Wall clock time and date at job start Sun Mar 29 2020 22:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47138 * 2 1 4 4 C 1.52997 * 109.46786 * 239.99844 * 2 1 3 5 5 C 1.50701 * 109.47323 * 120.00066 * 2 1 3 6 6 N 1.32241 * 120.50495 * 241.88543 * 5 2 1 7 7 C 1.31808 * 120.91260 * 180.26579 * 6 5 2 8 8 N 1.31840 * 121.97256 * 359.72456 * 7 6 5 9 9 C 1.32212 * 120.91498 * 0.02562 * 8 7 6 10 10 C 1.39422 * 120.50478 * 61.61884 * 5 2 1 11 11 N 1.39349 * 120.89076 * 0.02844 * 10 5 2 12 12 C 1.36836 * 119.99972 * 174.48834 * 11 10 5 13 13 H 1.07996 * 119.99817 * 359.97438 * 12 11 10 14 14 C 1.38801 * 119.99545 * 179.72618 * 12 11 10 15 15 N 1.31587 * 120.00257 * 0.26943 * 14 12 11 16 16 Si 1.86797 * 119.99692 * 180.27500 * 14 12 11 17 17 H 1.48500 * 109.47230 * 89.99592 * 16 14 12 18 18 H 1.48501 * 109.47290 * 209.99655 * 16 14 12 19 19 H 1.48504 * 109.47369 * 329.99628 * 16 14 12 20 20 H 1.09004 * 109.47002 * 306.18741 * 1 2 3 21 21 H 1.08999 * 109.47443 * 66.18513 * 1 2 3 22 22 H 1.08996 * 109.47038 * 186.18815 * 1 2 3 23 23 H 1.09004 * 109.47153 * 180.02562 * 3 2 1 24 24 H 1.09004 * 109.46753 * 299.99726 * 3 2 1 25 25 H 1.08994 * 109.47206 * 59.99838 * 3 2 1 26 26 H 1.09000 * 109.47518 * 293.98129 * 4 2 1 27 27 H 1.09002 * 109.47597 * 53.98227 * 4 2 1 28 28 H 1.09009 * 109.47019 * 173.98058 * 4 2 1 29 29 H 1.08005 * 119.01358 * 179.70637 * 7 6 5 30 30 H 1.07999 * 120.50488 * 179.97438 * 9 8 7 31 31 H 0.96994 * 119.99983 * 354.48786 * 11 10 5 32 32 H 0.96995 * 119.99743 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2304 6 7 2.7624 -0.0671 2.1260 7 6 3.2103 -0.6819 3.2024 8 7 2.9511 -1.9526 3.4393 9 6 2.2243 -2.6663 2.5964 10 6 1.7300 -2.0545 1.4447 11 7 0.9598 -2.7692 0.5294 12 6 0.7680 -4.1134 0.6988 13 1 1.2139 -4.6205 1.5417 14 6 -0.0038 -4.8242 -0.2098 15 7 -0.5467 -4.2065 -1.2370 16 14 -0.2720 -6.6578 0.0257 17 1 -1.4862 -6.8784 0.8518 18 1 -0.4497 -7.3062 -1.2984 19 1 0.9066 -7.2465 0.7110 20 1 -0.3633 0.6068 0.8295 21 1 -0.3634 0.4149 -0.9401 22 1 -0.3633 -1.0216 0.1108 23 1 3.1300 1.4425 -0.0005 24 1 1.6767 1.9563 -0.8901 25 1 1.6767 1.9563 0.8899 26 1 1.7672 -1.7753 -1.1970 27 1 1.5913 -0.2735 -2.1360 28 1 3.1247 -0.6289 -1.3048 29 1 3.8078 -0.1281 3.9115 30 1 2.0164 -3.7069 2.7968 31 1 0.5597 -2.3139 -0.2278 32 1 -1.0864 -4.7032 -1.8717 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163187552.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:45 Heat of formation + Delta-G solvation = 40.465458 kcal Electronic energy + Delta-G solvation = -15398.711590 eV Core-core repulsion = 12973.124284 eV Total energy + Delta-G solvation = -2425.587306 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.10565 -36.68311 -35.49152 -32.35598 -31.65750 -28.55354 -26.99823 -26.76751 -24.97542 -23.44683 -21.93011 -19.41946 -18.19945 -16.45199 -15.91808 -15.63147 -14.56816 -14.09843 -13.96967 -13.58237 -13.28951 -13.05742 -12.52596 -11.95779 -11.87490 -11.62144 -11.53455 -11.18491 -10.76845 -10.72230 -10.69862 -10.56034 -10.54222 -10.10932 -10.01555 -9.43840 -9.06601 -8.04597 -7.05760 -6.82054 -3.96985 2.23063 2.28693 3.05221 3.06057 3.09386 3.86885 4.66109 4.95450 5.00162 5.05969 5.27704 5.49572 5.56070 5.69705 5.77772 6.09427 6.12365 6.20110 6.27671 6.33317 6.37478 6.40790 6.54053 6.64158 6.80683 6.87994 6.99332 7.10093 7.38279 7.68704 8.23893 8.48669 9.03002 9.20972 9.39241 10.32785 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029938 B = 0.010424 C = 0.008167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.036769 B = 2685.370842 C = 3427.515614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.004 4.004 3 C -0.117 4.117 4 C -0.152 4.152 5 C 0.052 3.948 6 N -0.466 5.466 7 C 0.125 3.875 8 N -0.476 5.476 9 C 0.025 3.975 10 C 0.111 3.889 11 N -0.532 5.532 12 C -0.308 4.308 13 H 0.106 0.894 14 C 0.026 3.974 15 N -0.880 5.880 16 Si 0.936 3.064 17 H -0.274 1.274 18 H -0.279 1.279 19 H -0.266 1.266 20 H 0.053 0.947 21 H 0.058 0.942 22 H 0.066 0.934 23 H 0.055 0.945 24 H 0.044 0.956 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.167 0.833 30 H 0.152 0.848 31 H 0.409 0.591 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.996 3.957 -0.501 4.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.005 4.005 3 C -0.174 4.174 4 C -0.210 4.210 5 C -0.106 4.106 6 N -0.178 5.178 7 C -0.161 4.161 8 N -0.189 5.189 9 C -0.151 4.151 10 C -0.018 4.018 11 N -0.138 5.138 12 C -0.439 4.439 13 H 0.123 0.877 14 C -0.179 4.179 15 N -0.515 5.515 16 Si 0.761 3.239 17 H -0.199 1.199 18 H -0.204 1.204 19 H -0.190 1.190 20 H 0.073 0.927 21 H 0.077 0.923 22 H 0.085 0.915 23 H 0.074 0.926 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.184 0.816 30 H 0.169 0.831 31 H 0.252 0.748 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.314 4.143 -0.086 4.347 hybrid contribution -0.854 -1.262 -0.793 1.718 sum 0.460 2.881 -0.879 3.047 Atomic orbital electron populations 1.22012 0.94352 1.02811 1.01455 1.19168 0.94821 0.95379 0.91176 1.21569 1.01116 0.94279 1.00480 1.22052 1.00905 1.01950 0.96092 1.20475 1.02560 0.90088 0.97438 1.67589 1.08355 1.39450 1.02432 1.23568 1.06609 0.89291 0.96645 1.67821 1.11731 1.08458 1.30855 1.22292 1.01261 1.00154 0.91421 1.19316 0.96419 0.92843 0.93208 1.41637 1.42066 1.07738 1.22354 1.19861 1.29652 0.83320 1.11042 0.87683 1.25380 0.96014 1.01418 0.95092 1.69665 1.31432 1.37837 1.12598 0.85753 0.79306 0.80692 0.78125 1.19922 1.20448 1.18991 0.92748 0.92287 0.91540 0.92584 0.93730 0.92477 0.90909 0.92427 0.92857 0.81647 0.83090 0.74806 0.90978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 8.20 37.16 0.30 -2.31 16 2 C 0.00 -0.08 0.75 -155.66 -0.12 -0.20 16 3 C -0.12 -1.88 7.71 37.16 0.29 -1.59 16 4 C -0.15 -2.72 8.18 37.16 0.30 -2.42 16 5 C 0.05 1.11 5.61 -81.97 -0.46 0.65 16 6 N -0.47 -9.85 9.18 -10.60 -0.10 -9.95 16 7 C 0.13 2.61 12.28 -92.10 -1.13 1.48 16 8 N -0.48 -10.48 10.43 -14.37 -0.15 -10.63 16 9 C 0.03 0.57 10.56 -16.93 -0.18 0.39 16 10 C 0.11 2.51 6.23 -83.55 -0.52 1.99 16 11 N -0.53 -12.44 3.91 -9.42 -0.04 -12.48 16 12 C -0.31 -7.46 9.57 -15.11 -0.14 -7.61 16 13 H 0.11 2.44 5.80 -52.49 -0.30 2.13 16 14 C 0.03 0.63 5.50 -17.45 -0.10 0.53 16 15 N -0.88 -21.81 13.05 55.49 0.72 -21.08 16 16 Si 0.94 18.68 29.55 -169.99 -5.02 13.66 16 17 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 18 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 19 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 20 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 21 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 22 H 0.07 1.33 5.29 -51.93 -0.27 1.06 16 23 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.93 8.05 -51.93 -0.42 0.51 16 26 H 0.07 1.49 5.12 -51.93 -0.27 1.23 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.93 8.14 -51.92 -0.42 0.50 16 29 H 0.17 2.92 8.06 -52.48 -0.42 2.49 16 30 H 0.15 3.26 6.14 -52.49 -0.32 2.94 16 31 H 0.41 9.48 3.06 -40.82 -0.13 9.35 16 32 H 0.28 6.54 8.31 -40.82 -0.34 6.20 16 LS Contribution 260.66 15.07 3.93 3.93 Total: -1.00 -25.89 260.66 -6.21 -32.09 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -3.80 Total: 13.54 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -1.75 Total: -9.08 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 0.44 Total: -54.14 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.02 Total: 13.66 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -25.89 -6.21 -32.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187552.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.560 kcal (2) G-P(sol) polarization free energy of solvation -25.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds