.85794 1.01094 1.41029 1.06372 1.02596 1.70657 1.19382 0.94206 0.81769 1.47383 0.86559 1.24934 0.98629 0.95005 0.98106 1.69701 1.35709 0.97391 1.49284 0.86631 0.85317 0.78441 0.78985 1.19589 1.20111 1.19471 0.92153 0.92089 0.92676 0.86801 0.94480 0.92451 0.91977 0.94861 0.91126 0.93386 0.82894 0.78841 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.55 9.64 36.01 0.35 -1.21 16 2 C -0.14 -2.72 5.93 -104.13 -0.62 -3.34 16 3 C -0.17 -3.10 8.88 -39.25 -0.35 -3.45 16 4 C 0.28 5.57 7.37 -154.87 -1.14 4.42 16 5 N -0.64 -10.27 3.39 -189.60 -0.64 -10.92 16 6 C 0.11 1.32 10.06 59.85 0.60 1.93 16 7 C 0.12 1.64 10.42 59.85 0.62 2.26 16 8 N -0.49 -10.66 9.15 -12.19 -0.11 -10.77 16 9 C 0.05 1.10 10.47 -17.28 -0.18 0.92 16 10 C 0.14 3.03 6.63 -83.63 -0.55 2.47 16 11 N -0.60 -14.01 5.17 -9.49 -0.05 -14.06 16 12 C -0.30 -7.88 10.05 -15.13 -0.15 -8.04 16 13 H 0.12 3.24 5.93 -52.48 -0.31 2.93 16 14 C 0.04 0.97 5.50 -17.45 -0.10 0.87 16 15 N -0.88 -24.95 13.97 55.49 0.78 -24.18 16 16 Si 0.88 19.57 27.73 -169.99 -4.71 14.86 16 17 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.27 -5.63 6.52 56.52 0.37 -5.27 16 20 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 21 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 22 H 0.05 0.90 6.66 -51.93 -0.35 0.55 16 23 H 0.11 1.74 6.25 -52.49 -0.33 1.42 16 24 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.56 8.07 -51.93 -0.42 0.14 16 26 H 0.06 0.72 6.37 -51.93 -0.33 0.39 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 1.12 7.45 -51.93 -0.39 0.73 16 29 H 0.05 0.54 8.07 -51.93 -0.42 0.12 16 30 H 0.15 3.57 5.97 -52.49 -0.31 3.25 16 31 H 0.38 8.32 3.88 -40.82 -0.16 8.16 16 32 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 264.58 15.07 3.99 3.99 Total: -1.00 -29.12 264.58 -6.14 -35.26 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -3.87 Total: 8.98 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -1.52 Total: -3.15 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -0.03 Total: -59.93 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.71 Total: 14.86 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.12 -6.14 -35.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183358.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.146 kcal (2) G-P(sol) polarization free energy of solvation -29.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds