Wall clock time and date at job start Sun Mar 29 2020 22:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47138 * 2 1 4 4 C 1.52997 * 109.46786 * 239.99844 * 2 1 3 5 5 C 1.50701 * 109.47323 * 120.00066 * 2 1 3 6 6 N 1.32241 * 120.50495 * 241.88543 * 5 2 1 7 7 C 1.31808 * 120.91260 * 180.26579 * 6 5 2 8 8 N 1.31840 * 121.97256 * 359.72456 * 7 6 5 9 9 C 1.32212 * 120.91498 * 0.02562 * 8 7 6 10 10 C 1.39422 * 120.50478 * 61.61884 * 5 2 1 11 11 N 1.39349 * 120.89076 * 0.02844 * 10 5 2 12 12 C 1.36836 * 119.99972 * 174.48834 * 11 10 5 13 13 H 1.07996 * 119.99817 * 359.97438 * 12 11 10 14 14 C 1.38801 * 119.99545 * 179.72618 * 12 11 10 15 15 N 1.31587 * 120.00257 * 0.26943 * 14 12 11 16 16 Si 1.86797 * 119.99692 * 180.27500 * 14 12 11 17 17 H 1.48500 * 109.47230 * 89.99592 * 16 14 12 18 18 H 1.48501 * 109.47290 * 209.99655 * 16 14 12 19 19 H 1.48504 * 109.47369 * 329.99628 * 16 14 12 20 20 H 1.09004 * 109.47002 * 306.18741 * 1 2 3 21 21 H 1.08999 * 109.47443 * 66.18513 * 1 2 3 22 22 H 1.08996 * 109.47038 * 186.18815 * 1 2 3 23 23 H 1.09004 * 109.47153 * 180.02562 * 3 2 1 24 24 H 1.09004 * 109.46753 * 299.99726 * 3 2 1 25 25 H 1.08994 * 109.47206 * 59.99838 * 3 2 1 26 26 H 1.09000 * 109.47518 * 293.98129 * 4 2 1 27 27 H 1.09002 * 109.47597 * 53.98227 * 4 2 1 28 28 H 1.09009 * 109.47019 * 173.98058 * 4 2 1 29 29 H 1.08005 * 119.01358 * 179.70637 * 7 6 5 30 30 H 1.07999 * 120.50488 * 179.97438 * 9 8 7 31 31 H 0.96994 * 119.99983 * 354.48786 * 11 10 5 32 32 H 0.96995 * 119.99743 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2304 6 7 2.7624 -0.0671 2.1260 7 6 3.2103 -0.6819 3.2024 8 7 2.9511 -1.9526 3.4393 9 6 2.2243 -2.6663 2.5964 10 6 1.7300 -2.0545 1.4447 11 7 0.9598 -2.7692 0.5294 12 6 0.7680 -4.1134 0.6988 13 1 1.2139 -4.6205 1.5417 14 6 -0.0038 -4.8242 -0.2098 15 7 -0.5467 -4.2065 -1.2370 16 14 -0.2720 -6.6578 0.0257 17 1 -1.4862 -6.8784 0.8518 18 1 -0.4497 -7.3062 -1.2984 19 1 0.9066 -7.2465 0.7110 20 1 -0.3633 0.6068 0.8295 21 1 -0.3634 0.4149 -0.9401 22 1 -0.3633 -1.0216 0.1108 23 1 3.1300 1.4425 -0.0005 24 1 1.6767 1.9563 -0.8901 25 1 1.6767 1.9563 0.8899 26 1 1.7672 -1.7753 -1.1970 27 1 1.5913 -0.2735 -2.1360 28 1 3.1247 -0.6289 -1.3048 29 1 3.8078 -0.1281 3.9115 30 1 2.0164 -3.7069 2.7968 31 1 0.5597 -2.3139 -0.2278 32 1 -1.0864 -4.7032 -1.8717 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187552.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:44 Heat of formation + Delta-G solvation = 27.110600 kcal Electronic energy + Delta-G solvation = -15399.290700 eV Core-core repulsion = 12973.124284 eV Total energy + Delta-G solvation = -2426.166416 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.79142 -38.28921 -37.13231 -34.12277 -33.33721 -30.28731 -28.40566 -28.19038 -26.68611 -25.11896 -23.65130 -20.98329 -19.91718 -18.17256 -17.52834 -17.36760 -16.25253 -15.71334 -15.57091 -15.13358 -14.80090 -14.58323 -14.16616 -13.57407 -13.53374 -13.06732 -12.92299 -12.59950 -12.50190 -12.32167 -12.24714 -12.06680 -11.96296 -11.73882 -11.56729 -11.11385 -10.82617 -9.76312 -8.82174 -8.59655 -5.80960 0.49589 0.56600 1.42877 1.47787 1.54221 2.21889 2.89571 3.24758 3.33685 3.44285 3.76887 3.81920 4.12386 4.19530 4.20806 4.54881 4.69926 4.78730 4.83470 4.88058 4.95026 5.01028 5.05773 5.19768 5.25400 5.39432 5.39891 5.58251 5.63910 5.98331 6.50368 6.69467 7.27749 7.44288 7.66339 8.56339 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029938 B = 0.010424 C = 0.008167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.036769 B = 2685.370842 C = 3427.515614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.007 4.007 3 C -0.109 4.109 4 C -0.146 4.146 5 C 0.055 3.945 6 N -0.469 5.469 7 C 0.129 3.871 8 N -0.485 5.485 9 C 0.007 3.993 10 C 0.097 3.903 11 N -0.543 5.543 12 C -0.331 4.331 13 H 0.106 0.894 14 C -0.014 4.014 15 N -0.911 5.911 16 Si 0.997 3.003 17 H -0.272 1.272 18 H -0.277 1.277 19 H -0.261 1.261 20 H 0.057 0.943 21 H 0.084 0.916 22 H 0.038 0.962 23 H 0.051 0.949 24 H 0.072 0.928 25 H 0.053 0.947 26 H 0.043 0.957 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.200 0.800 30 H 0.153 0.847 31 H 0.409 0.591 32 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.306 4.857 -0.546 5.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.008 4.008 3 C -0.167 4.167 4 C -0.205 4.205 5 C -0.104 4.104 6 N -0.182 5.182 7 C -0.158 4.158 8 N -0.198 5.198 9 C -0.168 4.168 10 C -0.029 4.029 11 N -0.151 5.151 12 C -0.461 4.461 13 H 0.124 0.876 14 C -0.216 4.216 15 N -0.547 5.547 16 Si 0.820 3.180 17 H -0.197 1.197 18 H -0.202 1.202 19 H -0.185 1.185 20 H 0.076 0.924 21 H 0.103 0.897 22 H 0.057 0.943 23 H 0.070 0.930 24 H 0.091 0.909 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.073 0.927 29 H 0.217 0.783 30 H 0.170 0.830 31 H 0.251 0.749 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.636 5.047 -0.111 5.306 hybrid contribution -0.853 -1.385 -0.690 1.767 sum 0.783 3.662 -0.801 3.829 Atomic orbital electron populations 1.21971 0.93838 1.01268 1.03033 1.19314 0.95184 0.96547 0.89779 1.21511 1.00794 0.92584 1.01769 1.22002 1.01177 1.00259 0.97026 1.21094 1.01271 0.89785 0.98209 1.67739 1.08587 1.39238 1.02604 1.24357 1.05514 0.89100 0.96812 1.67883 1.12013 1.09062 1.30859 1.22425 1.01896 1.00595 0.91854 1.19595 0.96390 0.93692 0.93229 1.41603 1.43114 1.07578 1.22815 1.20120 1.30364 0.84054 1.11522 0.87615 1.26160 0.95649 1.05062 0.94733 1.69747 1.32404 1.39147 1.13406 0.84835 0.79149 0.76065 0.77943 1.19701 1.20246 1.18516 0.92354 0.89727 0.94345 0.92984 0.90899 0.92763 0.93826 0.89904 0.92675 0.78342 0.83004 0.74874 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.84 8.20 71.98 0.59 -4.25 16 2 C -0.01 -0.25 0.75 -52.93 -0.04 -0.29 16 3 C -0.11 -3.19 7.71 71.98 0.56 -2.64 16 4 C -0.15 -5.06 8.18 71.98 0.59 -4.47 16 5 C 0.05 2.27 5.61 42.78 0.24 2.51 16 6 N -0.47 -18.99 9.18 -187.46 -1.72 -20.71 16 7 C 0.13 5.12 12.28 180.87 2.22 7.34 16 8 N -0.49 -20.91 10.43 -199.39 -2.08 -22.99 16 9 C 0.01 0.34 10.56 84.93 0.90 1.24 16 10 C 0.10 4.45 6.23 38.53 0.24 4.69 16 11 N -0.54 -25.90 3.91 -183.71 -0.72 -26.62 16 12 C -0.33 -16.31 9.57 84.05 0.80 -15.51 16 13 H 0.11 5.02 5.80 -2.91 -0.02 5.00 16 14 C -0.01 -0.69 5.50 84.86 0.47 -0.22 16 15 N -0.91 -45.77 13.05 21.65 0.28 -45.49 16 16 Si 1.00 38.43 29.55 68.60 2.03 40.45 16 17 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 18 H -0.28 -10.50 7.11 99.48 0.71 -9.79 16 19 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 20 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 21 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 22 H 0.04 1.53 5.29 -2.39 -0.01 1.52 16 23 H 0.05 1.56 8.10 -2.38 -0.02 1.54 16 24 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 25 H 0.05 1.61 8.05 -2.39 -0.02 1.59 16 26 H 0.04 1.79 5.12 -2.39 -0.01 1.77 16 27 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.20 6.38 8.06 -2.91 -0.02 6.36 16 30 H 0.15 6.69 6.14 -2.91 -0.02 6.67 16 31 H 0.41 19.31 3.06 -92.71 -0.28 19.03 16 32 H 0.28 13.30 8.31 -92.71 -0.77 12.53 16 Total: -1.00 -54.42 260.66 5.20 -49.22 By element: Atomic # 1 Polarization: 36.89 SS G_CDS: 0.85 Total: 37.74 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: 6.56 Total: -11.60 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -4.24 Total: -115.81 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.45 kcal Total: -54.42 5.20 -49.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187552.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.326 kcal (2) G-P(sol) polarization free energy of solvation -54.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds