Wall clock time and date at job start Sun Mar 29 2020 21:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47324 * 2 1 4 4 O 1.42904 * 109.47243 * 239.99910 * 2 1 3 5 5 C 1.50699 * 109.47298 * 120.00011 * 2 1 3 6 6 C 1.38076 * 120.04327 * 121.63379 * 5 2 1 7 7 C 1.38310 * 120.08701 * 179.70157 * 6 5 2 8 8 C 1.38355 * 120.17906 * 0.29954 * 7 6 5 9 9 C 1.38027 * 120.08993 * 359.97438 * 8 7 6 10 10 C 1.39059 * 120.04581 * 301.91049 * 5 2 1 11 11 N 1.39300 * 120.08778 * 0.02562 * 10 5 2 12 12 C 1.36854 * 119.99495 * 174.25182 * 11 10 5 13 13 H 1.07998 * 120.00444 * 0.02562 * 12 11 10 14 14 C 1.38794 * 119.99625 * 180.02562 * 12 11 10 15 15 N 1.31594 * 120.00072 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00090 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.47303 * 89.99635 * 16 14 12 18 18 H 1.48498 * 109.47046 * 210.00217 * 16 14 12 19 19 H 1.48500 * 109.46950 * 329.99620 * 16 14 12 20 20 H 1.09000 * 109.47005 * 305.30599 * 1 2 3 21 21 H 1.08998 * 109.47341 * 65.30161 * 1 2 3 22 22 H 1.09000 * 109.47437 * 185.30375 * 1 2 3 23 23 H 1.09006 * 109.47400 * 175.08589 * 3 2 1 24 24 H 1.09005 * 109.47430 * 295.08803 * 3 2 1 25 25 H 1.08994 * 109.47219 * 55.08791 * 3 2 1 26 26 H 0.96703 * 113.99417 * 59.99490 * 4 2 1 27 27 H 1.08002 * 119.96135 * 359.97438 * 6 5 2 28 28 H 1.08002 * 119.91204 * 180.27416 * 7 6 5 29 29 H 1.08008 * 119.95444 * 179.97438 * 8 7 6 30 30 H 1.08006 * 120.04137 * 179.97438 * 9 8 7 31 31 H 0.96993 * 120.00053 * 354.25808 * 11 10 5 32 32 H 0.97001 * 119.99841 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0323 -0.7104 1.2304 6 6 2.8538 -1.8131 1.1050 7 6 3.3204 -2.4621 2.2338 8 6 2.9614 -2.0134 3.4924 9 6 2.1360 -0.9152 3.6262 10 6 1.6645 -0.2598 2.4935 11 7 0.8308 0.8485 2.6242 12 6 0.3748 1.2198 3.8600 13 1 0.6617 0.6538 4.7339 14 6 -0.4563 2.3237 3.9902 15 7 -0.8943 2.6810 5.1785 16 14 -0.9530 3.3023 2.4785 17 1 -2.2045 2.7379 1.9126 18 1 -1.1767 4.7203 2.8584 19 1 0.1277 3.2267 1.4628 20 1 -0.3633 0.5939 0.8387 21 1 -0.3634 0.4294 -0.9336 22 1 -0.3634 -1.0232 0.0950 23 1 3.1265 1.4437 0.0880 24 1 1.7503 1.9303 -0.9307 25 1 1.6066 1.9810 0.8427 26 1 1.7209 -0.2701 -1.9979 27 1 3.1360 -2.1667 0.1244 28 1 3.9664 -3.3216 2.1325 29 1 3.3275 -2.5232 4.3714 30 1 1.8559 -0.5659 4.6091 31 1 0.5735 1.3570 1.8394 32 1 -1.4755 3.4524 5.2693 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163183570.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:57 Heat of formation + Delta-G solvation = -29.725837 kcal Electronic energy + Delta-G solvation = -15461.252050 eV Core-core repulsion = 13000.328270 eV Total energy + Delta-G solvation = -2460.923780 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.06100 -38.20648 -36.92582 -34.25052 -33.13355 -30.73842 -29.95126 -28.32882 -26.33534 -23.87059 -22.53699 -21.72430 -19.58896 -18.14046 -17.60851 -17.03626 -16.62892 -15.37959 -15.28281 -15.14823 -14.99307 -14.80773 -14.42453 -13.93143 -13.88864 -13.14291 -13.11029 -13.01155 -12.69171 -12.48053 -12.38328 -12.03644 -11.93205 -11.52595 -11.31307 -11.09487 -10.68185 -9.47242 -8.56871 -8.43343 -5.77076 0.73765 0.91200 1.17559 1.27616 1.28731 2.14824 2.87707 3.13481 3.28358 3.31182 3.82434 3.95588 4.15062 4.31098 4.42337 4.51343 4.63682 4.72677 4.73495 4.96806 5.02216 5.04915 5.23504 5.24285 5.35738 5.56830 5.76266 5.84137 5.97072 6.01250 6.40150 6.68289 6.97202 7.37895 7.46016 8.72938 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027124 B = 0.012436 C = 0.009045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.037041 B = 2250.926894 C = 3094.785451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.188 3.812 3 C -0.187 4.187 4 O -0.557 6.557 5 C -0.203 4.203 6 C -0.048 4.048 7 C -0.223 4.223 8 C -0.068 4.068 9 C -0.237 4.237 10 C 0.207 3.793 11 N -0.615 5.615 12 C -0.306 4.306 13 H 0.083 0.917 14 C -0.019 4.019 15 N -0.935 5.935 16 Si 0.926 3.074 17 H -0.258 1.258 18 H -0.272 1.272 19 H -0.242 1.242 20 H 0.045 0.955 21 H 0.091 0.909 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.091 0.909 25 H 0.046 0.954 26 H 0.392 0.608 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.132 0.868 30 H 0.099 0.901 31 H 0.389 0.611 32 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.370 -4.021 -12.994 14.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.147 3.853 3 C -0.245 4.245 4 O -0.365 6.365 5 C -0.209 4.209 6 C -0.066 4.066 7 C -0.244 4.244 8 C -0.087 4.087 9 C -0.261 4.261 10 C 0.093 3.907 11 N -0.234 5.234 12 C -0.436 4.436 13 H 0.101 0.899 14 C -0.217 4.217 15 N -0.576 5.576 16 Si 0.749 3.251 17 H -0.183 1.183 18 H -0.197 1.197 19 H -0.166 1.166 20 H 0.064 0.936 21 H 0.110 0.890 22 H 0.081 0.919 23 H 0.083 0.917 24 H 0.110 0.890 25 H 0.064 0.936 26 H 0.242 0.758 27 H 0.151 0.849 28 H 0.153 0.847 29 H 0.149 0.851 30 H 0.117 0.883 31 H 0.231 0.769 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.375 -4.101 -12.230 13.621 hybrid contribution -0.898 1.280 -0.299 1.592 sum 3.477 -2.821 -12.529 13.305 Atomic orbital electron populations 1.22688 0.95998 1.02968 1.02851 1.19415 0.91627 0.90032 0.84219 1.22719 1.02569 0.96290 1.02904 1.86463 1.77114 1.57141 1.15773 1.19024 1.08703 1.02409 0.90814 1.20771 0.93984 0.92921 0.98967 1.20943 1.07395 1.04166 0.91895 1.21037 0.95058 0.94284 0.98293 1.20657 1.06923 1.01790 0.96764 1.17793 0.91070 0.88179 0.93617 1.41599 1.47121 1.27008 1.07633 1.19314 1.26301 1.11700 0.86254 0.89930 1.25692 0.97585 0.98369 1.00030 1.69817 1.35592 1.28207 1.23947 0.85949 0.80240 0.79218 0.79731 1.18285 1.19696 1.16615 0.93630 0.88999 0.91940 0.91691 0.89034 0.93565 0.75767 0.84854 0.84662 0.85060 0.88322 0.76885 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.82 8.47 71.98 0.61 -5.21 16 2 C 0.19 5.98 1.12 -11.54 -0.01 5.97 16 3 C -0.19 -5.70 8.52 71.98 0.61 -5.09 16 4 O -0.56 -14.52 11.46 -148.98 -1.71 -16.22 16 5 C -0.20 -7.87 4.80 -19.71 -0.09 -7.97 16 6 C -0.05 -1.69 9.37 22.25 0.21 -1.48 16 7 C -0.22 -7.49 10.04 22.31 0.22 -7.27 16 8 C -0.07 -2.51 10.04 22.25 0.22 -2.28 16 9 C -0.24 -10.62 9.29 22.43 0.21 -10.41 16 10 C 0.21 9.32 6.25 38.36 0.24 9.56 16 11 N -0.62 -29.53 3.97 -184.29 -0.73 -30.26 16 12 C -0.31 -17.06 10.03 84.04 0.84 -16.22 16 13 H 0.08 5.03 5.96 -2.91 -0.02 5.01 16 14 C -0.02 -1.04 5.50 84.86 0.47 -0.57 16 15 N -0.93 -55.39 13.97 21.65 0.30 -55.09 16 16 Si 0.93 40.24 27.51 68.60 1.89 42.13 16 17 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 19 H -0.24 -9.41 5.45 99.48 0.54 -8.87 16 20 H 0.04 1.66 4.91 -2.39 -0.01 1.65 16 21 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 22 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 24 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 25 H 0.05 1.66 4.19 -2.39 -0.01 1.65 16 26 H 0.39 6.25 9.05 -74.05 -0.67 5.58 16 27 H 0.13 4.20 7.00 -2.91 -0.02 4.18 16 28 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 29 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 30 H 0.10 4.80 6.01 -2.91 -0.02 4.78 16 31 H 0.39 17.00 0.60 -92.71 -0.06 16.95 16 32 H 0.28 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -63.82 254.72 3.54 -60.28 By element: Atomic # 1 Polarization: 39.88 SS G_CDS: 0.26 Total: 40.14 kcal Atomic # 6 Polarization: -44.50 SS G_CDS: 3.53 Total: -40.97 kcal Atomic # 7 Polarization: -84.92 SS G_CDS: -0.43 Total: -85.35 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -1.71 Total: -16.22 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 1.89 Total: 42.13 kcal Total: -63.82 3.54 -60.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183570.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.555 kcal (2) G-P(sol) polarization free energy of solvation -63.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds