Wall clock time and date at job start Sun Mar 29 2020 22:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47597 * 2 1 4 4 C 1.50696 * 109.47451 * 179.97438 * 3 2 1 5 5 C 1.38680 * 120.40322 * 124.99895 * 4 3 2 6 6 C 1.38637 * 118.55639 * 179.73167 * 5 4 3 7 7 N 1.32249 * 119.19575 * 0.24661 * 6 5 4 8 8 C 1.32523 * 120.74225 * 0.02562 * 7 6 5 9 9 N 1.38441 * 119.21364 * 179.97438 * 8 7 6 10 10 C 1.46499 * 119.99759 * 180.02562 * 9 8 7 11 11 C 1.36988 * 119.99973 * 0.02562 * 9 8 7 12 12 H 1.07991 * 120.00372 * 20.92810 * 11 9 8 13 13 C 1.38835 * 119.99440 * 200.93025 * 11 9 8 14 14 N 1.31540 * 120.00447 * 14.05691 * 13 11 9 15 15 Si 1.86800 * 119.99706 * 194.04927 * 13 11 9 16 16 H 1.48499 * 109.46866 * 85.02034 * 15 13 11 17 17 H 1.48496 * 109.47208 * 205.02095 * 15 13 11 18 18 H 1.48502 * 109.47032 * 325.02249 * 15 13 11 19 19 N 1.32218 * 120.40422 * 305.21933 * 4 3 2 20 20 H 1.08995 * 109.47232 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47021 * 300.00254 * 1 2 3 22 22 H 1.09001 * 109.47097 * 59.99802 * 1 2 3 23 23 H 1.08997 * 109.47623 * 239.99394 * 2 1 3 24 24 H 1.09005 * 109.47191 * 119.99698 * 2 1 3 25 25 H 1.08995 * 109.46908 * 59.99578 * 3 2 1 26 26 H 1.09005 * 109.46603 * 300.00058 * 3 2 1 27 27 H 1.08001 * 120.71942 * 0.02562 * 5 4 3 28 28 H 1.08005 * 120.40358 * 180.22906 * 6 5 4 29 29 H 1.09007 * 109.46688 * 94.56288 * 10 9 8 30 30 H 1.08997 * 109.47506 * 214.55726 * 10 9 8 31 31 H 1.08998 * 109.47258 * 334.56168 * 10 9 8 32 32 H 0.96995 * 120.00305 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2493 2.1283 -0.9790 6 6 5.6349 2.1073 -0.9385 7 7 6.2421 1.4339 0.0242 8 6 5.5412 0.7843 0.9424 9 7 6.2094 0.0890 1.9357 10 6 5.4517 -0.6356 2.9590 11 6 7.5790 0.0787 1.9619 12 1 8.1347 0.8505 1.4503 13 6 8.2526 -0.9241 2.6460 14 7 7.6088 -2.0048 3.0307 15 14 10.0733 -0.7388 3.0202 16 1 10.2443 0.0357 4.2757 17 1 10.6850 -2.0824 3.1803 18 1 10.7380 -0.0223 1.9022 19 7 4.2158 0.7849 0.9326 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9563 0.8899 26 1 1.6767 1.9563 -0.8900 27 1 3.7281 2.6710 -1.7537 28 1 6.2116 2.6343 -1.6844 29 1 5.3387 -1.6771 2.6578 30 1 5.9853 -0.5878 3.9082 31 1 4.4674 -0.1812 3.0721 32 1 8.0795 -2.7056 3.5083 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166799682.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:10 Heat of formation + Delta-G solvation = 52.216908 kcal Electronic energy + Delta-G solvation = -14806.642973 eV Core-core repulsion = 12381.565248 eV Total energy + Delta-G solvation = -2425.077725 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.71656 -36.27476 -34.84421 -32.25850 -31.89235 -29.74166 -27.21843 -26.18039 -24.42804 -22.50020 -21.14614 -20.64788 -17.45087 -16.55543 -15.83377 -14.91363 -14.61932 -14.29360 -14.06619 -13.65763 -13.31065 -12.99491 -12.75793 -12.35621 -11.87043 -11.44309 -11.23510 -11.10798 -10.98299 -10.83770 -10.45380 -10.41508 -10.37808 -9.66530 -9.52855 -9.38737 -8.72805 -7.81027 -7.12046 -6.41976 -3.81389 2.29671 2.36510 3.17410 3.18792 3.23572 3.96477 4.51946 4.74453 5.02896 5.19526 5.22937 5.37036 5.47865 5.68751 5.80088 5.98780 6.02154 6.14428 6.18953 6.22802 6.43500 6.50812 6.65186 6.67123 6.87163 6.92868 7.26585 7.39631 7.50186 7.93934 8.37215 8.49698 9.11481 9.31570 9.86046 10.57564 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.040381 B = 0.007476 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.227476 B = 3744.365757 C = 4323.888395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.062 4.062 4 C 0.218 3.782 5 C -0.368 4.368 6 C 0.192 3.808 7 N -0.575 5.575 8 C 0.499 3.501 9 N -0.394 5.394 10 C 0.131 3.869 11 C -0.288 4.288 12 H 0.109 0.891 13 C 0.025 3.975 14 N -0.871 5.871 15 Si 0.935 3.065 16 H -0.276 1.276 17 H -0.283 1.283 18 H -0.267 1.267 19 N -0.590 5.590 20 H 0.051 0.949 21 H 0.052 0.948 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.116 0.884 28 H 0.143 0.857 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.005 4.013 -3.650 9.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.100 4.100 4 C 0.065 3.935 5 C -0.399 4.399 6 C 0.019 3.981 7 N -0.300 5.300 8 C 0.146 3.854 9 N -0.085 5.085 10 C -0.013 4.013 11 C -0.418 4.418 12 H 0.127 0.873 13 C -0.180 4.180 14 N -0.508 5.508 15 Si 0.762 3.238 16 H -0.201 1.201 17 H -0.208 1.208 18 H -0.192 1.192 19 N -0.317 5.317 20 H 0.070 0.930 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.134 0.866 28 H 0.160 0.840 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.232 3.044 -2.443 8.218 hybrid contribution 0.479 0.425 -0.556 0.848 sum -6.753 3.468 -2.999 8.163 Atomic orbital electron populations 1.21784 0.96260 1.01301 1.01362 1.21401 0.94695 0.96185 1.03017 1.20471 0.89602 0.97766 1.02169 1.20948 0.95312 0.88440 0.88769 1.21674 0.96171 1.15335 1.06730 1.22549 0.91720 0.90784 0.93028 1.67876 1.40422 1.15367 1.06299 1.19250 0.84444 0.93805 0.87865 1.42345 1.05352 1.41521 1.19280 1.21429 0.93216 0.96039 0.90615 1.19902 0.79599 1.10177 1.32076 0.87316 1.25472 1.00900 0.94062 0.97574 1.70114 1.37413 1.06156 1.37073 0.85787 0.81264 0.77621 0.79167 1.20148 1.20829 1.19156 1.67518 1.08067 1.27013 1.29056 0.92983 0.92861 0.93100 0.92415 0.90721 0.90659 0.90952 0.86587 0.83960 0.92212 0.91942 0.93630 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.16 0.37 -1.30 16 2 C -0.11 -1.66 5.80 -26.73 -0.16 -1.81 16 3 C -0.06 -0.93 5.65 -27.88 -0.16 -1.08 16 4 C 0.22 4.31 6.21 -82.26 -0.51 3.79 16 5 C -0.37 -6.86 9.80 -39.27 -0.38 -7.25 16 6 C 0.19 3.90 11.30 -17.22 -0.19 3.71 16 7 N -0.58 -14.29 9.21 -13.90 -0.13 -14.42 16 8 C 0.50 12.94 8.13 -322.65 -2.62 10.31 16 9 N -0.39 -10.65 3.11 -124.45 -0.39 -11.04 16 10 C 0.13 3.24 8.74 59.85 0.52 3.76 16 11 C -0.29 -7.96 9.31 -15.03 -0.14 -8.10 16 12 H 0.11 3.04 7.30 -52.49 -0.38 2.66 16 13 C 0.03 0.66 5.08 -17.46 -0.09 0.57 16 14 N -0.87 -23.42 10.65 55.49 0.59 -22.83 16 15 Si 0.94 20.43 29.58 -169.99 -5.03 15.40 16 16 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 17 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 19 N -0.59 -13.77 8.63 -10.12 -0.09 -13.85 16 20 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.07 1.23 7.98 -51.93 -0.41 0.82 16 25 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.07 0.91 7.94 -51.93 -0.41 0.50 16 27 H 0.12 1.77 8.01 -52.49 -0.42 1.35 16 28 H 0.14 2.32 8.06 -52.48 -0.42 1.90 16 29 H 0.06 1.55 7.42 -51.92 -0.39 1.16 16 30 H 0.06 1.56 7.19 -51.93 -0.37 1.18 16 31 H 0.05 1.05 7.19 -51.93 -0.37 0.67 16 32 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 272.53 15.07 4.11 4.11 Total: -1.00 -29.72 272.53 -8.73 -38.45 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -4.43 Total: 1.58 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -3.36 Total: 2.61 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: -0.01 Total: -62.14 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.40 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.72 -8.73 -38.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799682.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.670 kcal (2) G-P(sol) polarization free energy of solvation -29.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds