Wall clock time and date at job start Sun Mar 29 2020 22:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38164 * 120.33227 * 2 1 4 4 N 1.31870 * 120.86543 * 179.72115 * 3 2 1 5 5 C 1.32525 * 121.61693 * 0.53112 * 4 3 2 6 6 N 1.38841 * 119.70898 * 179.74916 * 5 4 3 7 7 C 1.46493 * 120.00377 * 263.80644 * 6 5 4 8 8 C 1.36915 * 119.99897 * 83.80463 * 6 5 4 9 9 H 1.08004 * 119.99801 * 8.85194 * 8 6 5 10 10 C 1.38812 * 120.00112 * 189.12810 * 8 6 5 11 11 N 1.31565 * 120.00081 * 352.71129 * 10 8 6 12 12 Si 1.86804 * 120.00147 * 172.70491 * 10 8 6 13 13 H 1.48506 * 109.46941 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.46913 * 120.00036 * 12 10 8 15 15 H 1.48495 * 109.47456 * 240.00191 * 12 10 8 16 16 C 1.39179 * 120.57773 * 359.47418 * 5 4 3 17 17 C 1.50702 * 120.45341 * 180.23871 * 16 5 4 18 18 N 1.46901 * 109.47358 * 79.88029 * 17 16 5 19 19 C 1.38353 * 119.09624 * 0.25181 * 16 5 4 20 20 H 1.09000 * 109.46822 * 270.02111 * 1 2 3 21 21 H 1.09001 * 109.47084 * 30.01814 * 1 2 3 22 22 H 1.09001 * 109.47444 * 150.01890 * 1 2 3 23 23 H 1.08004 * 119.56770 * 359.97438 * 3 2 1 24 24 H 1.09002 * 109.47122 * 236.93316 * 7 6 5 25 25 H 1.08999 * 109.46955 * 356.93143 * 7 6 5 26 26 H 1.09001 * 109.47640 * 116.92602 * 7 6 5 27 27 H 0.96999 * 120.00152 * 180.02562 * 11 10 8 28 28 H 1.09002 * 109.47350 * 199.88742 * 17 16 5 29 29 H 1.09000 * 109.46840 * 319.88134 * 17 16 5 30 30 H 1.00900 * 110.99553 * 185.10123 * 18 17 16 31 31 H 1.00898 * 111.00032 * 309.05767 * 18 17 16 32 32 H 1.07999 * 120.75041 * 179.97438 * 19 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2048 1.1925 0.0000 4 7 3.5234 1.2048 0.0055 5 6 4.2286 0.0828 0.0008 6 7 5.6158 0.1420 0.0016 7 6 6.3540 0.0421 -1.2598 8 6 6.2938 0.2937 1.1814 9 1 5.7653 0.2242 2.1207 10 6 7.6593 0.5426 1.1701 11 7 8.3281 0.4908 0.0383 12 14 8.5475 0.9513 2.7618 13 1 7.5768 0.9460 3.8857 14 1 9.6023 -0.0630 3.0146 15 1 9.1694 2.2952 2.6507 16 6 3.5909 -1.1543 0.0007 17 6 4.3957 -2.4285 0.0007 18 7 4.8629 -2.7126 1.3642 19 6 2.2081 -1.1984 0.0004 20 1 -0.3633 0.0004 1.0277 21 1 -0.3633 0.8898 -0.5141 22 1 -0.3634 -0.8901 -0.5135 23 1 1.6631 2.1269 -0.0004 24 1 7.0573 -0.7889 -1.2044 25 1 5.6541 -0.1283 -2.0778 26 1 6.8998 0.9690 -1.4358 27 1 9.2824 0.6643 0.0304 28 1 3.7727 -3.2518 -0.3489 29 1 5.2542 -2.3160 -0.6614 30 1 5.4735 -3.5158 1.3771 31 1 5.3173 -1.9064 1.7661 32 1 1.6858 -2.1437 -0.0001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166798884.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:24 Heat of formation + Delta-G solvation = 62.886976 kcal Electronic energy + Delta-G solvation = -15270.248950 eV Core-core repulsion = 12845.633914 eV Total energy + Delta-G solvation = -2424.615036 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.69695 -35.89160 -34.24191 -32.74355 -31.00990 -30.08220 -26.48418 -26.06693 -24.58210 -23.21108 -21.42289 -20.00560 -17.33964 -16.23051 -16.07581 -15.19860 -14.45403 -14.17660 -13.62623 -13.43026 -13.33537 -13.01020 -12.55007 -12.37584 -11.98766 -11.85741 -11.61783 -11.32788 -10.94924 -10.84034 -10.54332 -10.19834 -9.98522 -9.03188 -8.90618 -8.57987 -8.13965 -7.81882 -7.21079 -5.85348 -3.31225 1.78023 1.98378 3.31495 3.39451 3.41801 4.30263 4.46788 4.88668 5.15876 5.27436 5.31976 5.46504 5.51783 5.58121 5.78009 5.85196 5.87612 6.05481 6.14945 6.31313 6.48321 6.63829 6.78929 6.91842 7.24878 7.45697 7.63959 7.76644 7.77199 8.14542 8.23746 8.87807 9.09345 9.76121 10.10185 11.13819 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034324 B = 0.009232 C = 0.008693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.562411 B = 3032.149401 C = 3220.216285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.179 4.179 3 C 0.103 3.897 4 N -0.500 5.500 5 C 0.406 3.594 6 N -0.555 5.555 7 C 0.175 3.825 8 C -0.251 4.251 9 H 0.078 0.922 10 C 0.009 3.991 11 N -0.905 5.905 12 Si 0.911 3.089 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.287 1.287 16 C -0.145 4.145 17 C 0.122 3.878 18 N -0.848 5.848 19 C -0.061 4.061 20 H 0.063 0.937 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.140 0.860 24 H 0.049 0.951 25 H -0.007 1.007 26 H 0.054 0.946 27 H 0.254 0.746 28 H 0.060 0.940 29 H 0.043 0.957 30 H 0.331 0.669 31 H 0.360 0.640 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.068 -4.022 -1.209 10.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.181 4.181 3 C -0.056 4.056 4 N -0.212 5.212 5 C 0.177 3.823 6 N -0.276 5.276 7 C 0.032 3.968 8 C -0.379 4.379 9 H 0.096 0.904 10 C -0.189 4.189 11 N -0.550 5.550 12 Si 0.740 3.260 13 H -0.201 1.201 14 H -0.215 1.215 15 H -0.213 1.213 16 C -0.151 4.151 17 C -0.009 4.009 18 N -0.380 5.380 19 C -0.088 4.088 20 H 0.082 0.918 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.157 0.843 24 H 0.068 0.932 25 H 0.011 0.989 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.142 0.858 31 H 0.177 0.823 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.103 -3.296 -1.073 10.681 hybrid contribution 1.038 -0.145 0.424 1.130 sum -9.065 -3.441 -0.649 9.718 Atomic orbital electron populations 1.20564 0.91202 1.02065 1.01686 1.20707 0.96678 0.94397 1.06358 1.22404 0.90009 0.96603 0.96605 1.67989 1.07366 1.33511 1.12349 1.18379 0.87396 0.86748 0.89774 1.41474 0.96502 1.83862 1.05714 1.21130 0.91679 1.02334 0.81678 1.19212 0.90442 1.43884 0.84361 0.90445 1.24985 0.96709 0.99732 0.97483 1.70206 1.07721 1.53012 1.24092 0.86083 0.79464 0.78065 0.82388 1.20132 1.21510 1.21310 1.21211 0.93911 0.96623 1.03391 1.20307 0.96921 0.92556 0.91093 1.59062 1.47710 1.11373 1.19817 1.21145 0.93116 0.97376 0.97170 0.91833 0.91952 0.92147 0.84306 0.93248 0.98865 0.92786 0.93489 0.92168 0.93901 0.85803 0.82321 0.86003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 10.03 36.01 0.36 -0.77 16 2 C -0.18 -2.87 5.90 -104.43 -0.62 -3.49 16 3 C 0.10 1.90 10.85 -17.56 -0.19 1.71 16 4 N -0.50 -11.47 10.40 -12.43 -0.13 -11.60 16 5 C 0.41 9.48 5.89 -155.05 -0.91 8.57 16 6 N -0.55 -14.16 2.32 -122.44 -0.28 -14.45 16 7 C 0.17 4.40 8.08 59.84 0.48 4.88 16 8 C -0.25 -6.78 8.12 -15.07 -0.12 -6.90 16 9 H 0.08 2.11 7.57 -52.48 -0.40 1.71 16 10 C 0.01 0.25 5.45 -17.45 -0.10 0.15 16 11 N -0.91 -25.24 9.49 55.49 0.53 -24.71 16 12 Si 0.91 21.51 29.56 -169.99 -5.02 16.49 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 C -0.14 -2.91 5.39 -104.23 -0.56 -3.47 16 17 C 0.12 2.27 6.58 -4.97 -0.03 2.24 16 18 N -0.85 -15.78 9.65 -11.41 -0.11 -15.89 16 19 C -0.06 -1.05 9.49 -39.32 -0.37 -1.42 16 20 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 22 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 23 H 0.14 2.11 8.06 -52.48 -0.42 1.69 16 24 H 0.05 1.28 7.22 -51.93 -0.37 0.91 16 25 H -0.01 -0.17 7.90 -51.93 -0.41 -0.58 16 26 H 0.05 1.48 6.89 -51.93 -0.36 1.12 16 27 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 28 H 0.06 0.96 8.03 -51.93 -0.42 0.54 16 29 H 0.04 0.86 7.02 -51.93 -0.36 0.50 16 30 H 0.33 5.39 9.08 -39.29 -0.36 5.04 16 31 H 0.36 7.69 6.79 -39.29 -0.27 7.42 16 32 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 267.78 15.07 4.04 4.04 Total: -1.00 -29.42 267.78 -7.23 -36.65 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -4.19 Total: 7.99 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -2.06 Total: 1.49 kcal Atomic # 7 Polarization: -66.65 SS G_CDS: 0.00 Total: -66.65 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.42 -7.23 -36.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166798884.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.538 kcal (2) G-P(sol) polarization free energy of solvation -29.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds