Wall clock time and date at job start Sun Mar 29 2020 22:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47329 * 2 1 4 4 C 1.53004 * 109.47221 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46959 * 179.97438 * 4 3 2 6 6 C 1.36902 * 120.00125 * 95.41728 * 5 4 3 7 7 H 1.07996 * 120.00602 * 219.17989 * 6 5 4 8 8 C 1.38823 * 119.99673 * 39.18521 * 6 5 4 9 9 N 1.31560 * 120.00121 * 19.87930 * 8 6 5 10 10 Si 1.86806 * 120.00029 * 199.88436 * 8 6 5 11 11 H 1.48491 * 109.47078 * 89.99671 * 10 8 6 12 12 H 1.48504 * 109.46981 * 210.00016 * 10 8 6 13 13 H 1.48499 * 109.46672 * 329.99510 * 10 8 6 14 14 C 1.38879 * 120.00105 * 275.42377 * 5 4 3 15 15 C 1.39573 * 120.16543 * 4.71543 * 14 5 4 16 16 C 1.38567 * 117.90422 * 179.78884 * 15 14 5 17 17 C 1.38820 * 118.04536 * 0.48713 * 16 15 14 18 18 N 1.31858 * 120.03175 * 359.75016 * 17 16 15 19 19 N 1.28345 * 122.28603 * 359.97438 * 18 17 16 20 20 H 1.09004 * 109.47514 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47103 * 300.00022 * 1 2 3 22 22 H 1.09003 * 109.47477 * 59.99930 * 1 2 3 23 23 H 1.09001 * 109.47103 * 239.99978 * 2 1 3 24 24 H 1.09003 * 109.47477 * 120.00070 * 2 1 3 25 25 H 1.09001 * 109.47046 * 59.99942 * 3 2 1 26 26 H 1.09000 * 109.47324 * 300.00135 * 3 2 1 27 27 H 1.08991 * 109.47081 * 300.00129 * 4 3 2 28 28 H 1.09005 * 109.47171 * 60.00448 * 4 3 2 29 29 H 0.97008 * 120.00304 * 180.02562 * 9 8 6 30 30 H 1.08002 * 121.04787 * 0.02562 * 15 14 5 31 31 H 1.07993 * 120.97594 * 180.21678 * 16 15 14 32 32 H 1.07998 * 119.98161 * 179.77501 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.3925 3.4321 1.1787 7 1 4.1467 4.4714 1.3390 8 6 5.0476 2.7130 2.1692 9 7 5.6894 1.6062 1.8631 10 14 5.0176 3.3171 3.9366 11 1 3.8445 2.7370 4.6381 12 1 6.2642 2.8957 4.6249 13 1 4.9206 4.7988 3.9516 14 6 4.1821 3.5159 -1.1989 15 6 3.7505 2.9352 -2.3924 16 6 3.8922 3.6693 -3.5591 17 6 4.4634 4.9315 -3.4708 18 7 4.8485 5.4011 -2.3004 19 7 4.7157 4.7295 -1.2148 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8932 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9563 0.8900 26 1 1.6766 1.9564 -0.8900 27 1 3.9337 0.9285 0.8890 28 1 3.9330 0.9288 -0.8909 29 1 6.1468 1.1035 2.5553 30 1 3.3162 1.9465 -2.4057 31 1 3.5717 3.2695 -4.5097 32 1 4.5922 5.5291 -4.3611 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167132203.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:36 Heat of formation + Delta-G solvation = 36.862396 kcal Electronic energy + Delta-G solvation = -15009.250009 eV Core-core repulsion = 12583.506462 eV Total energy + Delta-G solvation = -2425.743547 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.38973 -38.60013 -35.63471 -34.20652 -33.47648 -31.53312 -29.78756 -26.88632 -25.19945 -24.48268 -22.81123 -21.88662 -19.62598 -18.13912 -17.53783 -17.06150 -16.44318 -16.17660 -15.69725 -15.32311 -14.73563 -14.69816 -13.98688 -13.62358 -13.45688 -13.27546 -13.13497 -12.87726 -12.23704 -12.12418 -11.99889 -11.80989 -11.61300 -11.51298 -11.28755 -10.83171 -10.64439 -10.02713 -8.83829 -8.29150 -5.96843 0.34065 0.68809 1.40220 1.42560 1.52217 2.24060 2.77375 2.87124 3.22256 3.96200 4.02960 4.10055 4.19812 4.25101 4.27815 4.37057 4.49839 4.61973 4.76610 4.86019 4.98929 5.04780 5.18187 5.19536 5.36567 5.39136 5.42742 5.44358 5.55903 5.71661 6.16255 6.67088 7.23956 7.60658 8.48626 8.66070 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.017219 B = 0.012698 C = 0.007965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.687602 B = 2204.542785 C = 3514.482474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.123 4.123 4 C 0.125 3.875 5 N -0.431 5.431 6 C -0.316 4.316 7 H 0.069 0.931 8 C -0.001 4.001 9 N -0.893 5.893 10 Si 0.981 3.019 11 H -0.263 1.263 12 H -0.279 1.279 13 H -0.272 1.272 14 C 0.291 3.709 15 C -0.214 4.214 16 C -0.068 4.068 17 C -0.073 4.073 18 N -0.247 5.247 19 N -0.370 5.370 20 H 0.069 0.931 21 H 0.047 0.953 22 H 0.057 0.943 23 H 0.072 0.928 24 H 0.056 0.944 25 H 0.045 0.955 26 H 0.057 0.943 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.272 0.728 30 H 0.152 0.848 31 H 0.184 0.816 32 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.258 -4.871 -6.255 11.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C -0.162 4.162 4 C 0.001 3.999 5 N -0.125 5.125 6 C -0.445 4.445 7 H 0.087 0.913 8 C -0.204 4.204 9 N -0.530 5.530 10 Si 0.805 3.195 11 H -0.188 1.188 12 H -0.204 1.204 13 H -0.197 1.197 14 C 0.047 3.953 15 C -0.249 4.249 16 C -0.096 4.096 17 C -0.245 4.245 18 N -0.088 5.088 19 N -0.226 5.226 20 H 0.088 0.912 21 H 0.066 0.934 22 H 0.076 0.924 23 H 0.091 0.909 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.103 0.897 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.169 0.831 31 H 0.201 0.799 32 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -7.495 -3.979 -5.020 9.860 hybrid contribution -0.188 -0.747 0.157 0.786 sum -7.683 -4.726 -4.863 10.248 Atomic orbital electron populations 1.21728 0.94473 1.02306 1.01767 1.21417 0.96836 0.94756 1.02307 1.21941 0.94856 0.98153 1.01209 1.21579 0.93397 0.82067 1.02818 1.42566 1.56764 1.11741 1.01412 1.19434 1.36569 0.97363 0.91181 0.91275 1.26165 0.93308 0.96836 1.04053 1.70077 1.30026 1.17895 1.34955 0.85104 0.78095 0.78724 0.77574 1.18843 1.20389 1.19693 1.20793 0.93269 0.92799 0.88463 1.21973 1.07917 1.02961 0.92028 1.22436 0.94158 0.93599 0.99379 1.24227 1.04623 0.97644 0.98054 1.72506 1.11551 1.28136 0.96599 1.72927 1.22026 1.07712 1.19943 0.91183 0.93367 0.92356 0.90893 0.92515 0.93623 0.92400 0.89689 0.92528 0.91814 0.83055 0.79881 0.79326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.91 71.98 0.71 -2.50 16 2 C -0.12 -3.11 5.93 30.59 0.18 -2.93 16 3 C -0.12 -4.30 5.35 30.60 0.16 -4.14 16 4 C 0.12 5.40 4.56 86.38 0.39 5.79 16 5 N -0.43 -22.11 2.62 -517.45 -1.35 -23.47 16 6 C -0.32 -17.73 8.87 84.04 0.75 -16.98 16 7 H 0.07 4.12 7.84 -2.91 -0.02 4.10 16 8 C 0.00 -0.05 4.92 84.87 0.42 0.37 16 9 N -0.89 -48.68 11.57 21.65 0.25 -48.43 16 10 Si 0.98 42.68 29.60 68.60 2.03 44.71 16 11 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 12 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 13 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 14 C 0.29 14.36 7.38 133.16 0.98 15.34 16 15 C -0.21 -8.22 8.77 22.67 0.20 -8.02 16 16 C -0.07 -2.13 10.20 22.49 0.23 -1.90 16 17 C -0.07 -2.58 11.31 84.83 0.96 -1.62 16 18 N -0.25 -11.53 11.49 -57.16 -0.66 -12.19 16 19 N -0.37 -19.79 10.67 -55.10 -0.59 -20.38 16 20 H 0.07 1.27 8.14 -2.38 -0.02 1.26 16 21 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.06 1.95 7.23 -2.39 -0.02 1.93 16 27 H 0.09 4.10 5.67 -2.39 -0.01 4.08 16 28 H 0.06 2.28 6.74 -2.38 -0.02 2.26 16 29 H 0.27 13.92 8.31 -92.70 -0.77 13.15 16 30 H 0.15 4.98 6.00 -2.91 -0.02 4.96 16 31 H 0.18 3.62 8.06 -2.91 -0.02 3.60 16 32 H 0.19 4.85 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -67.07 271.22 5.77 -61.30 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 1.10 Total: 15.03 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: 4.99 Total: -16.59 kcal Atomic # 7 Polarization: -102.12 SS G_CDS: -2.35 Total: -104.47 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -67.07 5.77 -61.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132203.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.166 kcal (2) G-P(sol) polarization free energy of solvation -67.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds