Wall clock time and date at job start Sun Mar 29 2020 21:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.20760 * 120.00094 * 2 1 4 4 C 1.50705 * 120.00035 * 180.02562 * 2 1 3 5 5 N 1.46495 * 109.47359 * 179.97438 * 4 2 1 6 6 C 1.37935 * 120.00038 * 179.97438 * 5 4 2 7 7 N 1.32611 * 120.23957 * 0.02562 * 6 5 4 8 8 C 1.32239 * 120.09150 * 179.97438 * 7 6 5 9 9 C 1.38975 * 120.56806 * 359.97438 * 8 7 6 10 10 N 1.31718 * 120.47247 * 0.02562 * 9 8 7 11 11 C 1.33908 * 119.89621 * 0.02562 * 10 9 8 12 12 C 1.40816 * 120.27629 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00320 * 179.97438 * 12 11 10 14 14 C 1.40118 * 120.00062 * 359.97047 * 12 11 10 15 15 N 1.30729 * 120.00035 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00103 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.46890 * 60.00244 * 16 14 12 18 18 H 1.48505 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47267 * 300.00155 * 16 14 12 20 20 H 1.08999 * 109.47202 * 239.99918 * 1 2 3 21 21 H 1.08997 * 109.47409 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47539 * 120.00239 * 1 2 3 23 23 H 1.09004 * 109.47199 * 59.99453 * 4 2 1 24 24 H 1.09004 * 109.46913 * 299.99845 * 4 2 1 25 25 H 0.97005 * 119.99837 * 0.02562 * 5 4 2 26 26 H 1.07998 * 119.72196 * 180.02562 * 8 7 6 27 27 H 1.07998 * 119.76395 * 179.72244 * 9 8 7 28 28 H 0.97003 * 120.00359 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 7 3.7008 -1.0375 -0.0011 6 6 4.5971 -2.0859 -0.0011 7 7 4.1602 -3.3380 -0.0012 8 6 5.0221 -4.3409 -0.0018 9 6 6.3903 -4.0971 -0.0028 10 7 6.8487 -2.8622 -0.0027 11 6 5.9927 -1.8325 -0.0011 12 6 6.4739 -0.5091 -0.0016 13 1 5.7796 0.3180 -0.0007 14 6 7.8538 -0.2655 -0.0030 15 7 8.6944 -1.2667 -0.0045 16 14 8.4922 1.4901 -0.0029 17 1 8.0050 2.1938 1.2105 18 1 9.9772 1.4767 -0.0053 19 1 8.0021 2.1952 -1.2144 20 1 -0.3633 -0.5138 0.8900 21 1 -0.3634 1.0276 -0.0005 22 1 -0.3634 -0.5139 -0.8899 23 1 1.9971 -1.8764 -0.8908 24 1 1.9972 -1.8771 0.8892 25 1 4.0241 -0.1229 -0.0006 26 1 4.6598 -5.3583 -0.0023 27 1 7.0827 -4.9259 0.0013 28 1 9.6496 -1.0980 -0.0059 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167628079.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:22 Heat of formation + Delta-G solvation = -10.106136 kcal Electronic energy + Delta-G solvation = -14451.067165 eV Core-core repulsion = 11887.453815 eV Total energy + Delta-G solvation = -2563.613350 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.01468 -40.32719 -36.38348 -35.85795 -33.42583 -32.18034 -30.76372 -27.96433 -27.20091 -23.91440 -23.10689 -20.80788 -19.52345 -18.58171 -17.78961 -16.95416 -16.60153 -16.21464 -15.96902 -15.75947 -15.16819 -14.62814 -14.30075 -13.88100 -13.85776 -13.24325 -13.03202 -12.98331 -12.94040 -12.37952 -11.99583 -11.71121 -11.35597 -11.24881 -10.73857 -10.45868 -9.27678 -8.65841 -8.29711 -6.36404 0.78413 0.94397 1.22329 1.39715 1.51762 1.53948 2.20839 2.55362 2.84850 3.17528 3.88945 4.14886 4.20259 4.30262 4.47738 4.52190 4.58912 4.71841 4.76379 4.93154 5.10765 5.19933 5.20748 5.80155 6.08912 6.22814 6.48418 6.65207 6.73374 6.96537 7.54713 8.06881 8.40201 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.022588 B = 0.010397 C = 0.007157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.308567 B = 2692.500804 C = 3911.363945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.353 3.647 3 O -0.500 6.500 4 C 0.084 3.916 5 N -0.722 5.722 6 C 0.252 3.748 7 N -0.505 5.505 8 C -0.079 4.079 9 C 0.008 3.992 10 N -0.484 5.484 11 C 0.159 3.841 12 C -0.450 4.450 13 H 0.089 0.911 14 C 0.024 3.976 15 N -0.753 5.753 16 Si 0.985 3.015 17 H -0.259 1.259 18 H -0.266 1.266 19 H -0.259 1.259 20 H 0.118 0.882 21 H 0.085 0.915 22 H 0.118 0.882 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.407 0.593 26 H 0.161 0.839 27 H 0.148 0.852 28 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.907 1.834 0.010 11.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.232 3.768 3 O -0.376 6.376 4 C -0.041 4.041 5 N -0.365 5.365 6 C 0.006 3.994 7 N -0.227 5.227 8 C -0.233 4.233 9 C -0.154 4.154 10 N -0.203 5.203 11 C 0.024 3.976 12 C -0.484 4.484 13 H 0.107 0.893 14 C -0.198 4.198 15 N -0.376 5.376 16 Si 0.805 3.195 17 H -0.184 1.184 18 H -0.190 1.190 19 H -0.184 1.184 20 H 0.137 0.863 21 H 0.104 0.896 22 H 0.137 0.863 23 H 0.113 0.887 24 H 0.113 0.887 25 H 0.245 0.755 26 H 0.178 0.822 27 H 0.165 0.835 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.496 2.065 0.009 10.697 hybrid contribution 0.691 0.509 0.001 0.859 sum -9.804 2.574 0.009 10.137 Atomic orbital electron populations 1.22248 0.89224 1.05943 1.07003 1.25418 0.94468 0.88651 0.68297 1.90401 1.73289 1.35936 1.37999 1.21642 0.81203 0.97041 1.04201 1.43641 1.03330 1.05929 1.83610 1.19408 0.88926 0.88094 1.03018 1.67403 1.38949 0.98143 1.18233 1.22837 0.90641 0.97517 1.12328 1.23611 0.95177 0.95969 1.00653 1.69417 1.35376 0.98063 1.17394 1.19448 0.87401 0.95004 0.95720 1.19598 0.93344 0.91337 1.44109 0.89266 1.26930 0.96728 1.03350 0.92779 1.70181 1.03769 1.34476 1.29142 0.85213 0.77765 0.76398 0.80099 1.18357 1.19001 1.18368 0.86323 0.89572 0.86329 0.88741 0.88737 0.75455 0.82167 0.83454 0.90805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.74 10.26 71.23 0.73 -2.01 15 2 C 0.35 9.41 7.33 29.10 0.21 9.62 15 3 O -0.50 -17.65 16.40 -1.45 -0.02 -17.67 15 4 C 0.08 2.64 6.11 85.64 0.52 3.17 15 5 N -0.72 -31.08 5.57 -347.12 -1.93 -33.02 15 6 C 0.25 12.76 7.51 134.04 1.01 13.77 15 7 N -0.50 -24.13 9.71 -190.82 -1.85 -25.98 15 8 C -0.08 -3.62 11.22 84.81 0.95 -2.67 15 9 C 0.01 0.39 11.21 84.89 0.95 1.34 15 10 N -0.48 -27.78 8.03 -188.05 -1.51 -29.29 15 11 C 0.16 8.98 6.56 40.35 0.26 9.24 15 12 C -0.45 -24.57 8.89 23.36 0.21 -24.36 15 13 H 0.09 4.57 6.12 -2.91 -0.02 4.55 15 14 C 0.02 1.25 5.50 85.31 0.47 1.72 15 15 N -0.75 -41.12 11.48 21.86 0.25 -40.87 15 16 Si 0.99 38.81 29.56 68.60 2.03 40.84 15 17 H -0.26 -9.93 7.11 99.48 0.71 -9.23 15 18 H -0.27 -9.88 7.11 99.48 0.71 -9.17 15 19 H -0.26 -9.94 7.11 99.48 0.71 -9.23 15 20 H 0.12 1.21 8.14 -2.39 -0.02 1.19 15 21 H 0.09 1.25 8.12 -2.39 -0.02 1.23 15 22 H 0.12 1.21 8.14 -2.39 -0.02 1.19 15 23 H 0.09 2.80 8.14 -2.38 -0.02 2.78 15 24 H 0.09 2.80 8.14 -2.39 -0.02 2.78 15 25 H 0.41 18.13 5.42 -92.70 -0.50 17.63 15 26 H 0.16 5.97 8.06 -2.91 -0.02 5.95 15 27 H 0.15 6.33 8.06 -2.91 -0.02 6.30 15 28 H 0.28 13.87 8.29 -92.71 -0.77 13.10 15 Total: -1.00 -70.06 253.31 2.96 -67.09 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.69 Total: 29.07 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 5.32 Total: 9.82 kcal Atomic # 7 Polarization: -124.12 SS G_CDS: -5.05 Total: -129.16 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.02 Total: -17.67 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Total: -70.06 2.96 -67.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167628079.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.988 kcal (2) G-P(sol) polarization free energy of solvation -70.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds