Wall clock time and date at job start Sun Mar 29 2020 22:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47597 * 2 1 4 4 C 1.50696 * 109.47451 * 179.97438 * 3 2 1 5 5 C 1.38680 * 120.40322 * 124.99895 * 4 3 2 6 6 C 1.38637 * 118.55639 * 179.73167 * 5 4 3 7 7 N 1.32249 * 119.19575 * 0.24661 * 6 5 4 8 8 C 1.32523 * 120.74225 * 0.02562 * 7 6 5 9 9 N 1.38441 * 119.21364 * 179.97438 * 8 7 6 10 10 C 1.46499 * 119.99759 * 180.02562 * 9 8 7 11 11 C 1.36988 * 119.99973 * 0.02562 * 9 8 7 12 12 H 1.07991 * 120.00372 * 20.92810 * 11 9 8 13 13 C 1.38835 * 119.99440 * 200.93025 * 11 9 8 14 14 N 1.31540 * 120.00447 * 14.05691 * 13 11 9 15 15 Si 1.86800 * 119.99706 * 194.04927 * 13 11 9 16 16 H 1.48499 * 109.46866 * 85.02034 * 15 13 11 17 17 H 1.48496 * 109.47208 * 205.02095 * 15 13 11 18 18 H 1.48502 * 109.47032 * 325.02249 * 15 13 11 19 19 N 1.32218 * 120.40422 * 305.21933 * 4 3 2 20 20 H 1.08995 * 109.47232 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47021 * 300.00254 * 1 2 3 22 22 H 1.09001 * 109.47097 * 59.99802 * 1 2 3 23 23 H 1.08997 * 109.47623 * 239.99394 * 2 1 3 24 24 H 1.09005 * 109.47191 * 119.99698 * 2 1 3 25 25 H 1.08995 * 109.46908 * 59.99578 * 3 2 1 26 26 H 1.09005 * 109.46603 * 300.00058 * 3 2 1 27 27 H 1.08001 * 120.71942 * 0.02562 * 5 4 3 28 28 H 1.08005 * 120.40358 * 180.22906 * 6 5 4 29 29 H 1.09007 * 109.46688 * 94.56288 * 10 9 8 30 30 H 1.08997 * 109.47506 * 214.55726 * 10 9 8 31 31 H 1.08998 * 109.47258 * 334.56168 * 10 9 8 32 32 H 0.96995 * 120.00305 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2493 2.1283 -0.9790 6 6 5.6349 2.1073 -0.9385 7 7 6.2421 1.4339 0.0242 8 6 5.5412 0.7843 0.9424 9 7 6.2094 0.0890 1.9357 10 6 5.4517 -0.6356 2.9590 11 6 7.5790 0.0787 1.9619 12 1 8.1347 0.8505 1.4503 13 6 8.2526 -0.9241 2.6460 14 7 7.6088 -2.0048 3.0307 15 14 10.0733 -0.7388 3.0202 16 1 10.2443 0.0357 4.2757 17 1 10.6850 -2.0824 3.1803 18 1 10.7380 -0.0223 1.9022 19 7 4.2158 0.7849 0.9326 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9563 0.8899 26 1 1.6767 1.9563 -0.8900 27 1 3.7281 2.6710 -1.7537 28 1 6.2116 2.6343 -1.6844 29 1 5.3387 -1.6771 2.6578 30 1 5.9853 -0.5878 3.9082 31 1 4.4674 -0.1812 3.0721 32 1 8.0795 -2.7056 3.5083 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166799682.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:09 Heat of formation + Delta-G solvation = 36.725597 kcal Electronic energy + Delta-G solvation = -14807.314727 eV Core-core repulsion = 12381.565248 eV Total energy + Delta-G solvation = -2425.749479 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.46046 -38.06513 -36.22681 -34.09554 -33.49199 -31.44193 -28.82042 -27.80910 -26.30824 -23.96860 -22.88564 -21.96995 -19.30634 -18.33911 -17.63983 -16.56863 -16.04506 -15.91786 -15.68613 -15.19713 -15.06493 -14.43386 -14.28295 -13.82329 -13.28118 -13.11173 -12.95837 -12.65329 -12.50558 -12.23510 -12.10660 -12.06775 -11.60905 -11.37923 -11.31239 -11.09293 -10.55160 -9.55988 -8.97089 -8.33924 -5.84090 0.61331 0.70158 1.40531 1.46578 1.54077 2.18885 2.71472 2.87665 3.41422 3.60469 3.89277 4.17296 4.24521 4.35733 4.51472 4.67752 4.78752 4.80898 4.88736 4.92309 4.97145 5.05349 5.18420 5.24505 5.29657 5.40864 5.44320 5.53747 5.76399 6.09751 6.54773 6.66140 7.21815 7.44205 8.02158 8.66450 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.040381 B = 0.007476 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.227476 B = 3744.365757 C = 4323.888395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C -0.057 4.057 4 C 0.201 3.799 5 C -0.342 4.342 6 C 0.177 3.823 7 N -0.613 5.613 8 C 0.490 3.510 9 N -0.429 5.429 10 C 0.155 3.845 11 C -0.316 4.316 12 H 0.094 0.906 13 C -0.017 4.017 14 N -0.904 5.904 15 Si 1.003 2.997 16 H -0.268 1.268 17 H -0.276 1.276 18 H -0.267 1.267 19 N -0.608 5.608 20 H 0.056 0.944 21 H 0.060 0.940 22 H 0.070 0.930 23 H 0.048 0.952 24 H 0.043 0.957 25 H 0.084 0.916 26 H 0.109 0.891 27 H 0.164 0.836 28 H 0.183 0.817 29 H 0.037 0.963 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.368 5.594 -5.281 12.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.095 4.095 4 C 0.050 3.950 5 C -0.371 4.371 6 C 0.008 3.992 7 N -0.339 5.339 8 C 0.137 3.863 9 N -0.125 5.125 10 C 0.011 3.989 11 C -0.445 4.445 12 H 0.112 0.888 13 C -0.218 4.218 14 N -0.541 5.541 15 Si 0.826 3.174 16 H -0.193 1.193 17 H -0.202 1.202 18 H -0.191 1.191 19 N -0.335 5.335 20 H 0.075 0.925 21 H 0.079 0.921 22 H 0.089 0.911 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.103 0.897 26 H 0.127 0.873 27 H 0.182 0.818 28 H 0.200 0.800 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.657 4.685 -4.152 10.683 hybrid contribution 0.662 0.107 -0.301 0.735 sum -7.995 4.792 -4.453 10.330 Atomic orbital electron populations 1.21721 0.93362 1.02138 1.02704 1.21353 0.97164 0.95508 1.01095 1.20635 0.86052 0.98447 1.04375 1.21939 0.97808 0.87320 0.87914 1.22278 0.95702 1.12790 1.06319 1.23358 0.93257 0.90035 0.92559 1.67895 1.41781 1.16731 1.07514 1.19625 0.85519 0.93121 0.88053 1.42427 1.05343 1.43870 1.20893 1.21097 0.93225 0.94715 0.89861 1.19894 0.80334 1.10622 1.33628 0.88838 1.26309 1.05014 0.93388 0.97104 1.70211 1.38926 1.06800 1.38189 0.84795 0.75985 0.77695 0.78961 1.19314 1.20152 1.19097 1.67612 1.07126 1.28148 1.30623 0.92535 0.92136 0.91076 0.93329 0.93803 0.89724 0.87277 0.81795 0.80009 0.94442 0.93109 0.92712 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.91 71.98 0.71 -2.00 16 2 C -0.11 -3.03 5.80 30.59 0.18 -2.85 16 3 C -0.06 -1.51 5.65 29.85 0.17 -1.34 16 4 C 0.20 7.43 6.21 42.60 0.26 7.70 16 5 C -0.34 -11.39 9.80 22.47 0.22 -11.17 16 6 C 0.18 6.76 11.30 84.73 0.96 7.72 16 7 N -0.61 -30.48 9.21 -197.89 -1.82 -32.31 16 8 C 0.49 25.85 8.13 261.43 2.13 27.98 16 9 N -0.43 -24.19 3.11 -547.63 -1.70 -25.89 16 10 C 0.15 8.07 8.74 127.77 1.12 9.19 16 11 C -0.32 -18.17 9.31 84.03 0.78 -17.39 16 12 H 0.09 5.47 7.30 -2.92 -0.02 5.45 16 13 C -0.02 -0.91 5.08 84.88 0.43 -0.48 16 14 N -0.90 -50.44 10.65 21.65 0.23 -50.21 16 15 Si 1.00 42.93 29.58 68.60 2.03 44.96 16 16 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 17 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 18 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 19 N -0.61 -28.30 8.63 -185.94 -1.60 -29.91 16 20 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 21 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 23 H 0.05 1.36 8.14 -2.39 -0.02 1.35 16 24 H 0.04 1.43 7.98 -2.38 -0.02 1.41 16 25 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.11 2.12 7.94 -2.38 -0.02 2.10 16 27 H 0.16 3.92 8.01 -2.91 -0.02 3.89 16 28 H 0.18 5.27 8.06 -2.91 -0.02 5.25 16 29 H 0.04 2.05 7.42 -2.38 -0.02 2.03 16 30 H 0.05 2.67 7.19 -2.39 -0.02 2.66 16 31 H 0.05 2.63 7.19 -2.39 -0.02 2.62 16 32 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -67.24 272.53 5.18 -62.06 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 1.10 Total: 13.96 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 6.96 Total: 17.34 kcal Atomic # 7 Polarization: -133.42 SS G_CDS: -4.90 Total: -138.32 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -67.24 5.18 -62.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799682.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.785 kcal (2) G-P(sol) polarization free energy of solvation -67.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds