Wall clock time and date at job start Sun Mar 29 2020 22:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46988 * 2 1 4 4 C 1.50699 * 109.47504 * 180.02562 * 3 2 1 5 5 N 1.31952 * 120.05818 * 84.75800 * 4 3 2 6 6 C 1.32259 * 120.08853 * 179.97438 * 5 4 3 7 7 C 1.38304 * 120.19584 * 359.97438 * 6 5 4 8 8 N 1.32142 * 120.11409 * 0.02562 * 7 6 5 9 9 C 1.32788 * 119.91206 * 359.97438 * 8 7 6 10 10 N 1.38828 * 120.10314 * 180.02562 * 9 8 7 11 11 C 1.46497 * 119.99950 * 94.60765 * 10 9 8 12 12 C 1.36894 * 119.99523 * 274.60724 * 10 9 8 13 13 H 1.07998 * 120.00755 * 6.89097 * 12 10 9 14 14 C 1.38831 * 119.99453 * 186.88811 * 12 10 9 15 15 N 1.31557 * 120.00170 * 7.00232 * 14 12 10 16 16 Si 1.86800 * 119.99729 * 187.00482 * 14 12 10 17 17 H 1.48494 * 109.47236 * 60.00146 * 16 14 12 18 18 H 1.48503 * 109.46808 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47282 * 299.99660 * 16 14 12 20 20 H 1.08996 * 109.46739 * 299.99689 * 1 2 3 21 21 H 1.08999 * 109.46793 * 60.00308 * 1 2 3 22 22 H 1.08993 * 109.46469 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47479 * 240.00255 * 2 1 3 24 24 H 1.08998 * 109.47300 * 119.99829 * 2 1 3 25 25 H 1.09000 * 109.47241 * 59.99628 * 3 2 1 26 26 H 1.09004 * 109.47367 * 300.00190 * 3 2 1 27 27 H 1.07998 * 119.89828 * 180.02562 * 6 5 4 28 28 H 1.08002 * 119.94307 * 179.74389 * 7 6 5 29 29 H 1.09001 * 109.46893 * 354.20899 * 11 10 9 30 30 H 1.08998 * 109.47264 * 114.21170 * 11 10 9 31 31 H 1.09001 * 109.47132 * 234.21159 * 11 10 9 32 32 H 0.96998 * 120.00318 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 7 4.2074 1.3385 -1.1382 6 6 5.5300 1.3391 -1.1395 7 6 6.2268 1.4492 0.0501 8 7 5.5733 1.5539 1.1939 9 6 4.2455 1.5538 1.2003 10 7 3.5550 1.6641 2.3996 11 6 3.1016 2.9769 2.8657 12 6 3.2978 0.5461 3.1466 13 1 3.7259 -0.4037 2.8622 14 6 2.4866 0.6334 4.2699 15 7 1.8547 1.7554 4.5394 16 14 2.2925 -0.8423 5.3986 17 1 3.6194 -1.2268 5.9433 18 1 1.3810 -0.4929 6.5177 19 1 1.7233 -1.9800 4.6326 20 1 -0.3632 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3632 -1.0276 0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.6766 1.9564 0.8899 26 1 1.6766 1.9564 -0.8900 27 1 6.0675 1.2541 -2.0724 28 1 7.3068 1.4451 0.0447 29 1 3.4833 3.7507 2.1996 30 1 2.0120 3.0050 2.8686 31 1 3.4722 3.1517 3.8758 32 1 1.2882 1.8165 5.3244 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166802399.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:15 Heat of formation + Delta-G solvation = 69.300898 kcal Electronic energy + Delta-G solvation = -15367.596763 eV Core-core repulsion = 12943.259855 eV Total energy + Delta-G solvation = -2424.336908 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.37157 -35.97469 -34.80900 -32.93324 -31.54313 -29.49864 -26.74510 -26.09313 -24.33341 -22.63192 -21.33031 -20.58302 -17.34754 -17.09038 -16.02467 -15.47607 -14.41675 -14.19013 -14.15185 -13.61427 -13.09210 -12.73193 -12.51323 -12.14618 -11.44313 -11.26339 -10.97865 -10.85603 -10.82012 -10.73439 -10.65210 -10.33799 -10.14431 -10.01901 -9.96056 -8.89180 -8.43174 -8.22731 -7.19880 -5.81253 -3.31151 1.48306 1.86944 3.33877 3.38856 3.40417 4.25124 4.38597 4.65407 4.83435 5.15322 5.31445 5.39227 5.62360 5.65645 5.74442 5.83667 5.96602 6.16862 6.28335 6.39458 6.42204 6.52937 6.62594 6.84239 6.95146 7.06835 7.39283 7.62739 7.74658 7.97935 8.25643 8.60091 9.06812 9.72372 10.05274 11.17958 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024506 B = 0.011601 C = 0.009443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.315299 B = 2413.032770 C = 2964.434103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C -0.053 4.053 4 C 0.074 3.926 5 N -0.444 5.444 6 C 0.010 3.990 7 C 0.046 3.954 8 N -0.465 5.465 9 C 0.372 3.628 10 N -0.548 5.548 11 C 0.172 3.828 12 C -0.251 4.251 13 H 0.073 0.927 14 C 0.011 3.989 15 N -0.910 5.910 16 Si 0.914 3.086 17 H -0.283 1.283 18 H -0.288 1.288 19 H -0.281 1.281 20 H 0.060 0.940 21 H 0.046 0.954 22 H 0.048 0.952 23 H 0.050 0.950 24 H 0.075 0.925 25 H 0.096 0.904 26 H 0.064 0.936 27 H 0.156 0.844 28 H 0.153 0.847 29 H -0.007 1.007 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.353 -0.440 -8.345 8.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 C -0.091 4.091 4 C -0.073 4.073 5 N -0.160 5.160 6 C -0.148 4.148 7 C -0.115 4.115 8 N -0.183 5.183 9 C 0.140 3.860 10 N -0.270 5.270 11 C 0.029 3.971 12 C -0.379 4.379 13 H 0.091 0.909 14 C -0.187 4.187 15 N -0.555 5.555 16 Si 0.743 3.257 17 H -0.209 1.209 18 H -0.213 1.213 19 H -0.207 1.207 20 H 0.079 0.921 21 H 0.065 0.935 22 H 0.067 0.933 23 H 0.069 0.931 24 H 0.093 0.907 25 H 0.115 0.885 26 H 0.082 0.918 27 H 0.173 0.827 28 H 0.170 0.830 29 H 0.012 0.988 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.223 -0.376 -8.126 8.226 hybrid contribution 0.287 -0.768 0.663 1.054 sum 1.510 -1.143 -7.463 7.700 Atomic orbital electron populations 1.21705 0.95978 1.01002 1.01554 1.21356 0.95403 0.95927 1.02066 1.20358 0.87429 0.98306 1.03024 1.22988 0.98363 0.96615 0.89319 1.68097 1.08663 1.09555 1.29683 1.23405 0.91081 1.01201 0.99164 1.23534 1.01038 0.98000 0.88891 1.68708 1.11097 1.09308 1.29198 1.19208 0.87195 0.90355 0.89240 1.41336 1.60615 1.06205 1.18801 1.21178 0.99683 0.80434 0.95825 1.19050 1.25477 0.87031 1.06322 0.90938 1.24809 0.97988 0.97544 0.98351 1.70125 1.32318 1.24811 1.28244 0.86191 0.77683 0.81587 0.80266 1.20939 1.21314 1.20733 0.92138 0.93486 0.93309 0.93105 0.90662 0.88537 0.91777 0.82670 0.83010 0.98818 0.91622 0.93670 0.93383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.91 37.16 0.37 -1.88 16 2 C -0.11 -1.98 5.92 -26.73 -0.16 -2.13 16 3 C -0.05 -1.00 5.37 -27.88 -0.15 -1.15 16 4 C 0.07 1.53 6.07 -82.12 -0.50 1.03 16 5 N -0.44 -8.44 10.42 -9.07 -0.09 -8.53 16 6 C 0.01 0.17 11.21 -17.34 -0.19 -0.03 16 7 C 0.05 0.80 11.22 -17.39 -0.20 0.60 16 8 N -0.46 -10.27 10.53 -12.23 -0.13 -10.40 16 9 C 0.37 8.62 5.94 -154.77 -0.92 7.70 16 10 N -0.55 -13.90 2.14 -122.31 -0.26 -14.16 16 11 C 0.17 4.23 8.23 59.85 0.49 4.72 16 12 C -0.25 -6.78 9.62 -15.07 -0.14 -6.92 16 13 H 0.07 1.98 7.84 -52.49 -0.41 1.57 16 14 C 0.01 0.29 5.39 -17.45 -0.09 0.20 16 15 N -0.91 -24.85 9.61 55.49 0.53 -24.31 16 16 Si 0.91 21.42 29.56 -169.99 -5.02 16.39 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 20 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.07 1.56 7.97 -51.93 -0.41 1.15 16 25 H 0.10 2.03 6.40 -51.93 -0.33 1.70 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.16 1.85 8.06 -52.49 -0.42 1.42 16 28 H 0.15 2.00 8.06 -52.49 -0.42 1.58 16 29 H -0.01 -0.16 7.90 -51.93 -0.41 -0.57 16 30 H 0.07 1.67 6.52 -51.93 -0.34 1.33 16 31 H 0.04 1.19 7.35 -51.93 -0.38 0.81 16 32 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 271.57 15.07 4.09 4.09 Total: -1.00 -29.07 271.57 -6.76 -35.84 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -4.38 Total: -1.05 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -1.49 Total: 2.13 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: 0.05 Total: -57.40 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.07 -6.76 -35.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166802399.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.136 kcal (2) G-P(sol) polarization free energy of solvation -29.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds