Wall clock time and date at job start Sun Mar 29 2020 21:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36880 * 119.99912 * 2 1 4 4 H 1.08005 * 120.00091 * 204.43964 * 3 2 1 5 5 C 1.38832 * 120.00357 * 24.42985 * 3 2 1 6 6 N 1.31557 * 119.99907 * 10.49500 * 5 3 2 7 7 Si 1.86798 * 120.00151 * 190.49337 * 5 3 2 8 8 H 1.48501 * 109.47324 * 84.93482 * 7 5 3 9 9 H 1.48502 * 109.46937 * 204.93222 * 7 5 3 10 10 H 1.48493 * 109.47352 * 324.93327 * 7 5 3 11 11 C 1.38838 * 120.00153 * 179.97438 * 2 1 3 12 12 C 1.39194 * 119.65172 * 185.00359 * 11 2 1 13 13 C 1.39502 * 118.92816 * 180.23317 * 12 11 2 14 14 C 1.48152 * 120.88155 * 179.75134 * 13 12 11 15 15 N 1.34774 * 119.99870 * 179.97438 * 14 13 12 16 16 O 1.21512 * 119.99776 * 359.97438 * 14 13 12 17 17 C 1.40044 * 118.23478 * 359.50952 * 13 12 11 18 18 C 1.38033 * 119.18543 * 0.49209 * 17 13 12 19 19 N 1.31846 * 121.01011 * 359.74965 * 18 17 13 20 20 H 1.08996 * 109.47547 * 274.55161 * 1 2 3 21 21 H 1.08998 * 109.47055 * 34.55863 * 1 2 3 22 22 H 1.09005 * 109.47089 * 154.55230 * 1 2 3 23 23 H 0.96996 * 120.00043 * 179.97438 * 6 5 3 24 24 H 1.08005 * 120.53491 * 359.95791 * 12 11 2 25 25 H 0.97000 * 119.99981 * 0.02562 * 15 14 13 26 26 H 0.97003 * 119.99882 * 179.97438 * 15 14 13 27 27 H 1.08000 * 120.40530 * 180.23674 * 17 13 12 28 28 H 1.07998 * 119.49908 * 179.77040 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1854 0.0000 4 1 3.1568 1.2274 -0.3870 5 6 1.5485 2.3340 0.4972 6 7 0.4113 2.2500 1.1535 7 14 2.3546 3.9985 0.2346 8 1 1.9595 4.5360 -1.0922 9 1 1.9141 4.9353 1.2993 10 1 3.8309 3.8474 0.2878 11 6 2.1592 -1.2024 0.0005 12 6 3.5471 -1.1961 0.1060 13 6 4.2298 -2.4127 0.1001 14 6 5.7070 -2.4562 0.2045 15 7 6.3483 -3.6416 0.1975 16 8 6.3402 -1.4232 0.2964 17 6 3.4813 -3.5919 -0.0020 18 6 2.1071 -3.5103 -0.1026 19 7 1.4938 -2.3431 -0.0990 20 1 -0.3634 0.0815 1.0244 21 1 -0.3633 0.8463 -0.5829 22 1 -0.3633 -0.9280 -0.4416 23 1 -0.0083 3.0524 1.5012 24 1 4.0871 -0.2642 0.1867 25 1 5.8428 -4.4661 0.1238 26 1 7.3156 -3.6701 0.2654 27 1 3.9736 -4.5532 -0.0060 28 1 1.5252 -4.4163 -0.1853 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166800751.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:59 Heat of formation + Delta-G solvation = -9.240421 kcal Electronic energy + Delta-G solvation = -14557.762175 eV Core-core repulsion = 11994.186366 eV Total energy + Delta-G solvation = -2563.575809 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.27575 -39.91587 -37.67554 -34.92045 -33.87088 -32.94263 -30.67282 -28.52359 -26.14722 -24.98523 -23.37022 -21.32398 -19.56226 -19.02255 -17.92031 -17.41771 -16.56333 -16.25685 -16.06964 -15.91040 -15.37855 -15.19289 -14.68219 -14.49740 -13.89020 -13.34657 -13.01701 -12.69023 -12.64190 -12.30311 -12.09532 -11.38665 -11.31306 -10.81666 -10.62576 -10.46076 -10.09023 -8.73519 -8.32649 -5.89032 0.05243 0.67856 1.38828 1.43080 1.51224 2.02701 2.19481 2.49868 2.86898 2.97505 3.36203 3.94069 3.96255 4.44474 4.48080 4.59610 4.81642 4.99022 5.05883 5.23955 5.30269 5.33321 5.43361 5.76211 5.89655 6.11960 6.45276 6.57303 7.16651 7.29146 7.31244 7.80977 8.62819 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.030453 B = 0.009221 C = 0.007206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.240819 B = 3035.847699 C = 3884.957332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.146 3.854 2 N -0.448 5.448 3 C -0.335 4.335 4 H 0.088 0.912 5 C -0.008 4.008 6 N -0.897 5.897 7 Si 0.995 3.005 8 H -0.266 1.266 9 H -0.274 1.274 10 H -0.270 1.270 11 C 0.347 3.653 12 C -0.222 4.222 13 C -0.060 4.060 14 C 0.565 3.435 15 N -0.816 5.816 16 O -0.589 6.589 17 C -0.246 4.246 18 C 0.150 3.850 19 N -0.575 5.575 20 H 0.037 0.963 21 H 0.043 0.957 22 H 0.058 0.942 23 H 0.274 0.726 24 H 0.105 0.895 25 H 0.420 0.580 26 H 0.414 0.586 27 H 0.173 0.827 28 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.344 -11.901 -2.236 13.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 N -0.139 5.139 3 C -0.464 4.464 4 H 0.106 0.894 5 C -0.210 4.210 6 N -0.533 5.533 7 Si 0.818 3.182 8 H -0.191 1.191 9 H -0.199 1.199 10 H -0.194 1.194 11 C 0.108 3.892 12 C -0.251 4.251 13 C -0.071 4.071 14 C 0.350 3.650 15 N -0.382 5.382 16 O -0.470 6.470 17 C -0.272 4.272 18 C -0.011 4.011 19 N -0.297 5.297 20 H 0.055 0.945 21 H 0.062 0.938 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.123 0.877 25 H 0.254 0.746 26 H 0.247 0.753 27 H 0.190 0.810 28 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 4.371 -10.675 -2.143 11.733 hybrid contribution 1.139 0.812 0.149 1.406 sum 5.510 -9.863 -1.994 11.473 Atomic orbital electron populations 1.21117 0.79483 0.98878 1.00264 1.42585 1.05388 1.01521 1.64410 1.19782 1.01025 0.85237 1.40324 0.89403 1.26232 0.97101 1.03313 0.94377 1.70176 1.18493 1.30826 1.33846 0.84913 0.78415 0.76489 0.78427 1.19068 1.19924 1.19416 1.18634 0.88583 0.86754 0.95224 1.21225 0.93494 0.98548 1.11831 1.19995 0.92692 0.94294 1.00074 1.18421 0.87472 0.84121 0.74957 1.43382 1.11960 1.07487 1.75339 1.90768 1.69041 1.35499 1.51699 1.21885 0.95003 0.97515 1.12771 1.22937 0.92660 0.94464 0.91083 1.67056 1.41369 0.98054 1.23232 0.94478 0.93783 0.92318 0.91670 0.87669 0.74642 0.75288 0.80991 0.79204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 7.39 8.79 127.77 1.12 8.52 15 2 N -0.45 -24.25 3.11 -541.35 -1.69 -25.94 15 3 C -0.34 -18.78 8.89 84.05 0.75 -18.03 15 4 H 0.09 4.95 6.35 -2.91 -0.02 4.93 15 5 C -0.01 -0.41 5.14 84.88 0.44 0.02 15 6 N -0.90 -49.39 10.66 21.65 0.23 -49.16 15 7 Si 0.99 42.76 29.57 68.60 2.03 44.78 15 8 H -0.27 -10.93 7.11 99.48 0.71 -10.22 15 9 H -0.27 -11.36 7.11 99.48 0.71 -10.66 15 10 H -0.27 -11.59 7.11 99.48 0.71 -10.89 15 11 C 0.35 17.22 7.34 133.12 0.98 18.20 15 12 C -0.22 -10.63 8.83 22.80 0.20 -10.42 15 13 C -0.06 -2.24 5.91 -19.90 -0.12 -2.35 15 14 C 0.56 19.16 8.07 86.88 0.70 19.86 15 15 N -0.82 -15.98 8.83 -175.40 -1.55 -17.53 15 16 O -0.59 -25.81 17.28 -3.75 -0.06 -25.88 15 17 C -0.25 -6.94 9.61 22.66 0.22 -6.72 15 18 C 0.15 4.72 11.16 84.64 0.94 5.67 15 19 N -0.58 -24.66 8.98 -193.40 -1.74 -26.40 15 20 H 0.04 1.98 7.35 -2.39 -0.02 1.96 15 21 H 0.04 2.27 7.33 -2.39 -0.02 2.25 15 22 H 0.06 2.70 7.16 -2.38 -0.02 2.69 15 23 H 0.27 14.10 8.31 -92.71 -0.77 13.33 15 24 H 0.11 5.62 5.97 -2.91 -0.02 5.60 15 25 H 0.42 5.05 6.97 -92.71 -0.65 4.41 15 26 H 0.41 6.45 8.93 -92.71 -0.83 5.62 15 27 H 0.17 2.78 6.53 -2.91 -0.02 2.76 15 28 H 0.19 4.06 8.06 -2.91 -0.02 4.03 15 Total: -1.00 -71.76 246.44 2.20 -69.56 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -0.25 Total: 15.83 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 5.23 Total: 14.74 kcal Atomic # 7 Polarization: -114.29 SS G_CDS: -4.74 Total: -119.03 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.06 Total: -25.88 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -71.76 2.20 -69.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166800751.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.319 kcal (2) G-P(sol) polarization free energy of solvation -71.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds