Wall clock time and date at job start Sun Mar 29 2020 22:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38164 * 120.33227 * 2 1 4 4 N 1.31870 * 120.86543 * 179.72115 * 3 2 1 5 5 C 1.32525 * 121.61693 * 0.53112 * 4 3 2 6 6 N 1.38841 * 119.70898 * 179.74916 * 5 4 3 7 7 C 1.46493 * 120.00377 * 263.80644 * 6 5 4 8 8 C 1.36915 * 119.99897 * 83.80463 * 6 5 4 9 9 H 1.08004 * 119.99801 * 8.85194 * 8 6 5 10 10 C 1.38812 * 120.00112 * 189.12810 * 8 6 5 11 11 N 1.31565 * 120.00081 * 352.71129 * 10 8 6 12 12 Si 1.86804 * 120.00147 * 172.70491 * 10 8 6 13 13 H 1.48506 * 109.46941 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.46913 * 120.00036 * 12 10 8 15 15 H 1.48495 * 109.47456 * 240.00191 * 12 10 8 16 16 C 1.39179 * 120.57773 * 359.47418 * 5 4 3 17 17 C 1.50702 * 120.45341 * 180.23871 * 16 5 4 18 18 N 1.46901 * 109.47358 * 79.88029 * 17 16 5 19 19 C 1.38353 * 119.09624 * 0.25181 * 16 5 4 20 20 H 1.09000 * 109.46822 * 270.02111 * 1 2 3 21 21 H 1.09001 * 109.47084 * 30.01814 * 1 2 3 22 22 H 1.09001 * 109.47444 * 150.01890 * 1 2 3 23 23 H 1.08004 * 119.56770 * 359.97438 * 3 2 1 24 24 H 1.09002 * 109.47122 * 236.93316 * 7 6 5 25 25 H 1.08999 * 109.46955 * 356.93143 * 7 6 5 26 26 H 1.09001 * 109.47640 * 116.92602 * 7 6 5 27 27 H 0.96999 * 120.00152 * 180.02562 * 11 10 8 28 28 H 1.09002 * 109.47350 * 199.88742 * 17 16 5 29 29 H 1.09000 * 109.46840 * 319.88134 * 17 16 5 30 30 H 1.00900 * 110.99553 * 185.10123 * 18 17 16 31 31 H 1.00898 * 111.00032 * 309.05767 * 18 17 16 32 32 H 1.07999 * 120.75041 * 179.97438 * 19 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2048 1.1925 0.0000 4 7 3.5234 1.2048 0.0055 5 6 4.2286 0.0828 0.0008 6 7 5.6158 0.1420 0.0016 7 6 6.3540 0.0421 -1.2598 8 6 6.2938 0.2937 1.1814 9 1 5.7653 0.2242 2.1207 10 6 7.6593 0.5426 1.1701 11 7 8.3281 0.4908 0.0383 12 14 8.5475 0.9513 2.7618 13 1 7.5768 0.9460 3.8857 14 1 9.6023 -0.0630 3.0146 15 1 9.1694 2.2952 2.6507 16 6 3.5909 -1.1543 0.0007 17 6 4.3957 -2.4285 0.0007 18 7 4.8629 -2.7126 1.3642 19 6 2.2081 -1.1984 0.0004 20 1 -0.3633 0.0004 1.0277 21 1 -0.3633 0.8898 -0.5141 22 1 -0.3634 -0.8901 -0.5135 23 1 1.6631 2.1269 -0.0004 24 1 7.0573 -0.7889 -1.2044 25 1 5.6541 -0.1283 -2.0778 26 1 6.8998 0.9690 -1.4358 27 1 9.2824 0.6643 0.0304 28 1 3.7727 -3.2518 -0.3489 29 1 5.2542 -2.3160 -0.6614 30 1 5.4735 -3.5158 1.3771 31 1 5.3173 -1.9064 1.7661 32 1 1.6858 -2.1437 -0.0001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166798884.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:24 Heat of formation + Delta-G solvation = 43.140248 kcal Electronic energy + Delta-G solvation = -15271.105232 eV Core-core repulsion = 12845.633914 eV Total energy + Delta-G solvation = -2425.471318 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.22076 -37.64026 -35.78433 -34.28961 -32.78278 -31.57037 -28.29029 -27.67587 -26.04821 -24.87492 -23.07282 -21.47358 -19.23231 -17.91902 -17.70742 -16.71655 -16.21149 -15.71387 -15.30665 -14.88568 -14.75450 -14.53876 -14.11857 -13.80021 -13.41624 -13.29207 -13.09304 -12.89791 -12.74952 -12.61733 -12.28200 -12.10187 -11.95022 -10.84083 -10.48758 -10.27456 -9.63141 -9.33674 -9.11872 -7.88802 -5.37097 0.30387 0.54283 1.42613 1.45570 1.55159 2.40241 2.95012 3.14594 3.34510 3.82303 3.96836 4.05618 4.21290 4.29465 4.41152 4.54310 4.64056 4.74285 4.86221 4.95543 5.08902 5.24855 5.32437 5.46018 5.49558 5.51555 5.68265 5.89867 6.23123 6.26041 6.63285 7.01894 7.35261 7.82458 8.15281 9.10211 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034324 B = 0.009232 C = 0.008693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.562411 B = 3032.149401 C = 3220.216285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.155 4.155 3 C 0.088 3.912 4 N -0.542 5.542 5 C 0.363 3.637 6 N -0.566 5.566 7 C 0.197 3.803 8 C -0.251 4.251 9 H 0.069 0.931 10 C -0.042 4.042 11 N -0.933 5.933 12 Si 0.972 3.028 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.293 1.293 16 C -0.152 4.152 17 C 0.125 3.875 18 N -0.845 5.845 19 C -0.061 4.061 20 H 0.079 0.921 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.168 0.832 24 H 0.033 0.967 25 H 0.007 0.993 26 H 0.022 0.978 27 H 0.251 0.749 28 H 0.093 0.907 29 H 0.019 0.981 30 H 0.343 0.657 31 H 0.344 0.656 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.899 -4.879 -0.678 13.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.158 4.158 3 C -0.071 4.071 4 N -0.254 5.254 5 C 0.136 3.864 6 N -0.288 5.288 7 C 0.053 3.947 8 C -0.379 4.379 9 H 0.087 0.913 10 C -0.236 4.236 11 N -0.580 5.580 12 Si 0.800 3.200 13 H -0.196 1.196 14 H -0.210 1.210 15 H -0.219 1.219 16 C -0.157 4.157 17 C -0.006 4.006 18 N -0.375 5.375 19 C -0.088 4.088 20 H 0.097 0.903 21 H 0.099 0.901 22 H 0.100 0.900 23 H 0.185 0.815 24 H 0.051 0.949 25 H 0.025 0.975 26 H 0.040 0.960 27 H 0.061 0.939 28 H 0.111 0.889 29 H 0.037 0.963 30 H 0.155 0.845 31 H 0.158 0.842 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -12.987 -4.178 -0.541 13.653 hybrid contribution 1.667 0.106 0.233 1.687 sum -11.320 -4.072 -0.307 12.034 Atomic orbital electron populations 1.20685 0.87216 1.04122 1.03244 1.21234 0.99315 0.93038 1.02164 1.22962 0.88719 0.99000 0.96428 1.67782 1.09795 1.34177 1.13673 1.18571 0.86517 0.88033 0.93259 1.41418 0.97898 1.84569 1.04909 1.20721 0.91438 0.99901 0.82638 1.19263 0.90731 1.43110 0.84803 0.91333 1.25661 0.97386 1.00347 1.00254 1.70358 1.07544 1.54506 1.25605 0.85131 0.78315 0.77286 0.79259 1.19590 1.20973 1.21941 1.21325 0.95489 0.95689 1.03240 1.20349 0.96504 0.93234 0.90500 1.59085 1.47691 1.10974 1.19759 1.21582 0.91892 0.99447 0.95867 0.90265 0.90140 0.90007 0.81524 0.94881 0.97459 0.95987 0.93943 0.88900 0.96318 0.84523 0.84219 0.82383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.68 10.03 71.24 0.71 -0.96 16 2 C -0.16 -4.40 5.90 -19.74 -0.12 -4.52 16 3 C 0.09 3.03 10.85 84.67 0.92 3.95 16 4 N -0.54 -24.79 10.40 -193.23 -2.01 -26.80 16 5 C 0.36 17.06 5.89 133.09 0.78 17.84 16 6 N -0.57 -29.80 2.32 -541.28 -1.26 -31.05 16 7 C 0.20 10.34 8.08 127.77 1.03 11.37 16 8 C -0.25 -13.92 8.12 84.04 0.68 -13.24 16 9 H 0.07 3.84 7.57 -2.91 -0.02 3.82 16 10 C -0.04 -2.31 5.45 84.87 0.46 -1.85 16 11 N -0.93 -54.03 9.49 21.65 0.21 -53.82 16 12 Si 0.97 45.29 29.56 68.60 2.03 47.32 16 13 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 14 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 15 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 16 C -0.15 -5.88 5.39 -19.61 -0.11 -5.99 16 17 C 0.13 4.50 6.58 85.56 0.56 5.06 16 18 N -0.84 -30.76 9.65 -190.00 -1.83 -32.59 16 19 C -0.06 -1.88 9.49 22.44 0.21 -1.66 16 20 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 21 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 22 H 0.08 1.16 8.09 -2.39 -0.02 1.14 16 23 H 0.17 4.60 8.06 -2.91 -0.02 4.58 16 24 H 0.03 1.80 7.22 -2.39 -0.02 1.78 16 25 H 0.01 0.33 7.90 -2.39 -0.02 0.31 16 26 H 0.02 1.26 6.89 -2.39 -0.02 1.24 16 27 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 28 H 0.09 2.69 8.03 -2.39 -0.02 2.67 16 29 H 0.02 0.76 7.02 -2.39 -0.02 0.74 16 30 H 0.34 10.89 9.08 -89.69 -0.81 10.08 16 31 H 0.34 14.79 6.79 -89.70 -0.61 14.18 16 32 H 0.16 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -65.81 267.78 1.99 -63.82 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: -0.29 Total: 23.12 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 5.15 Total: 10.01 kcal Atomic # 7 Polarization: -139.37 SS G_CDS: -4.89 Total: -144.26 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -65.81 1.99 -63.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166798884.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.960 kcal (2) G-P(sol) polarization free energy of solvation -65.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds