Wall clock time and date at job start Sun Mar 29 2020 22:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46988 * 2 1 4 4 C 1.50699 * 109.47504 * 180.02562 * 3 2 1 5 5 N 1.31952 * 120.05818 * 84.75800 * 4 3 2 6 6 C 1.32259 * 120.08853 * 179.97438 * 5 4 3 7 7 C 1.38304 * 120.19584 * 359.97438 * 6 5 4 8 8 N 1.32142 * 120.11409 * 0.02562 * 7 6 5 9 9 C 1.32788 * 119.91206 * 359.97438 * 8 7 6 10 10 N 1.38828 * 120.10314 * 180.02562 * 9 8 7 11 11 C 1.46497 * 119.99950 * 94.60765 * 10 9 8 12 12 C 1.36894 * 119.99523 * 274.60724 * 10 9 8 13 13 H 1.07998 * 120.00755 * 6.89097 * 12 10 9 14 14 C 1.38831 * 119.99453 * 186.88811 * 12 10 9 15 15 N 1.31557 * 120.00170 * 7.00232 * 14 12 10 16 16 Si 1.86800 * 119.99729 * 187.00482 * 14 12 10 17 17 H 1.48494 * 109.47236 * 60.00146 * 16 14 12 18 18 H 1.48503 * 109.46808 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47282 * 299.99660 * 16 14 12 20 20 H 1.08996 * 109.46739 * 299.99689 * 1 2 3 21 21 H 1.08999 * 109.46793 * 60.00308 * 1 2 3 22 22 H 1.08993 * 109.46469 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47479 * 240.00255 * 2 1 3 24 24 H 1.08998 * 109.47300 * 119.99829 * 2 1 3 25 25 H 1.09000 * 109.47241 * 59.99628 * 3 2 1 26 26 H 1.09004 * 109.47367 * 300.00190 * 3 2 1 27 27 H 1.07998 * 119.89828 * 180.02562 * 6 5 4 28 28 H 1.08002 * 119.94307 * 179.74389 * 7 6 5 29 29 H 1.09001 * 109.46893 * 354.20899 * 11 10 9 30 30 H 1.08998 * 109.47264 * 114.21170 * 11 10 9 31 31 H 1.09001 * 109.47132 * 234.21159 * 11 10 9 32 32 H 0.96998 * 120.00318 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 7 4.2074 1.3385 -1.1382 6 6 5.5300 1.3391 -1.1395 7 6 6.2268 1.4492 0.0501 8 7 5.5733 1.5539 1.1939 9 6 4.2455 1.5538 1.2003 10 7 3.5550 1.6641 2.3996 11 6 3.1016 2.9769 2.8657 12 6 3.2978 0.5461 3.1466 13 1 3.7259 -0.4037 2.8622 14 6 2.4866 0.6334 4.2699 15 7 1.8547 1.7554 4.5394 16 14 2.2925 -0.8423 5.3986 17 1 3.6194 -1.2268 5.9433 18 1 1.3810 -0.4929 6.5177 19 1 1.7233 -1.9800 4.6326 20 1 -0.3632 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3632 -1.0276 0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.6766 1.9564 0.8899 26 1 1.6766 1.9564 -0.8900 27 1 6.0675 1.2541 -2.0724 28 1 7.3068 1.4451 0.0447 29 1 3.4833 3.7507 2.1996 30 1 2.0120 3.0050 2.8686 31 1 3.4722 3.1517 3.8758 32 1 1.2882 1.8165 5.3244 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166802399.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:15 Heat of formation + Delta-G solvation = 52.060739 kcal Electronic energy + Delta-G solvation = -15368.344352 eV Core-core repulsion = 12943.259855 eV Total energy + Delta-G solvation = -2425.084497 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.90188 -37.77543 -36.30800 -34.54362 -33.32359 -31.13990 -28.33073 -27.95677 -26.07452 -24.09970 -23.08794 -22.04501 -19.25876 -18.63358 -17.84583 -16.93761 -16.13064 -15.83806 -15.61864 -15.19576 -14.77989 -14.31316 -14.20987 -13.75748 -13.17008 -12.87224 -12.73142 -12.63049 -12.36950 -12.36102 -12.19807 -12.19464 -11.98357 -11.71033 -11.47654 -10.85470 -10.10788 -9.73146 -9.09394 -7.84639 -5.36652 0.00596 0.34751 1.44834 1.47367 1.53694 2.40070 2.87931 3.02308 3.25471 3.38519 3.80142 3.86477 4.20747 4.25808 4.31067 4.46292 4.52586 4.65412 4.78545 4.91603 4.94321 5.04982 5.23016 5.33161 5.40177 5.48546 5.49886 5.64271 5.72123 6.20229 6.53039 7.02662 7.10158 7.77185 8.09005 9.13340 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024506 B = 0.011601 C = 0.009443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.315299 B = 2413.032770 C = 2964.434103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 C -0.047 4.047 4 C 0.064 3.936 5 N -0.451 5.451 6 C 0.034 3.966 7 C 0.049 3.951 8 N -0.499 5.499 9 C 0.331 3.669 10 N -0.560 5.560 11 C 0.192 3.808 12 C -0.258 4.258 13 H 0.060 0.940 14 C -0.034 4.034 15 N -0.930 5.930 16 Si 0.970 3.030 17 H -0.285 1.285 18 H -0.285 1.285 19 H -0.274 1.274 20 H 0.042 0.958 21 H 0.070 0.930 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.039 0.961 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.211 0.789 28 H 0.198 0.802 29 H 0.008 0.992 30 H 0.050 0.950 31 H 0.017 0.983 32 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.337 -1.140 -10.481 10.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.140 4.140 3 C -0.086 4.086 4 C -0.080 4.080 5 N -0.166 5.166 6 C -0.126 4.126 7 C -0.113 4.113 8 N -0.217 5.217 9 C 0.101 3.899 10 N -0.282 5.282 11 C 0.048 3.952 12 C -0.386 4.386 13 H 0.078 0.922 14 C -0.229 4.229 15 N -0.577 5.577 16 Si 0.798 3.202 17 H -0.211 1.211 18 H -0.211 1.211 19 H -0.200 1.200 20 H 0.061 0.939 21 H 0.089 0.911 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.058 0.942 25 H 0.087 0.913 26 H 0.103 0.897 27 H 0.228 0.772 28 H 0.215 0.785 29 H 0.026 0.974 30 H 0.069 0.931 31 H 0.035 0.965 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.183 -1.077 -10.274 10.558 hybrid contribution 0.178 -0.549 1.132 1.271 sum 2.361 -1.626 -9.142 9.581 Atomic orbital electron populations 1.21656 0.94027 1.02078 1.01840 1.21268 0.97078 0.94962 1.00723 1.20291 0.87012 0.98773 1.02525 1.22909 0.98920 0.97057 0.89077 1.68206 1.10143 1.09867 1.28405 1.24311 0.90176 0.97149 1.01002 1.24301 1.03066 0.96089 0.87797 1.68547 1.10934 1.10248 1.32007 1.19309 0.87761 0.93797 0.89016 1.41265 1.61611 1.05531 1.19774 1.20819 0.98544 0.81236 0.94579 1.19101 1.25377 0.87416 1.06690 0.92157 1.25480 0.97960 0.99942 0.99526 1.70268 1.32830 1.26149 1.28414 0.85306 0.77337 0.79060 0.78513 1.21091 1.21068 1.19986 0.93877 0.91119 0.91856 0.91976 0.94242 0.91330 0.89749 0.77239 0.78512 0.97385 0.93138 0.96478 0.93743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.18 9.91 71.98 0.71 -3.47 16 2 C -0.10 -3.67 5.92 30.60 0.18 -3.48 16 3 C -0.05 -1.81 5.37 29.85 0.16 -1.65 16 4 C 0.06 2.61 6.07 42.81 0.26 2.87 16 5 N -0.45 -15.84 10.42 -182.62 -1.90 -17.74 16 6 C 0.03 0.94 11.21 84.64 0.95 1.89 16 7 C 0.05 1.52 11.22 84.66 0.95 2.47 16 8 N -0.50 -21.57 10.53 -192.61 -2.03 -23.59 16 9 C 0.33 15.40 5.94 133.07 0.79 16.19 16 10 N -0.56 -29.32 2.14 -540.88 -1.16 -30.47 16 11 C 0.19 9.85 8.23 127.77 1.05 10.90 16 12 C -0.26 -14.38 9.62 84.05 0.81 -13.57 16 13 H 0.06 3.43 7.84 -2.91 -0.02 3.40 16 14 C -0.03 -1.86 5.39 84.88 0.46 -1.40 16 15 N -0.93 -52.60 9.61 21.65 0.21 -52.39 16 16 Si 0.97 44.85 29.56 68.60 2.03 46.88 16 17 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 18 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 20 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 21 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 22 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.04 1.68 7.97 -2.39 -0.02 1.66 16 25 H 0.07 3.00 6.40 -2.39 -0.02 2.98 16 26 H 0.08 2.81 8.14 -2.38 -0.02 2.79 16 27 H 0.21 3.56 8.06 -2.91 -0.02 3.53 16 28 H 0.20 4.18 8.06 -2.91 -0.02 4.16 16 29 H 0.01 0.36 7.90 -2.39 -0.02 0.34 16 30 H 0.05 2.71 6.52 -2.39 -0.02 2.69 16 31 H 0.02 0.93 7.35 -2.39 -0.02 0.91 16 32 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -64.87 271.57 4.57 -60.30 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: 1.10 Total: 6.25 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 6.32 Total: 10.76 kcal Atomic # 7 Polarization: -119.31 SS G_CDS: -4.88 Total: -124.19 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -64.87 4.57 -60.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166802399.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.364 kcal (2) G-P(sol) polarization free energy of solvation -64.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds