Wall clock time and date at job start Sun Mar 29 2020 22:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38208 * 120.78013 * 2 1 4 4 C 1.39158 * 119.19137 * 180.26564 * 3 2 1 5 5 N 1.39129 * 119.60463 * 179.75352 * 4 3 2 6 6 C 1.46499 * 120.00242 * 4.71579 * 5 4 3 7 7 C 1.46502 * 119.99695 * 184.72199 * 5 4 3 8 8 N 1.32422 * 120.78369 * 359.46599 * 4 3 2 9 9 C 1.31867 * 121.71559 * 0.26087 * 8 4 3 10 10 C 1.38922 * 120.72809 * 0.02562 * 9 8 4 11 11 N 1.39455 * 120.42696 * 179.97438 * 10 9 8 12 12 C 1.36829 * 120.00282 * 359.97438 * 11 10 9 13 13 H 1.08004 * 119.99594 * 0.02562 * 12 11 10 14 14 C 1.38745 * 120.00181 * 179.97438 * 12 11 10 15 15 N 1.31627 * 119.99841 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 120.00123 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47100 * 89.99862 * 16 14 12 18 18 H 1.48497 * 109.47087 * 210.00149 * 16 14 12 19 19 H 1.48502 * 109.46878 * 329.99875 * 16 14 12 20 20 H 1.08998 * 109.47620 * 270.25497 * 1 2 3 21 21 H 1.08998 * 109.47149 * 30.26261 * 1 2 3 22 22 H 1.09003 * 109.46464 * 150.25932 * 1 2 3 23 23 H 1.07995 * 120.40629 * 0.02562 * 3 2 1 24 24 H 1.09002 * 109.47391 * 270.00497 * 6 5 4 25 25 H 1.09001 * 109.46813 * 150.00553 * 6 5 4 26 26 H 1.09004 * 109.47041 * 30.00680 * 6 5 4 27 27 H 1.08994 * 109.47354 * 269.99619 * 7 5 4 28 28 H 1.09002 * 109.47278 * 29.99664 * 7 5 4 29 29 H 1.09006 * 109.46998 * 149.99185 * 7 5 4 30 30 H 1.08001 * 119.64181 * 180.02562 * 9 8 4 31 31 H 0.97002 * 119.99881 * 180.02562 * 11 10 9 32 32 H 0.97002 * 119.99815 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2143 1.1874 0.0000 4 6 3.6053 1.1488 -0.0056 5 7 4.3259 2.3390 -0.0109 6 6 3.6241 3.6207 0.0938 7 6 5.7865 2.3104 -0.1213 8 7 4.2513 -0.0071 -0.0003 9 6 3.6102 -1.1595 0.0053 10 6 2.2215 -1.1992 0.0053 11 7 1.5500 -2.4214 0.0107 12 6 2.2590 -3.5917 0.0155 13 1 3.3388 -3.5688 0.0155 14 6 1.5909 -4.8077 0.0214 15 7 2.2730 -5.9334 0.0266 16 14 -0.2768 -4.8472 0.0221 17 1 -0.7720 -4.8643 -1.3777 18 1 -0.7458 -6.0666 0.7281 19 1 -0.7971 -3.6422 0.7167 20 1 -0.3634 0.0046 1.0276 21 1 -0.3633 0.8876 -0.5179 22 1 -0.3632 -0.8924 -0.5098 23 1 1.6938 2.1336 0.0004 24 1 3.3735 3.9803 -0.9042 25 1 4.2668 4.3472 0.5911 26 1 2.7099 3.4881 0.6725 27 1 6.2253 2.2616 0.8752 28 1 6.0904 1.4351 -0.6954 29 1 6.1304 3.2133 -0.6259 30 1 4.1708 -2.0826 0.0099 31 1 0.5802 -2.4420 0.0103 32 1 1.8059 -6.7835 0.0303 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163183358.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:56 Heat of formation + Delta-G solvation = 36.533344 kcal Electronic energy + Delta-G solvation = -14761.313617 eV Core-core repulsion = 12335.555801 eV Total energy + Delta-G solvation = -2425.757815 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.10340 -38.16246 -36.19601 -34.58446 -33.55005 -30.16311 -29.27500 -28.00184 -26.64065 -24.88760 -23.13022 -21.43041 -20.09148 -18.07538 -17.52979 -17.24908 -16.22469 -16.00784 -15.54932 -15.11245 -14.83678 -14.67552 -14.34287 -13.60560 -13.58070 -13.37856 -13.27467 -13.22339 -12.82493 -12.69219 -12.41392 -12.37667 -12.27623 -11.92183 -10.85680 -10.20242 -10.12925 -9.61791 -8.36549 -7.89317 -5.66060 0.54764 0.91138 1.28091 1.36210 1.38710 2.23167 2.37294 2.95218 3.19810 3.37709 3.89182 4.10464 4.25101 4.35912 4.54674 4.60360 4.65042 4.70122 4.82669 4.92034 4.95599 5.02372 5.04337 5.13599 5.27225 5.50420 5.55257 5.82843 6.00366 6.37800 6.68793 6.77113 7.39031 7.47925 7.63877 8.79853 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046565 B = 0.007352 C = 0.006389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.169459 B = 3807.494019 C = 4381.818933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.120 4.120 3 C -0.170 4.170 4 C 0.294 3.706 5 N -0.638 5.638 6 C 0.102 3.898 7 C 0.111 3.889 8 N -0.520 5.520 9 C 0.022 3.978 10 C 0.112 3.888 11 N -0.611 5.611 12 C -0.300 4.300 13 H 0.080 0.920 14 C -0.024 4.024 15 N -0.940 5.940 16 Si 0.949 3.051 17 H -0.263 1.263 18 H -0.277 1.277 19 H -0.245 1.245 20 H 0.077 0.923 21 H 0.095 0.905 22 H 0.051 0.949 23 H 0.157 0.843 24 H 0.054 0.946 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.035 0.965 28 H 0.046 0.954 29 H 0.084 0.916 30 H 0.127 0.873 31 H 0.384 0.616 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.806 17.833 -0.046 18.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.134 4.134 3 C -0.194 4.194 4 C 0.059 3.941 5 N -0.359 5.359 6 C -0.041 4.041 7 C -0.032 4.032 8 N -0.236 5.236 9 C -0.140 4.140 10 C -0.002 4.002 11 N -0.228 5.228 12 C -0.430 4.430 13 H 0.097 0.903 14 C -0.221 4.221 15 N -0.581 5.581 16 Si 0.771 3.229 17 H -0.188 1.188 18 H -0.202 1.202 19 H -0.169 1.169 20 H 0.096 0.904 21 H 0.114 0.886 22 H 0.070 0.930 23 H 0.175 0.825 24 H 0.072 0.928 25 H 0.102 0.898 26 H 0.088 0.912 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.144 0.856 31 H 0.220 0.780 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.754 17.498 -0.043 17.713 hybrid contribution -1.323 -1.039 0.022 1.682 sum -4.077 16.459 -0.021 16.957 Atomic orbital electron populations 1.20612 0.88942 1.03186 1.02890 1.19796 0.97277 0.90528 1.05799 1.21207 0.92130 0.98538 1.07519 1.18334 0.88786 0.86269 1.00742 1.46029 1.05682 1.02316 1.81915 1.21712 0.97820 0.82978 1.01564 1.21356 0.79501 1.02055 1.00288 1.66801 1.41118 0.97643 1.18085 1.21615 0.90566 0.94250 1.07594 1.18672 0.92976 0.86746 1.01767 1.40691 1.06297 1.01798 1.73974 1.19199 0.93076 0.83496 1.47217 0.90268 1.25746 1.04005 0.94213 0.98160 1.69854 1.37832 0.98060 1.52392 0.85549 0.78763 0.79137 0.79418 1.18820 1.20220 1.16874 0.90424 0.88583 0.92983 0.82541 0.92800 0.89782 0.91156 0.94617 0.93531 0.89702 0.85601 0.77968 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.75 9.64 71.24 0.69 -2.06 16 2 C -0.12 -4.36 5.93 -19.54 -0.12 -4.48 16 3 C -0.17 -5.55 8.88 22.48 0.20 -5.35 16 4 C 0.29 10.83 7.37 133.02 0.98 11.81 16 5 N -0.64 -18.44 3.39 -753.78 -2.56 -20.99 16 6 C 0.10 1.89 10.06 127.77 1.28 3.18 16 7 C 0.11 2.90 10.42 127.77 1.33 4.23 16 8 N -0.52 -22.78 9.15 -192.49 -1.76 -24.54 16 9 C 0.02 1.06 10.47 84.85 0.89 1.95 16 10 C 0.11 5.06 6.63 38.42 0.25 5.32 16 11 N -0.61 -29.23 5.17 -183.94 -0.95 -30.18 16 12 C -0.30 -16.78 10.05 84.03 0.84 -15.94 16 13 H 0.08 4.87 5.93 -2.91 -0.02 4.85 16 14 C -0.02 -1.32 5.50 84.84 0.47 -0.86 16 15 N -0.94 -56.22 13.97 21.64 0.30 -55.91 16 16 Si 0.95 40.83 27.73 68.60 1.90 42.73 16 17 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 18 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 19 H -0.24 -9.39 6.52 99.48 0.65 -8.74 16 20 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 21 H 0.10 2.01 8.10 -2.39 -0.02 1.99 16 22 H 0.05 1.51 6.66 -2.39 -0.02 1.49 16 23 H 0.16 3.80 6.25 -2.91 -0.02 3.78 16 24 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.08 1.17 8.07 -2.39 -0.02 1.15 16 26 H 0.07 1.22 6.37 -2.38 -0.02 1.20 16 27 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.05 1.44 7.45 -2.39 -0.02 1.42 16 29 H 0.08 1.59 8.07 -2.38 -0.02 1.57 16 30 H 0.13 6.54 5.97 -2.91 -0.02 6.52 16 31 H 0.38 16.61 3.88 -92.71 -0.36 16.25 16 32 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -67.22 264.58 4.47 -62.75 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: 0.71 Total: 28.35 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 6.82 Total: -2.20 kcal Atomic # 7 Polarization: -126.67 SS G_CDS: -4.97 Total: -131.63 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 1.90 Total: 42.73 kcal Total: -67.22 4.47 -62.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183358.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.282 kcal (2) G-P(sol) polarization free energy of solvation -67.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds