Wall clock time and date at job start Sun Mar 29 2020 22:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47206 * 2 1 4 4 C 1.50700 * 109.47073 * 120.00342 * 2 1 3 5 5 C 1.38172 * 120.83923 * 295.32726 * 4 2 1 6 6 N 1.32528 * 119.19672 * 180.02562 * 5 4 2 7 7 C 1.31827 * 121.02554 * 359.97438 * 6 5 4 8 8 N 1.31702 * 121.84285 * 0.02562 * 7 6 5 9 9 C 1.33065 * 120.68937 * 359.97438 * 8 7 6 10 10 N 1.38522 * 120.53834 * 180.02562 * 9 8 7 11 11 C 1.46504 * 119.99719 * 94.68322 * 10 9 8 12 12 C 1.36932 * 120.00384 * 274.68823 * 10 9 8 13 13 H 1.07998 * 119.99993 * 6.78180 * 12 10 9 14 14 C 1.38849 * 120.00197 * 186.78647 * 12 10 9 15 15 N 1.31531 * 119.99955 * 6.89765 * 14 12 10 16 16 Si 1.86801 * 119.99940 * 186.90002 * 14 12 10 17 17 H 1.48498 * 109.47132 * 59.99893 * 16 14 12 18 18 H 1.48501 * 109.47000 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47223 * 299.99681 * 16 14 12 20 20 H 1.08998 * 109.47259 * 59.99664 * 1 2 3 21 21 H 1.08997 * 109.47336 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46993 * 299.99559 * 1 2 3 23 23 H 1.08998 * 109.46993 * 240.00441 * 2 1 3 24 24 H 1.08998 * 109.47498 * 180.02562 * 3 2 1 25 25 H 1.08998 * 109.47286 * 300.00319 * 3 2 1 26 26 H 1.09008 * 109.46893 * 60.00234 * 3 2 1 27 27 H 1.08004 * 120.40538 * 0.02562 * 5 4 2 28 28 H 1.07997 * 119.07530 * 179.97438 * 7 6 5 29 29 H 1.08999 * 109.47273 * 354.21627 * 11 10 9 30 30 H 1.09000 * 109.46725 * 114.21609 * 11 10 9 31 31 H 1.08998 * 109.47450 * 234.21499 * 11 10 9 32 32 H 0.97004 * 119.99943 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.7899 -0.2004 2.4915 6 7 2.2472 -0.8517 3.5512 7 6 2.9261 -1.9739 3.4182 8 7 3.1804 -2.4963 2.2363 9 6 2.7546 -1.9012 1.1249 10 7 3.0234 -2.4537 -0.1166 11 6 2.0376 -3.3267 -0.7588 12 6 4.2105 -2.1840 -0.7436 13 1 4.9812 -1.6321 -0.2263 14 6 4.4232 -2.6201 -2.0446 15 7 3.4402 -3.1717 -2.7224 16 14 6.1057 -2.4236 -2.8322 17 1 7.1150 -3.1660 -2.0353 18 1 6.0713 -2.9648 -4.2146 19 1 6.4682 -0.9840 -2.8726 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9563 -0.8899 26 1 1.6766 1.9563 0.8901 27 1 1.2345 0.7180 2.6121 28 1 3.2845 -2.4784 4.3033 29 1 1.2098 -3.5063 -0.0727 30 1 1.6625 -2.8476 -1.6631 31 1 2.5069 -4.2757 -1.0182 32 1 3.5889 -3.4767 -3.6311 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166799127.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:22 Heat of formation + Delta-G solvation = 70.745674 kcal Electronic energy + Delta-G solvation = -15437.699027 eV Core-core repulsion = 13013.424769 eV Total energy + Delta-G solvation = -2424.274257 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.37118 -36.19626 -35.25304 -32.62707 -30.97144 -29.25484 -26.79534 -26.13747 -24.37307 -23.99378 -21.37320 -19.94126 -17.56867 -17.06195 -16.22681 -14.75866 -14.63474 -14.16915 -13.72057 -13.51071 -13.20160 -12.93726 -12.66476 -12.11527 -11.89332 -11.76747 -11.30508 -10.86321 -10.82201 -10.69658 -10.37344 -10.31929 -10.04316 -9.90429 -9.74159 -8.82142 -8.52494 -8.48310 -7.30779 -5.84756 -3.35669 1.62352 1.81287 3.32322 3.37214 3.39058 4.24679 4.47135 4.69142 4.77254 5.12505 5.23851 5.37602 5.41580 5.63573 5.79463 5.84304 5.93531 6.08983 6.14129 6.27888 6.37845 6.45205 6.56995 6.65937 6.95322 7.07299 7.36536 7.61119 7.72012 7.76454 8.19806 8.84364 9.03898 9.69118 10.00904 11.14279 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027865 B = 0.010701 C = 0.009492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.601593 B = 2616.026415 C = 2949.019408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.049 4.049 3 C -0.137 4.137 4 C -0.184 4.184 5 C 0.135 3.865 6 N -0.546 5.546 7 C 0.282 3.718 8 N -0.539 5.539 9 C 0.456 3.544 10 N -0.552 5.552 11 C 0.174 3.826 12 C -0.256 4.256 13 H 0.074 0.926 14 C 0.011 3.989 15 N -0.909 5.909 16 Si 0.916 3.084 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.281 1.281 20 H 0.056 0.944 21 H 0.052 0.948 22 H 0.047 0.953 23 H 0.109 0.891 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.152 0.848 28 H 0.181 0.819 29 H -0.006 1.006 30 H 0.065 0.935 31 H 0.045 0.955 32 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.797 5.831 4.912 9.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.068 4.068 3 C -0.194 4.194 4 C -0.193 4.193 5 C -0.029 4.029 6 N -0.261 5.261 7 C -0.008 4.008 8 N -0.257 5.257 9 C 0.218 3.782 10 N -0.273 5.273 11 C 0.031 3.969 12 C -0.383 4.383 13 H 0.092 0.908 14 C -0.187 4.187 15 N -0.555 5.555 16 Si 0.745 3.255 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.207 1.207 20 H 0.075 0.925 21 H 0.071 0.929 22 H 0.066 0.934 23 H 0.127 0.873 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.170 0.830 28 H 0.198 0.802 29 H 0.012 0.988 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.457 5.246 5.469 8.792 hybrid contribution 0.712 0.326 -1.036 1.298 sum -3.745 5.572 4.434 8.046 Atomic orbital electron populations 1.21806 0.95123 1.01557 1.00982 1.19950 0.94673 0.95372 0.96849 1.21789 1.01432 0.95366 1.00832 1.22237 1.02664 0.97521 0.96838 1.22797 0.94626 0.97970 0.87522 1.68278 1.13181 1.10152 1.34527 1.24602 0.91970 0.89356 0.94849 1.68689 1.22352 1.35231 0.99432 1.18595 0.85215 0.87185 0.87172 1.41368 1.19421 1.54563 1.11955 1.21166 0.87681 0.94130 0.93936 1.19090 0.91521 1.32503 0.95199 0.90797 1.24840 0.98192 0.99471 0.96220 1.70125 1.29686 1.44769 1.10891 0.86148 0.83073 0.77987 0.78247 1.20833 1.21286 1.20748 0.92515 0.92890 0.93414 0.87332 0.92587 0.92600 0.93464 0.83045 0.80188 0.98769 0.91699 0.93642 0.93319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.06 37.16 0.34 -1.67 16 2 C -0.05 -0.85 3.08 -91.78 -0.28 -1.13 16 3 C -0.14 -2.05 8.96 37.15 0.33 -1.72 16 4 C -0.18 -3.55 4.82 -104.11 -0.50 -4.05 16 5 C 0.14 2.32 10.06 -17.28 -0.17 2.15 16 6 N -0.55 -9.85 10.43 -14.66 -0.15 -10.00 16 7 C 0.28 5.24 12.28 -92.20 -1.13 4.11 16 8 N -0.54 -12.00 10.47 -13.79 -0.14 -12.15 16 9 C 0.46 10.43 5.99 -154.72 -0.93 9.50 16 10 N -0.55 -13.99 1.90 -122.22 -0.23 -14.22 16 11 C 0.17 4.27 8.79 59.85 0.53 4.80 16 12 C -0.26 -6.94 9.75 -15.05 -0.15 -7.09 16 13 H 0.07 2.03 7.84 -52.49 -0.41 1.62 16 14 C 0.01 0.29 5.40 -17.45 -0.09 0.19 16 15 N -0.91 -24.93 9.60 55.49 0.53 -24.40 16 16 Si 0.92 21.43 29.56 -169.99 -5.02 16.41 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 20 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 21 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.05 0.60 7.77 -51.93 -0.40 0.20 16 23 H 0.11 2.32 6.87 -51.93 -0.36 1.96 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.60 7.23 -51.92 -0.38 0.23 16 27 H 0.15 2.11 7.27 -52.48 -0.38 1.73 16 28 H 0.18 2.66 8.06 -52.49 -0.42 2.24 16 29 H -0.01 -0.14 7.90 -51.93 -0.41 -0.56 16 30 H 0.06 1.65 6.81 -51.93 -0.35 1.30 16 31 H 0.04 1.20 7.34 -51.93 -0.38 0.82 16 32 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 269.44 15.07 4.06 4.06 Total: -1.00 -28.92 269.44 -7.35 -36.26 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -4.32 Total: -1.04 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -2.06 Total: 5.08 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: 0.00 Total: -60.77 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.92 -7.35 -36.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799127.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.010 kcal (2) G-P(sol) polarization free energy of solvation -28.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds