Wall clock time and date at job start Sun Mar 29 2020 21:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20757 * 120.00582 * 2 1 4 4 C 1.50701 * 119.99703 * 180.02562 * 2 1 3 5 5 N 1.46499 * 109.47283 * 179.97438 * 4 2 1 6 6 C 1.38804 * 120.00247 * 180.02562 * 5 4 2 7 7 C 1.40081 * 120.75769 * 180.02562 * 6 5 4 8 8 N 1.31668 * 119.13739 * 180.02562 * 7 6 5 9 9 C 1.33595 * 120.78831 * 359.97438 * 8 7 6 10 10 C 1.41153 * 119.16706 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00184 * 359.97438 * 10 9 8 12 12 C 1.40045 * 119.99823 * 180.02562 * 10 9 8 13 13 N 1.30730 * 120.00049 * 359.72575 * 12 10 9 14 14 Si 1.86795 * 119.99981 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47273 * 59.99791 * 14 12 10 16 16 H 1.48505 * 109.47234 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47290 * 299.99987 * 14 12 10 18 18 N 1.33599 * 121.65831 * 0.27830 * 9 8 7 19 19 C 1.31651 * 120.79256 * 359.43897 * 18 9 8 20 20 H 1.08996 * 109.47549 * 269.99915 * 1 2 3 21 21 H 1.09003 * 109.46838 * 29.99776 * 1 2 3 22 22 H 1.09006 * 109.47168 * 149.99214 * 1 2 3 23 23 H 1.08997 * 109.47018 * 60.00026 * 4 2 1 24 24 H 1.08998 * 109.47171 * 300.00232 * 4 2 1 25 25 H 0.97000 * 120.00052 * 0.02562 * 5 4 2 26 26 H 1.07995 * 120.43433 * 359.97438 * 7 6 5 27 27 H 0.97000 * 120.00283 * 180.02562 * 13 12 10 28 28 H 1.08001 * 120.43562 * 180.25207 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0457 0.0000 4 6 2.2604 -1.3052 -0.0006 5 7 3.7008 -1.0376 -0.0011 6 6 4.6027 -2.0926 -0.0022 7 6 5.9832 -1.8549 -0.0022 8 7 6.8102 -2.8795 -0.0038 9 6 6.3466 -4.1325 -0.0049 10 6 7.2638 -5.2054 -0.0060 11 1 8.3256 -5.0081 -0.0064 12 6 6.7969 -6.5257 -0.0078 13 7 5.5116 -6.7645 -0.0029 14 14 8.0107 -7.9455 -0.0086 15 1 8.8637 -7.8683 1.2045 16 1 7.2681 -9.2316 -0.0111 17 1 8.8653 -7.8656 -1.2205 18 7 5.0367 -4.3955 -0.0100 19 6 4.1533 -3.4194 -0.0030 20 1 -0.3634 0.0000 1.0276 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3634 -0.8900 -0.5140 23 1 1.9971 -1.8763 -0.8908 24 1 1.9971 -1.8771 0.8891 25 1 4.0242 -0.1231 -0.0006 26 1 6.3643 -0.8445 -0.0017 27 1 5.1882 -7.6790 -0.0038 28 1 3.0958 -3.6386 -0.0031 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167630386.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:26 Heat of formation + Delta-G solvation = 15.589568 kcal Electronic energy + Delta-G solvation = -14105.278801 eV Core-core repulsion = 11542.779701 eV Total energy + Delta-G solvation = -2562.499100 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.63883 -38.80627 -35.16297 -33.34365 -31.70671 -31.04893 -29.26565 -26.84621 -24.61306 -22.89214 -21.16404 -19.73438 -17.80897 -16.92055 -16.00375 -15.57879 -15.34789 -14.76290 -14.57130 -14.28162 -13.54756 -13.30962 -12.71801 -12.62548 -12.45064 -12.17881 -11.85178 -11.20537 -11.18787 -10.56577 -10.23931 -9.88163 -9.80249 -9.37402 -9.17904 -8.92226 -7.26308 -6.80118 -6.40524 -4.37289 1.84886 2.74802 2.91710 3.12537 3.16189 3.21886 3.79417 3.99930 4.37681 4.76916 4.88901 5.15739 5.28130 5.54428 5.58761 5.74725 5.80280 5.93235 6.00353 6.27069 6.46532 7.09063 7.14126 7.33650 7.41931 8.10817 8.28337 8.51471 8.57647 8.75008 9.21811 10.24205 10.40072 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.066349 B = 0.005817 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.912202 B = 4811.960126 C = 5213.425136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.350 3.650 3 O -0.459 6.459 4 C 0.086 3.914 5 N -0.748 5.748 6 C -0.042 4.042 7 C 0.106 3.894 8 N -0.566 5.566 9 C 0.369 3.631 10 C -0.413 4.413 11 H 0.088 0.912 12 C 0.068 3.932 13 N -0.726 5.726 14 Si 0.915 3.085 15 H -0.265 1.265 16 H -0.278 1.278 17 H -0.265 1.265 18 N -0.476 5.476 19 C 0.099 3.901 20 H 0.096 0.904 21 H 0.084 0.916 22 H 0.088 0.912 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.394 0.606 26 H 0.127 0.873 27 H 0.272 0.728 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.389 5.384 0.064 10.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.226 3.774 3 O -0.333 6.333 4 C -0.041 4.041 5 N -0.389 5.389 6 C -0.146 4.146 7 C -0.068 4.068 8 N -0.284 5.284 9 C 0.128 3.872 10 C -0.450 4.450 11 H 0.107 0.893 12 C -0.156 4.156 13 N -0.350 5.350 14 Si 0.740 3.260 15 H -0.189 1.189 16 H -0.203 1.203 17 H -0.190 1.190 18 N -0.193 5.193 19 C -0.077 4.077 20 H 0.115 0.885 21 H 0.103 0.897 22 H 0.107 0.893 23 H 0.101 0.899 24 H 0.101 0.899 25 H 0.230 0.770 26 H 0.145 0.855 27 H 0.083 0.917 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.676 4.817 0.057 9.924 hybrid contribution -0.293 0.383 0.009 0.482 sum -8.970 5.200 0.066 10.368 Atomic orbital electron populations 1.22247 0.93903 1.04938 1.04790 1.24888 0.92242 0.90355 0.69902 1.90381 1.71956 1.35034 1.35893 1.21414 0.84035 0.95760 1.02885 1.43334 1.01315 1.06441 1.87769 1.19177 0.91152 0.89723 1.14558 1.22208 0.87776 0.97749 0.99085 1.68574 1.38497 1.00013 1.21365 1.19808 0.87923 0.88399 0.91056 1.19064 0.93829 0.88286 1.43825 0.89344 1.26002 0.95725 1.00258 0.93651 1.70132 1.13719 1.21139 1.30007 0.86267 0.80678 0.79183 0.79917 1.18950 1.20340 1.18954 1.69267 1.02315 1.31790 1.15880 1.22682 0.99213 0.87046 0.98806 0.88514 0.89695 0.89317 0.89881 0.89872 0.77012 0.85536 0.91702 0.85651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.48 10.25 36.01 0.37 -1.11 15 2 C 0.35 4.11 7.33 -29.03 -0.21 3.90 15 3 O -0.46 -7.02 16.41 6.00 0.10 -6.92 15 4 C 0.09 1.14 5.34 -5.19 -0.03 1.11 15 5 N -0.75 -13.14 5.68 -59.41 -0.34 -13.48 15 6 C -0.04 -0.91 6.72 -83.32 -0.56 -1.47 15 7 C 0.11 2.50 11.20 -16.93 -0.19 2.31 15 8 N -0.57 -15.37 10.34 -12.49 -0.13 -15.50 15 9 C 0.37 10.65 7.35 -158.23 -1.16 9.49 15 10 C -0.41 -11.65 9.35 -37.80 -0.35 -12.00 15 11 H 0.09 2.40 7.85 -52.49 -0.41 1.99 15 12 C 0.07 1.78 5.50 -17.34 -0.10 1.69 15 13 N -0.73 -19.47 11.41 55.55 0.63 -18.83 15 14 Si 0.92 19.08 29.56 -169.99 -5.02 14.05 15 15 H -0.26 -5.45 7.11 56.52 0.40 -5.05 15 16 H -0.28 -5.59 7.11 56.52 0.40 -5.18 15 17 H -0.26 -5.45 7.11 56.52 0.40 -5.05 15 18 N -0.48 -13.24 7.84 -12.49 -0.10 -13.33 15 19 C 0.10 2.34 10.58 -16.94 -0.18 2.17 15 20 H 0.10 0.58 8.14 -51.93 -0.42 0.16 15 21 H 0.08 0.60 8.14 -51.93 -0.42 0.18 15 22 H 0.09 0.49 8.12 -51.93 -0.42 0.07 15 23 H 0.08 1.03 7.98 -51.93 -0.41 0.62 15 24 H 0.08 1.03 7.99 -51.93 -0.41 0.62 15 25 H 0.39 6.80 7.47 -40.82 -0.30 6.49 15 26 H 0.13 2.56 8.06 -52.49 -0.42 2.14 15 27 H 0.27 6.59 8.29 -40.82 -0.34 6.25 15 28 H 0.13 2.54 6.88 -52.49 -0.36 2.18 15 LS Contribution 255.11 15.07 3.84 3.84 Total: -1.00 -32.51 255.11 -6.16 -38.67 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -2.73 Total: 5.41 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: -2.41 Total: 6.08 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: 0.07 Total: -61.14 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: 0.10 Total: -6.92 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.05 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -32.51 -6.16 -38.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167630386.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.256 kcal (2) G-P(sol) polarization free energy of solvation -32.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds