Wall clock time and date at job start Sun Mar 29 2020 22:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47206 * 2 1 4 4 C 1.50700 * 109.47073 * 120.00342 * 2 1 3 5 5 C 1.38172 * 120.83923 * 295.32726 * 4 2 1 6 6 N 1.32528 * 119.19672 * 180.02562 * 5 4 2 7 7 C 1.31827 * 121.02554 * 359.97438 * 6 5 4 8 8 N 1.31702 * 121.84285 * 0.02562 * 7 6 5 9 9 C 1.33065 * 120.68937 * 359.97438 * 8 7 6 10 10 N 1.38522 * 120.53834 * 180.02562 * 9 8 7 11 11 C 1.46504 * 119.99719 * 94.68322 * 10 9 8 12 12 C 1.36932 * 120.00384 * 274.68823 * 10 9 8 13 13 H 1.07998 * 119.99993 * 6.78180 * 12 10 9 14 14 C 1.38849 * 120.00197 * 186.78647 * 12 10 9 15 15 N 1.31531 * 119.99955 * 6.89765 * 14 12 10 16 16 Si 1.86801 * 119.99940 * 186.90002 * 14 12 10 17 17 H 1.48498 * 109.47132 * 59.99893 * 16 14 12 18 18 H 1.48501 * 109.47000 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47223 * 299.99681 * 16 14 12 20 20 H 1.08998 * 109.47259 * 59.99664 * 1 2 3 21 21 H 1.08997 * 109.47336 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46993 * 299.99559 * 1 2 3 23 23 H 1.08998 * 109.46993 * 240.00441 * 2 1 3 24 24 H 1.08998 * 109.47498 * 180.02562 * 3 2 1 25 25 H 1.08998 * 109.47286 * 300.00319 * 3 2 1 26 26 H 1.09008 * 109.46893 * 60.00234 * 3 2 1 27 27 H 1.08004 * 120.40538 * 0.02562 * 5 4 2 28 28 H 1.07997 * 119.07530 * 179.97438 * 7 6 5 29 29 H 1.08999 * 109.47273 * 354.21627 * 11 10 9 30 30 H 1.09000 * 109.46725 * 114.21609 * 11 10 9 31 31 H 1.08998 * 109.47450 * 234.21499 * 11 10 9 32 32 H 0.97004 * 119.99943 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.7899 -0.2004 2.4915 6 7 2.2472 -0.8517 3.5512 7 6 2.9261 -1.9739 3.4182 8 7 3.1804 -2.4963 2.2363 9 6 2.7546 -1.9012 1.1249 10 7 3.0234 -2.4537 -0.1166 11 6 2.0376 -3.3267 -0.7588 12 6 4.2105 -2.1840 -0.7436 13 1 4.9812 -1.6321 -0.2263 14 6 4.4232 -2.6201 -2.0446 15 7 3.4402 -3.1717 -2.7224 16 14 6.1057 -2.4236 -2.8322 17 1 7.1150 -3.1660 -2.0353 18 1 6.0713 -2.9648 -4.2146 19 1 6.4682 -0.9840 -2.8726 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9563 -0.8899 26 1 1.6766 1.9563 0.8901 27 1 1.2345 0.7180 2.6121 28 1 3.2845 -2.4784 4.3033 29 1 1.2098 -3.5063 -0.0727 30 1 1.6625 -2.8476 -1.6631 31 1 2.5069 -4.2757 -1.0182 32 1 3.5889 -3.4767 -3.6311 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166799127.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:21 Heat of formation + Delta-G solvation = 55.331919 kcal Electronic energy + Delta-G solvation = -15438.367417 eV Core-core repulsion = 13013.424769 eV Total energy + Delta-G solvation = -2424.942648 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.90545 -37.93954 -36.71192 -34.36341 -32.75517 -30.81983 -28.24763 -27.87955 -26.13397 -25.45434 -23.13326 -21.30335 -19.44012 -18.59043 -18.08709 -16.55053 -15.97700 -15.81271 -15.41140 -14.91375 -14.75828 -14.67473 -13.99534 -13.89572 -13.25285 -13.08534 -12.97377 -12.77183 -12.64863 -12.22512 -12.08875 -12.05975 -11.68409 -11.38992 -11.34356 -10.81435 -10.11779 -9.99017 -9.26218 -7.89373 -5.42899 0.12326 0.26764 1.43449 1.46589 1.53038 2.37355 2.94463 3.01050 3.23714 3.38365 3.75189 3.91081 3.99997 4.29473 4.38273 4.47917 4.59385 4.78258 4.85320 4.89433 5.01326 5.09525 5.26372 5.27812 5.43143 5.46569 5.55852 5.65389 5.68513 6.17671 6.25122 6.98627 7.31508 7.72912 8.03415 9.08408 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027865 B = 0.010701 C = 0.009492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.601593 B = 2616.026415 C = 2949.019408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.047 4.047 3 C -0.131 4.131 4 C -0.185 4.185 5 C 0.149 3.851 6 N -0.540 5.540 7 C 0.281 3.719 8 N -0.573 5.573 9 C 0.417 3.583 10 N -0.565 5.565 11 C 0.195 3.805 12 C -0.267 4.267 13 H 0.062 0.938 14 C -0.034 4.034 15 N -0.930 5.930 16 Si 0.976 3.024 17 H -0.284 1.284 18 H -0.284 1.284 19 H -0.273 1.273 20 H 0.071 0.929 21 H 0.035 0.965 22 H 0.076 0.924 23 H 0.061 0.939 24 H 0.033 0.967 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.196 0.804 28 H 0.216 0.784 29 H 0.008 0.992 30 H 0.050 0.950 31 H 0.015 0.985 32 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.414 7.688 6.213 11.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.068 4.068 3 C -0.188 4.188 4 C -0.193 4.193 5 C -0.016 4.016 6 N -0.254 5.254 7 C -0.008 4.008 8 N -0.291 5.291 9 C 0.182 3.818 10 N -0.287 5.287 11 C 0.052 3.948 12 C -0.395 4.395 13 H 0.080 0.920 14 C -0.230 4.230 15 N -0.576 5.576 16 Si 0.803 3.197 17 H -0.210 1.210 18 H -0.209 1.209 19 H -0.199 1.199 20 H 0.090 0.910 21 H 0.054 0.946 22 H 0.095 0.905 23 H 0.080 0.920 24 H 0.052 0.948 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.213 0.787 28 H 0.232 0.768 29 H 0.027 0.973 30 H 0.068 0.932 31 H 0.034 0.966 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.079 7.113 6.800 11.074 hybrid contribution 0.865 -0.207 -1.315 1.588 sum -4.214 6.906 5.485 9.774 Atomic orbital electron populations 1.21753 0.92617 1.01188 1.03144 1.19908 0.96661 0.96153 0.94028 1.21751 0.99990 0.93899 1.03142 1.22342 1.01764 0.96520 0.98668 1.23399 0.93433 0.98631 0.86114 1.68415 1.12681 1.09743 1.34546 1.25248 0.91361 0.89545 0.94658 1.68555 1.23452 1.36708 1.00434 1.18883 0.87724 0.88729 0.86468 1.41323 1.18942 1.55141 1.13264 1.20787 0.87709 0.92583 0.93745 1.19171 0.92011 1.32684 0.95667 0.91972 1.25550 1.01317 0.99528 0.96555 1.70269 1.31039 1.45429 1.10860 0.85229 0.79133 0.78133 0.77229 1.21011 1.20944 1.19898 0.91019 0.94554 0.90546 0.92049 0.94810 0.91093 0.90349 0.78713 0.76791 0.97301 0.93201 0.96585 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.47 9.06 71.98 0.65 -2.82 16 2 C -0.05 -1.61 3.08 -11.54 -0.04 -1.64 16 3 C -0.13 -3.59 8.96 71.98 0.65 -2.95 16 4 C -0.19 -6.91 4.82 -19.53 -0.09 -7.00 16 5 C 0.15 4.62 10.06 84.57 0.85 5.47 16 6 N -0.54 -17.75 10.43 -200.29 -2.09 -19.84 16 7 C 0.28 9.88 12.28 180.90 2.22 12.11 16 8 N -0.57 -25.38 10.47 -197.55 -2.07 -27.45 16 9 C 0.42 19.22 5.99 133.16 0.80 20.02 16 10 N -0.57 -29.56 1.90 -540.59 -1.03 -30.59 16 11 C 0.20 10.01 8.79 127.77 1.12 11.13 16 12 C -0.27 -14.99 9.75 84.04 0.82 -14.17 16 13 H 0.06 3.54 7.84 -2.91 -0.02 3.51 16 14 C -0.03 -1.87 5.40 84.88 0.46 -1.41 16 15 N -0.93 -52.62 9.60 21.65 0.21 -52.41 16 16 Si 0.98 44.75 29.56 68.60 2.03 46.78 16 17 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 20 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 21 H 0.04 1.07 8.14 -2.39 -0.02 1.06 16 22 H 0.08 1.60 7.77 -2.39 -0.02 1.58 16 23 H 0.06 2.69 6.87 -2.39 -0.02 2.67 16 24 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.08 1.65 7.23 -2.38 -0.02 1.64 16 27 H 0.20 4.30 7.27 -2.91 -0.02 4.27 16 28 H 0.22 5.76 8.06 -2.91 -0.02 5.74 16 29 H 0.01 0.40 7.90 -2.39 -0.02 0.38 16 30 H 0.05 2.67 6.81 -2.39 -0.02 2.65 16 31 H 0.02 0.87 7.34 -2.39 -0.02 0.86 16 32 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -64.19 269.44 5.59 -58.60 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: 1.10 Total: 6.16 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: 7.44 Total: 18.74 kcal Atomic # 7 Polarization: -125.31 SS G_CDS: -4.98 Total: -130.28 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -64.19 5.59 -58.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799127.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.936 kcal (2) G-P(sol) polarization free energy of solvation -64.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds