Wall clock time and date at job start Sun Mar 29 2020 22:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47013 * 2 1 4 4 C 1.50701 * 109.47194 * 184.90346 * 3 2 1 5 5 C 1.38177 * 120.84077 * 265.48764 * 4 3 2 6 6 N 1.32532 * 119.19540 * 180.27350 * 5 4 3 7 7 C 1.31831 * 121.02257 * 359.48472 * 6 5 4 8 8 N 1.31697 * 121.84590 * 0.52701 * 7 6 5 9 9 C 1.33064 * 120.68947 * 359.74335 * 8 7 6 10 10 N 1.38526 * 120.53909 * 180.02562 * 9 8 7 11 11 C 1.46498 * 119.99854 * 268.07833 * 10 9 8 12 12 C 1.36935 * 119.99945 * 88.08008 * 10 9 8 13 13 H 1.08001 * 120.00080 * 350.93499 * 12 10 9 14 14 C 1.38845 * 119.99762 * 170.93922 * 12 10 9 15 15 N 1.31538 * 120.00188 * 7.16803 * 14 12 10 16 16 Si 1.86798 * 119.99975 * 187.16813 * 14 12 10 17 17 H 1.48501 * 109.47121 * 94.98612 * 16 14 12 18 18 H 1.48502 * 109.47404 * 214.98320 * 16 14 12 19 19 H 1.48500 * 109.47288 * 334.98347 * 16 14 12 20 20 H 1.08999 * 109.46897 * 300.00243 * 1 2 3 21 21 H 1.08996 * 109.46845 * 59.99855 * 1 2 3 22 22 H 1.08998 * 109.47134 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47492 * 240.00155 * 2 1 3 24 24 H 1.08997 * 109.47337 * 119.99556 * 2 1 3 25 25 H 1.09005 * 109.47349 * 64.90587 * 3 2 1 26 26 H 1.08997 * 109.47738 * 304.90472 * 3 2 1 27 27 H 1.07995 * 120.40289 * 359.97438 * 5 4 3 28 28 H 1.08001 * 119.07445 * 180.26973 * 7 6 5 29 29 H 1.09009 * 109.47199 * 5.01718 * 11 10 9 30 30 H 1.08997 * 109.46994 * 125.01991 * 11 10 9 31 31 H 1.09004 * 109.47023 * 245.02386 * 11 10 9 32 32 H 0.97004 * 119.99874 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5421 1.4443 -0.1214 5 6 4.3436 1.5047 1.0025 6 7 5.6610 1.5099 0.8576 7 6 6.2132 1.4482 -0.3379 8 7 5.4885 1.3895 -1.4359 9 6 4.1594 1.3853 -1.3730 10 7 3.4001 1.3229 -2.5300 11 6 2.9561 2.5572 -3.1822 12 6 3.0646 0.1074 -3.0640 13 1 3.5093 -0.7956 -2.6727 14 6 2.1527 0.0360 -4.1085 15 7 1.7182 1.1388 -4.6789 16 14 1.5427 -1.6262 -4.7039 17 1 0.2600 -1.9529 -4.0308 18 1 1.3327 -1.5793 -6.1732 19 1 2.5506 -2.6680 -4.3810 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5137 0.8900 25 1 1.7502 1.9304 0.9307 26 1 1.6068 1.9811 -0.8427 27 1 3.9019 1.5521 1.9869 28 1 7.2902 1.4501 -0.4192 29 1 3.3899 3.4157 -2.6691 30 1 3.2793 2.5547 -4.2231 31 1 1.8687 2.6199 -3.1394 32 1 1.0808 1.0888 -5.4085 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166798695.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:18 Heat of formation + Delta-G solvation = 52.770503 kcal Electronic energy + Delta-G solvation = -15420.208356 eV Core-core repulsion = 12995.154637 eV Total energy + Delta-G solvation = -2425.053719 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.83613 -37.92914 -36.14995 -34.35464 -33.07783 -31.68531 -28.25640 -27.74455 -26.08021 -24.04336 -23.13010 -21.91545 -19.40153 -18.59797 -18.08086 -16.52881 -15.82347 -15.72772 -15.57325 -15.27580 -14.75371 -14.59869 -14.04631 -13.93160 -13.27769 -12.98211 -12.78744 -12.70426 -12.65229 -12.18068 -12.10252 -12.01318 -11.50493 -11.44553 -11.32649 -10.73023 -10.12963 -9.95617 -9.24099 -7.87313 -5.38437 0.12045 0.28136 1.44387 1.44848 1.53567 2.38267 2.95094 3.04684 3.24290 3.40684 3.79421 3.97805 4.04534 4.28417 4.36831 4.50320 4.59717 4.74759 4.84806 4.99344 5.04473 5.09509 5.32581 5.35947 5.46194 5.54020 5.62162 5.64247 5.70976 6.20757 6.25465 7.01930 7.32341 7.75460 8.07805 9.11714 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025736 B = 0.011691 C = 0.009629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.708735 B = 2394.457789 C = 2907.277644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.115 4.115 3 C -0.049 4.049 4 C -0.194 4.194 5 C 0.148 3.852 6 N -0.541 5.541 7 C 0.281 3.719 8 N -0.575 5.575 9 C 0.422 3.578 10 N -0.567 5.567 11 C 0.196 3.804 12 C -0.252 4.252 13 H 0.062 0.938 14 C -0.031 4.031 15 N -0.932 5.932 16 Si 0.968 3.032 17 H -0.276 1.276 18 H -0.290 1.290 19 H -0.277 1.277 20 H 0.074 0.926 21 H 0.034 0.966 22 H 0.055 0.945 23 H 0.043 0.957 24 H 0.069 0.931 25 H 0.097 0.903 26 H 0.053 0.947 27 H 0.201 0.799 28 H 0.215 0.785 29 H 0.006 0.994 30 H 0.025 0.975 31 H 0.040 0.960 32 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.304 0.257 11.044 11.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.087 4.087 4 C -0.202 4.202 5 C -0.017 4.017 6 N -0.255 5.255 7 C -0.007 4.007 8 N -0.294 5.294 9 C 0.187 3.813 10 N -0.289 5.289 11 C 0.052 3.948 12 C -0.380 4.380 13 H 0.080 0.920 14 C -0.227 4.227 15 N -0.579 5.579 16 Si 0.795 3.205 17 H -0.202 1.202 18 H -0.216 1.216 19 H -0.202 1.202 20 H 0.092 0.908 21 H 0.054 0.946 22 H 0.074 0.926 23 H 0.062 0.938 24 H 0.087 0.913 25 H 0.115 0.885 26 H 0.072 0.928 27 H 0.217 0.783 28 H 0.231 0.769 29 H 0.024 0.976 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.557 0.292 10.767 10.785 hybrid contribution -0.933 -0.738 -1.044 1.583 sum -0.376 -0.446 9.722 9.740 Atomic orbital electron populations 1.21657 0.94888 1.01598 1.01567 1.21430 0.96480 0.95843 1.01480 1.20247 0.87979 0.98005 1.02486 1.22439 1.00166 1.03317 0.94246 1.23554 0.88320 0.90479 0.99376 1.68418 1.13519 1.15923 1.27613 1.25236 1.01677 0.91511 0.82325 1.68587 1.09539 1.15473 1.35756 1.18879 0.86707 0.87104 0.88626 1.41380 1.57545 1.04515 1.25430 1.20788 0.97477 0.82281 0.94205 1.19080 1.20058 0.83931 1.14887 0.92032 1.25487 0.98713 1.00400 0.98068 1.70323 1.35013 1.26458 1.26077 0.85255 0.78637 0.79450 0.77150 1.20236 1.21637 1.20203 0.90750 0.94640 0.92628 0.93833 0.91271 0.88466 0.92830 0.78282 0.76912 0.97564 0.95666 0.94188 0.93799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 9.91 71.98 0.71 -3.30 16 2 C -0.11 -3.75 5.92 30.60 0.18 -3.57 16 3 C -0.05 -1.59 5.12 29.85 0.15 -1.44 16 4 C -0.19 -7.07 5.19 -19.53 -0.10 -7.18 16 5 C 0.15 4.46 10.98 84.57 0.93 5.38 16 6 N -0.54 -17.55 10.43 -200.29 -2.09 -19.64 16 7 C 0.28 9.81 12.28 180.90 2.22 12.03 16 8 N -0.58 -25.18 10.47 -197.54 -2.07 -27.25 16 9 C 0.42 19.07 5.99 133.16 0.80 19.87 16 10 N -0.57 -29.02 2.28 -540.58 -1.23 -30.25 16 11 C 0.20 9.97 8.45 127.77 1.08 11.05 16 12 C -0.25 -13.74 8.26 84.04 0.69 -13.04 16 13 H 0.06 3.44 7.84 -2.91 -0.02 3.42 16 14 C -0.03 -1.71 5.45 84.88 0.46 -1.24 16 15 N -0.93 -52.49 9.48 21.65 0.21 -52.29 16 16 Si 0.97 44.21 29.56 68.60 2.03 46.24 16 17 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 18 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 20 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 21 H 0.03 1.16 8.14 -2.39 -0.02 1.15 16 22 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.04 1.80 6.55 -2.39 -0.02 1.78 16 24 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.10 2.38 8.08 -2.38 -0.02 2.36 16 26 H 0.05 2.10 7.24 -2.39 -0.02 2.08 16 27 H 0.20 4.13 8.06 -2.91 -0.02 4.10 16 28 H 0.21 5.70 8.06 -2.91 -0.02 5.67 16 29 H 0.01 0.27 7.90 -2.38 -0.02 0.25 16 30 H 0.02 1.40 7.09 -2.39 -0.02 1.38 16 31 H 0.04 2.11 7.02 -2.38 -0.02 2.09 16 32 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 Total: -1.00 -63.17 269.81 5.07 -58.10 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: 1.10 Total: 6.53 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: 7.13 Total: 18.56 kcal Atomic # 7 Polarization: -124.24 SS G_CDS: -5.19 Total: -129.43 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -63.17 5.07 -58.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166798695.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.872 kcal (2) G-P(sol) polarization free energy of solvation -63.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds