Wall clock time and date at job start Sun Mar 29 2020 21:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47324 * 2 1 4 4 O 1.42904 * 109.47243 * 239.99910 * 2 1 3 5 5 C 1.50699 * 109.47298 * 120.00011 * 2 1 3 6 6 C 1.38076 * 120.04327 * 121.63379 * 5 2 1 7 7 C 1.38310 * 120.08701 * 179.70157 * 6 5 2 8 8 C 1.38355 * 120.17906 * 0.29954 * 7 6 5 9 9 C 1.38027 * 120.08993 * 359.97438 * 8 7 6 10 10 C 1.39059 * 120.04581 * 301.91049 * 5 2 1 11 11 N 1.39300 * 120.08778 * 0.02562 * 10 5 2 12 12 C 1.36854 * 119.99495 * 174.25182 * 11 10 5 13 13 H 1.07998 * 120.00444 * 0.02562 * 12 11 10 14 14 C 1.38794 * 119.99625 * 180.02562 * 12 11 10 15 15 N 1.31594 * 120.00072 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00090 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.47303 * 89.99635 * 16 14 12 18 18 H 1.48498 * 109.47046 * 210.00217 * 16 14 12 19 19 H 1.48500 * 109.46950 * 329.99620 * 16 14 12 20 20 H 1.09000 * 109.47005 * 305.30599 * 1 2 3 21 21 H 1.08998 * 109.47341 * 65.30161 * 1 2 3 22 22 H 1.09000 * 109.47437 * 185.30375 * 1 2 3 23 23 H 1.09006 * 109.47400 * 175.08589 * 3 2 1 24 24 H 1.09005 * 109.47430 * 295.08803 * 3 2 1 25 25 H 1.08994 * 109.47219 * 55.08791 * 3 2 1 26 26 H 0.96703 * 113.99417 * 59.99490 * 4 2 1 27 27 H 1.08002 * 119.96135 * 359.97438 * 6 5 2 28 28 H 1.08002 * 119.91204 * 180.27416 * 7 6 5 29 29 H 1.08008 * 119.95444 * 179.97438 * 8 7 6 30 30 H 1.08006 * 120.04137 * 179.97438 * 9 8 7 31 31 H 0.96993 * 120.00053 * 354.25808 * 11 10 5 32 32 H 0.97001 * 119.99841 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0323 -0.7104 1.2304 6 6 2.8538 -1.8131 1.1050 7 6 3.3204 -2.4621 2.2338 8 6 2.9614 -2.0134 3.4924 9 6 2.1360 -0.9152 3.6262 10 6 1.6645 -0.2598 2.4935 11 7 0.8308 0.8485 2.6242 12 6 0.3748 1.2198 3.8600 13 1 0.6617 0.6538 4.7339 14 6 -0.4563 2.3237 3.9902 15 7 -0.8943 2.6810 5.1785 16 14 -0.9530 3.3023 2.4785 17 1 -2.2045 2.7379 1.9126 18 1 -1.1767 4.7203 2.8584 19 1 0.1277 3.2267 1.4628 20 1 -0.3633 0.5939 0.8387 21 1 -0.3634 0.4294 -0.9336 22 1 -0.3634 -1.0232 0.0950 23 1 3.1265 1.4437 0.0880 24 1 1.7503 1.9303 -0.9307 25 1 1.6066 1.9810 0.8427 26 1 1.7209 -0.2701 -1.9979 27 1 3.1360 -2.1667 0.1244 28 1 3.9664 -3.3216 2.1325 29 1 3.3275 -2.5232 4.3714 30 1 1.8559 -0.5659 4.6091 31 1 0.5735 1.3570 1.8394 32 1 -1.4755 3.4524 5.2693 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163183570.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:57 Heat of formation + Delta-G solvation = -10.980302 kcal Electronic energy + Delta-G solvation = -15460.439182 eV Core-core repulsion = 13000.328270 eV Total energy + Delta-G solvation = -2460.110913 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.52310 -36.82600 -35.21015 -32.54699 -31.57192 -29.20125 -28.27390 -27.04096 -24.47398 -22.37477 -20.87266 -20.15791 -17.81969 -16.49003 -16.26160 -15.59016 -14.86251 -14.02172 -13.67729 -13.56668 -13.37294 -13.27824 -12.84296 -12.44190 -12.07430 -11.80676 -11.68588 -11.42921 -11.22915 -10.96014 -10.75803 -10.33560 -10.25670 -9.98862 -9.84262 -9.66610 -8.79570 -7.89025 -6.82814 -6.46435 -3.76233 2.33900 2.55148 2.93491 2.99991 3.05090 3.97914 4.50153 4.63471 4.82965 5.12204 5.14043 5.31288 5.50536 5.74314 5.86977 5.90382 5.97161 6.02449 6.15792 6.35843 6.42576 6.54501 6.64176 6.80156 7.00189 7.28966 7.40165 7.50871 7.64961 7.81514 7.98777 8.08813 8.58185 9.24982 9.29808 10.65936 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027124 B = 0.012436 C = 0.009045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.037041 B = 2250.926894 C = 3094.785451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.185 3.815 3 C -0.189 4.189 4 O -0.555 6.555 5 C -0.203 4.203 6 C -0.039 4.039 7 C -0.240 4.240 8 C -0.066 4.066 9 C -0.210 4.210 10 C 0.226 3.774 11 N -0.602 5.602 12 C -0.303 4.303 13 H 0.119 0.881 14 C 0.038 3.962 15 N -0.881 5.881 16 Si 0.866 3.134 17 H -0.267 1.267 18 H -0.273 1.273 19 H -0.266 1.266 20 H 0.069 0.931 21 H 0.054 0.946 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.368 0.632 27 H 0.113 0.887 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.122 0.878 31 H 0.381 0.619 32 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.351 -3.116 -9.662 10.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.145 3.855 3 C -0.246 4.246 4 O -0.360 6.360 5 C -0.210 4.210 6 C -0.058 4.058 7 C -0.262 4.262 8 C -0.085 4.085 9 C -0.234 4.234 10 C 0.109 3.891 11 N -0.215 5.215 12 C -0.432 4.432 13 H 0.136 0.864 14 C -0.165 4.165 15 N -0.518 5.518 16 Si 0.693 3.307 17 H -0.193 1.193 18 H -0.198 1.198 19 H -0.192 1.192 20 H 0.088 0.912 21 H 0.073 0.927 22 H 0.088 0.912 23 H 0.086 0.914 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.214 0.786 27 H 0.131 0.869 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.140 0.860 31 H 0.222 0.778 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.310 -3.144 -8.846 9.955 hybrid contribution -0.791 1.293 -1.273 1.979 sum 2.519 -1.851 -10.119 10.590 Atomic orbital electron populations 1.22695 0.96385 1.03506 1.01931 1.19582 0.91450 0.90012 0.84488 1.22740 1.02973 0.96807 1.02104 1.86527 1.77129 1.57067 1.15252 1.18572 1.09708 1.02395 0.90300 1.20406 0.94381 0.93295 0.97695 1.20462 1.08879 1.04177 0.92697 1.20719 0.96040 0.95252 0.96469 1.20530 1.05306 1.00124 0.97462 1.17408 0.91038 0.88214 0.92399 1.41844 1.45279 1.25713 1.08705 1.19481 1.26101 1.11833 0.85756 0.86397 1.24937 0.97429 0.97240 0.96866 1.69672 1.33656 1.26989 1.21521 0.86904 0.79732 0.81148 0.82961 1.19277 1.19792 1.19173 0.91192 0.92725 0.91247 0.91356 0.92685 0.91054 0.78550 0.86885 0.88207 0.87803 0.86021 0.77813 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.18 8.47 37.15 0.31 -2.87 16 2 C 0.19 3.24 1.12 -91.78 -0.10 3.14 16 3 C -0.19 -3.17 8.52 37.15 0.32 -2.85 16 4 O -0.55 -8.51 11.46 -35.23 -0.40 -8.91 16 5 C -0.20 -4.13 4.80 -104.38 -0.50 -4.63 16 6 C -0.04 -0.75 9.37 -39.61 -0.37 -1.12 16 7 C -0.24 -4.46 10.04 -39.51 -0.40 -4.86 16 8 C -0.07 -1.26 10.04 -39.62 -0.40 -1.66 16 9 C -0.21 -4.61 9.29 -39.34 -0.37 -4.97 16 10 C 0.23 5.08 6.25 -83.84 -0.52 4.56 16 11 N -0.60 -14.18 3.97 -9.60 -0.04 -14.22 16 12 C -0.30 -8.01 10.03 -15.10 -0.15 -8.16 16 13 H 0.12 3.30 5.96 -52.49 -0.31 2.99 16 14 C 0.04 1.02 5.50 -17.45 -0.10 0.93 16 15 N -0.88 -24.78 13.97 55.49 0.77 -24.01 16 16 Si 0.87 19.33 27.51 -169.99 -4.68 14.65 16 17 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.27 -5.53 5.45 56.52 0.31 -5.22 16 20 H 0.07 1.34 4.91 -51.93 -0.25 1.09 16 21 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 23 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 1.36 4.19 -51.93 -0.22 1.14 16 26 H 0.37 3.93 9.05 45.56 0.41 4.34 16 27 H 0.11 2.04 7.00 -52.49 -0.37 1.67 16 28 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 29 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 30 H 0.12 2.75 6.01 -52.48 -0.32 2.43 16 31 H 0.38 8.40 0.60 -40.82 -0.02 8.38 16 32 H 0.27 7.21 8.31 -40.82 -0.34 6.88 16 LS Contribution 254.72 15.07 3.84 3.84 Total: -1.00 -28.33 254.72 -5.63 -33.95 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -2.85 Total: 17.20 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: -2.28 Total: -22.51 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.74 Total: -38.22 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -0.40 Total: -8.91 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.68 Total: 14.65 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -28.33 -5.63 -33.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183570.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.974 kcal (2) G-P(sol) polarization free energy of solvation -28.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds