Wall clock time and date at job start Sun Mar 29 2020 22:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47329 * 2 1 4 4 C 1.53004 * 109.47221 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46959 * 179.97438 * 4 3 2 6 6 C 1.36902 * 120.00125 * 95.41728 * 5 4 3 7 7 H 1.07996 * 120.00602 * 219.17989 * 6 5 4 8 8 C 1.38823 * 119.99673 * 39.18521 * 6 5 4 9 9 N 1.31560 * 120.00121 * 19.87930 * 8 6 5 10 10 Si 1.86806 * 120.00029 * 199.88436 * 8 6 5 11 11 H 1.48491 * 109.47078 * 89.99671 * 10 8 6 12 12 H 1.48504 * 109.46981 * 210.00016 * 10 8 6 13 13 H 1.48499 * 109.46672 * 329.99510 * 10 8 6 14 14 C 1.38879 * 120.00105 * 275.42377 * 5 4 3 15 15 C 1.39573 * 120.16543 * 4.71543 * 14 5 4 16 16 C 1.38567 * 117.90422 * 179.78884 * 15 14 5 17 17 C 1.38820 * 118.04536 * 0.48713 * 16 15 14 18 18 N 1.31858 * 120.03175 * 359.75016 * 17 16 15 19 19 N 1.28345 * 122.28603 * 359.97438 * 18 17 16 20 20 H 1.09004 * 109.47514 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47103 * 300.00022 * 1 2 3 22 22 H 1.09003 * 109.47477 * 59.99930 * 1 2 3 23 23 H 1.09001 * 109.47103 * 239.99978 * 2 1 3 24 24 H 1.09003 * 109.47477 * 120.00070 * 2 1 3 25 25 H 1.09001 * 109.47046 * 59.99942 * 3 2 1 26 26 H 1.09000 * 109.47324 * 300.00135 * 3 2 1 27 27 H 1.08991 * 109.47081 * 300.00129 * 4 3 2 28 28 H 1.09005 * 109.47171 * 60.00448 * 4 3 2 29 29 H 0.97008 * 120.00304 * 180.02562 * 9 8 6 30 30 H 1.08002 * 121.04787 * 0.02562 * 15 14 5 31 31 H 1.07993 * 120.97594 * 180.21678 * 16 15 14 32 32 H 1.07998 * 119.98161 * 179.77501 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.3925 3.4321 1.1787 7 1 4.1467 4.4714 1.3390 8 6 5.0476 2.7130 2.1692 9 7 5.6894 1.6062 1.8631 10 14 5.0176 3.3171 3.9366 11 1 3.8445 2.7370 4.6381 12 1 6.2642 2.8957 4.6249 13 1 4.9206 4.7988 3.9516 14 6 4.1821 3.5159 -1.1989 15 6 3.7505 2.9352 -2.3924 16 6 3.8922 3.6693 -3.5591 17 6 4.4634 4.9315 -3.4708 18 7 4.8485 5.4011 -2.3004 19 7 4.7157 4.7295 -1.2148 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8932 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9563 0.8900 26 1 1.6766 1.9564 -0.8900 27 1 3.9337 0.9285 0.8890 28 1 3.9330 0.9288 -0.8909 29 1 6.1468 1.1035 2.5553 30 1 3.3162 1.9465 -2.4057 31 1 3.5717 3.2695 -4.5097 32 1 4.5922 5.5291 -4.3611 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167132203.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:37 Heat of formation + Delta-G solvation = 53.716366 kcal Electronic energy + Delta-G solvation = -15008.519166 eV Core-core repulsion = 12583.506462 eV Total energy + Delta-G solvation = -2425.012704 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.68348 -36.93139 -34.27500 -32.38452 -31.81890 -29.90374 -28.26672 -25.11105 -23.64752 -22.86531 -21.28088 -20.49328 -17.82386 -16.44616 -15.77909 -15.41028 -14.91041 -14.69077 -14.01858 -13.61128 -13.38632 -13.23286 -12.51639 -12.18093 -11.97229 -11.71848 -11.50116 -11.17368 -10.75809 -10.71215 -10.40812 -10.37283 -10.12465 -9.89307 -9.60285 -9.22445 -8.78619 -8.34296 -6.99041 -6.41009 -3.99180 1.95282 2.32103 3.16075 3.20988 3.25971 4.00246 4.49502 4.69555 4.99374 5.28241 5.34867 5.45727 5.47136 5.66449 5.71337 5.81224 5.97119 6.06003 6.10219 6.15542 6.17623 6.26236 6.41749 6.55609 6.74160 6.79891 7.02463 7.11249 7.21102 7.48686 8.02227 8.54392 9.10284 9.47412 10.20083 10.56911 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.017219 B = 0.012698 C = 0.007965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.687602 B = 2204.542785 C = 3514.482474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.136 4.136 4 C 0.119 3.881 5 N -0.406 5.406 6 C -0.296 4.296 7 H 0.097 0.903 8 C 0.036 3.964 9 N -0.864 5.864 10 Si 0.923 3.077 11 H -0.276 1.276 12 H -0.283 1.283 13 H -0.265 1.265 14 C 0.309 3.691 15 C -0.213 4.213 16 C -0.085 4.085 17 C -0.092 4.092 18 N -0.204 5.204 19 N -0.310 5.310 20 H 0.049 0.951 21 H 0.052 0.948 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.110 0.890 28 H 0.050 0.950 29 H 0.270 0.730 30 H 0.128 0.872 31 H 0.125 0.875 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.014 -4.011 -4.147 9.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.175 4.175 4 C -0.005 4.005 5 N -0.096 5.096 6 C -0.425 4.425 7 H 0.115 0.885 8 C -0.170 4.170 9 N -0.500 5.500 10 Si 0.749 3.251 11 H -0.202 1.202 12 H -0.208 1.208 13 H -0.190 1.190 14 C 0.065 3.935 15 C -0.248 4.248 16 C -0.113 4.113 17 C -0.262 4.262 18 N -0.049 5.049 19 N -0.169 5.169 20 H 0.068 0.932 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.128 0.872 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.145 0.855 31 H 0.142 0.858 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.253 -3.150 -2.902 7.579 hybrid contribution -0.577 -1.100 -0.178 1.254 sum -6.829 -4.250 -3.080 8.613 Atomic orbital electron populations 1.21759 0.96362 1.00902 1.01645 1.21438 0.95265 0.97294 1.01822 1.22071 0.97408 0.95935 1.02096 1.21590 0.91340 0.83720 1.03845 1.42414 1.54764 1.10675 1.01735 1.19590 1.35478 0.98005 0.89386 0.88537 1.25500 0.93884 0.96626 1.00975 1.70005 1.29055 1.16898 1.34026 0.85969 0.77684 0.79767 0.81688 1.20233 1.20847 1.18965 1.20361 0.93186 0.92899 0.87010 1.21599 1.08780 1.01756 0.92677 1.21804 0.96673 0.94870 0.97962 1.23351 1.07970 0.96772 0.98089 1.72597 1.09571 1.27173 0.95591 1.73038 1.19597 1.06192 1.18072 0.93236 0.92866 0.93045 0.92384 0.91951 0.91555 0.92803 0.87210 0.93189 0.91965 0.85462 0.85753 0.83794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 37.15 0.37 -1.46 16 2 C -0.12 -1.72 5.93 -26.74 -0.16 -1.88 16 3 C -0.14 -2.41 5.35 -26.73 -0.14 -2.55 16 4 C 0.12 2.54 4.56 -4.04 -0.02 2.52 16 5 N -0.41 -10.08 2.62 -114.91 -0.30 -10.38 16 6 C -0.30 -7.89 8.87 -15.07 -0.13 -8.02 16 7 H 0.10 2.68 7.84 -52.49 -0.41 2.27 16 8 C 0.04 0.92 4.92 -17.45 -0.09 0.84 16 9 N -0.86 -22.83 11.57 55.49 0.64 -22.19 16 10 Si 0.92 20.13 29.60 -169.99 -5.03 15.10 16 11 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 12 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 13 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 14 C 0.31 7.56 7.38 -154.82 -1.14 6.42 16 15 C -0.21 -4.34 8.77 -38.96 -0.34 -4.68 16 16 C -0.09 -1.53 10.20 -39.24 -0.40 -1.93 16 17 C -0.09 -1.78 11.31 -17.32 -0.20 -1.98 16 18 N -0.20 -4.82 11.49 30.58 0.35 -4.47 16 19 N -0.31 -8.12 10.67 31.23 0.33 -7.78 16 20 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.05 0.94 7.23 -51.93 -0.38 0.56 16 27 H 0.11 2.56 5.67 -51.93 -0.29 2.26 16 28 H 0.05 1.01 6.74 -51.93 -0.35 0.66 16 29 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 30 H 0.13 2.30 6.00 -52.49 -0.31 1.98 16 31 H 0.12 1.70 8.06 -52.49 -0.42 1.27 16 32 H 0.14 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 271.22 15.07 4.09 4.09 Total: -1.00 -29.17 271.22 -6.43 -35.60 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -4.26 Total: 2.75 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -2.25 Total: -12.71 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 1.03 Total: -44.83 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.10 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.17 -6.43 -35.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132203.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.319 kcal (2) G-P(sol) polarization free energy of solvation -29.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds