Wall clock time and date at job start Sun Mar 29 2020 22:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47612 * 2 1 4 4 C 1.53001 * 109.47451 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46964 * 179.97438 * 4 3 2 6 6 C 1.36930 * 119.99970 * 264.51222 * 5 4 3 7 7 H 1.08001 * 120.00051 * 145.28770 * 6 5 4 8 8 C 1.38853 * 119.99979 * 325.28641 * 6 5 4 9 9 N 1.31535 * 120.00054 * 338.32157 * 8 6 5 10 10 Si 1.86796 * 119.99867 * 158.32750 * 8 6 5 11 11 H 1.48505 * 109.47186 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47444 * 119.99709 * 10 8 6 13 13 H 1.48499 * 109.46912 * 239.99932 * 10 8 6 14 14 C 1.38515 * 119.99865 * 84.51415 * 5 4 3 15 15 C 1.39709 * 120.54105 * 184.99936 * 14 5 4 16 16 C 1.38136 * 118.32490 * 179.97438 * 15 14 5 17 17 N 1.32563 * 119.19402 * 359.97438 * 16 15 14 18 18 C 1.31784 * 121.02783 * 0.02562 * 17 16 15 19 19 N 1.31735 * 121.84884 * 359.73884 * 18 17 16 20 20 H 1.08999 * 109.47521 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.46673 * 300.00097 * 1 2 3 22 22 H 1.08995 * 109.47476 * 59.99995 * 1 2 3 23 23 H 1.09005 * 109.47393 * 239.99939 * 2 1 3 24 24 H 1.09004 * 109.47317 * 120.00155 * 2 1 3 25 25 H 1.08997 * 109.46866 * 59.99865 * 3 2 1 26 26 H 1.09004 * 109.46906 * 300.00406 * 3 2 1 27 27 H 1.09002 * 109.46902 * 59.99861 * 4 3 2 28 28 H 1.08999 * 109.46553 * 300.00098 * 4 3 2 29 29 H 0.97001 * 119.99809 * 179.97438 * 9 8 6 30 30 H 1.07997 * 120.83486 * 359.97438 * 15 14 5 31 31 H 1.07995 * 120.40028 * 180.02562 * 16 15 14 32 32 H 1.07998 * 119.07901 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0584 2.8236 -0.0013 6 6 4.3930 3.4310 -1.1820 7 1 4.2126 4.4873 -1.3160 8 6 4.9644 2.6887 -2.2070 9 7 5.5709 1.5531 -1.9375 10 14 4.8720 3.3031 -3.9686 11 1 4.1417 4.5956 -4.0044 12 1 6.2457 3.4954 -4.4986 13 1 4.1544 2.3064 -4.8034 14 6 4.1816 3.5152 1.1926 15 6 4.5462 4.8639 1.1974 16 6 4.6551 5.5090 2.4140 17 7 4.4117 4.8333 3.5283 18 6 4.0696 3.5612 3.4903 19 7 3.9493 2.9073 2.3530 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 3.9330 0.9287 -0.8909 28 1 3.9337 0.9284 0.8891 29 1 5.9697 1.0344 -2.6536 30 1 4.7380 5.3888 0.2733 31 1 4.9343 6.5513 2.4568 32 1 3.8781 3.0413 4.4173 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167130879.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:40 Heat of formation + Delta-G solvation = 27.727029 kcal Electronic energy + Delta-G solvation = -15005.951368 eV Core-core repulsion = 12579.811682 eV Total energy + Delta-G solvation = -2426.139686 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.34155 -38.56315 -35.68876 -34.41734 -33.25045 -31.72432 -29.70138 -27.00660 -25.14233 -24.33839 -22.79516 -21.88452 -19.64907 -18.27530 -17.63597 -16.75847 -16.27375 -15.82679 -15.63670 -15.35570 -15.12238 -14.70517 -14.06464 -13.79149 -13.60801 -13.31281 -13.15695 -12.92375 -12.25713 -12.06666 -11.98551 -11.88405 -11.66333 -11.40849 -11.15399 -10.94021 -10.43626 -9.74722 -8.93025 -8.34196 -6.03075 0.53938 0.78357 1.42632 1.44215 1.56162 2.19721 2.82750 2.88187 3.38511 3.70844 3.85308 4.07633 4.15988 4.30027 4.41344 4.55643 4.70207 4.84181 4.86655 4.98765 4.99619 5.00963 5.13338 5.17130 5.33302 5.38538 5.41143 5.55689 5.84190 6.11255 6.36907 6.71269 7.25275 7.45770 7.88854 8.60069 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.017548 B = 0.012440 C = 0.008007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.209892 B = 2250.287084 C = 3496.147822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.112 4.112 4 C 0.125 3.875 5 N -0.421 5.421 6 C -0.340 4.340 7 H 0.093 0.907 8 C 0.002 3.998 9 N -0.886 5.886 10 Si 0.989 3.011 11 H -0.258 1.258 12 H -0.278 1.278 13 H -0.273 1.273 14 C 0.371 3.629 15 C -0.317 4.317 16 C 0.162 3.838 17 N -0.613 5.613 18 C 0.317 3.683 19 N -0.617 5.617 20 H 0.071 0.929 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.042 0.958 26 H 0.046 0.954 27 H 0.088 0.912 28 H 0.044 0.956 29 H 0.275 0.725 30 H 0.130 0.870 31 H 0.183 0.817 32 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.565 0.182 1.038 5.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C -0.151 4.151 4 C 0.001 3.999 5 N -0.113 5.113 6 C -0.468 4.468 7 H 0.111 0.889 8 C -0.202 4.202 9 N -0.522 5.522 10 Si 0.811 3.189 11 H -0.182 1.182 12 H -0.203 1.203 13 H -0.198 1.198 14 C 0.126 3.874 15 C -0.347 4.347 16 C 0.004 3.996 17 N -0.337 5.337 18 C 0.026 3.974 19 N -0.345 5.345 20 H 0.090 0.910 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.105 0.895 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.148 0.852 31 H 0.200 0.800 32 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -5.649 -0.582 1.452 5.862 hybrid contribution 0.482 0.520 -1.544 1.699 sum -5.167 -0.062 -0.092 5.168 Atomic orbital electron populations 1.21707 0.94253 1.02351 1.01676 1.21393 0.96994 0.94990 1.01842 1.21771 0.95367 0.97821 1.00142 1.21458 0.93090 0.83202 1.02153 1.42672 1.55013 1.12027 1.01584 1.19724 1.40847 0.96470 0.89774 0.88915 1.26256 0.93187 0.96481 1.04302 1.70098 1.31296 1.16063 1.34716 0.84945 0.78221 0.78998 0.76689 1.18211 1.20337 1.19780 1.19337 0.90648 0.90548 0.86892 1.22060 1.16019 0.95637 1.01027 1.23055 0.89623 1.00195 0.86724 1.68352 1.23426 1.10249 1.31685 1.24931 0.89068 0.87949 0.95403 1.67950 1.27634 1.40607 0.98303 0.91025 0.92884 0.92896 0.92290 0.91922 0.93906 0.93518 0.89456 0.93740 0.91508 0.85183 0.80020 0.77511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 9.91 71.98 0.71 -2.95 16 2 C -0.11 -3.64 5.93 30.59 0.18 -3.45 16 3 C -0.11 -4.47 5.51 30.60 0.17 -4.31 16 4 C 0.12 5.90 4.96 86.38 0.43 6.33 16 5 N -0.42 -21.44 2.64 -517.22 -1.37 -22.81 16 6 C -0.34 -17.42 8.70 84.04 0.73 -16.68 16 7 H 0.09 4.63 6.60 -2.91 -0.02 4.61 16 8 C 0.00 0.09 4.92 84.88 0.42 0.51 16 9 N -0.89 -46.61 11.36 21.65 0.25 -46.37 16 10 Si 0.99 39.00 29.60 68.60 2.03 41.03 16 11 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 12 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 13 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 14 C 0.37 18.13 7.33 133.18 0.98 19.11 16 15 C -0.32 -13.97 9.37 22.60 0.21 -13.76 16 16 C 0.16 6.17 11.29 84.56 0.95 7.12 16 17 N -0.61 -23.99 10.43 -200.31 -2.09 -26.08 16 18 C 0.32 12.49 12.28 180.91 2.22 14.71 16 19 N -0.62 -28.19 9.33 -197.55 -1.84 -30.04 16 20 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 21 H 0.05 1.33 8.14 -2.39 -0.02 1.32 16 22 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 24 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.09 4.45 5.38 -2.39 -0.01 4.44 16 28 H 0.04 2.18 7.52 -2.39 -0.02 2.16 16 29 H 0.28 13.49 8.31 -92.71 -0.77 12.72 16 30 H 0.13 5.62 6.43 -2.91 -0.02 5.60 16 31 H 0.18 5.29 8.06 -2.91 -0.02 5.27 16 32 H 0.21 6.35 8.06 -2.91 -0.02 6.33 16 Total: -1.00 -59.03 272.24 5.08 -53.95 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 1.10 Total: 23.68 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 7.01 Total: 6.62 kcal Atomic # 7 Polarization: -120.24 SS G_CDS: -5.05 Total: -125.29 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Total: -59.03 5.08 -53.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167130879.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.680 kcal (2) G-P(sol) polarization free energy of solvation -59.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds