Wall clock time and date at job start Sun Mar 29 2020 21:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20757 * 120.00582 * 2 1 4 4 C 1.50701 * 119.99703 * 180.02562 * 2 1 3 5 5 N 1.46499 * 109.47283 * 179.97438 * 4 2 1 6 6 C 1.38804 * 120.00247 * 180.02562 * 5 4 2 7 7 C 1.40081 * 120.75769 * 180.02562 * 6 5 4 8 8 N 1.31668 * 119.13739 * 180.02562 * 7 6 5 9 9 C 1.33595 * 120.78831 * 359.97438 * 8 7 6 10 10 C 1.41153 * 119.16706 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00184 * 359.97438 * 10 9 8 12 12 C 1.40045 * 119.99823 * 180.02562 * 10 9 8 13 13 N 1.30730 * 120.00049 * 359.72575 * 12 10 9 14 14 Si 1.86795 * 119.99981 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47273 * 59.99791 * 14 12 10 16 16 H 1.48505 * 109.47234 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47290 * 299.99987 * 14 12 10 18 18 N 1.33599 * 121.65831 * 0.27830 * 9 8 7 19 19 C 1.31651 * 120.79256 * 359.43897 * 18 9 8 20 20 H 1.08996 * 109.47549 * 269.99915 * 1 2 3 21 21 H 1.09003 * 109.46838 * 29.99776 * 1 2 3 22 22 H 1.09006 * 109.47168 * 149.99214 * 1 2 3 23 23 H 1.08997 * 109.47018 * 60.00026 * 4 2 1 24 24 H 1.08998 * 109.47171 * 300.00232 * 4 2 1 25 25 H 0.97000 * 120.00052 * 0.02562 * 5 4 2 26 26 H 1.07995 * 120.43433 * 359.97438 * 7 6 5 27 27 H 0.97000 * 120.00283 * 180.02562 * 13 12 10 28 28 H 1.08001 * 120.43562 * 180.25207 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0457 0.0000 4 6 2.2604 -1.3052 -0.0006 5 7 3.7008 -1.0376 -0.0011 6 6 4.6027 -2.0926 -0.0022 7 6 5.9832 -1.8549 -0.0022 8 7 6.8102 -2.8795 -0.0038 9 6 6.3466 -4.1325 -0.0049 10 6 7.2638 -5.2054 -0.0060 11 1 8.3256 -5.0081 -0.0064 12 6 6.7969 -6.5257 -0.0078 13 7 5.5116 -6.7645 -0.0029 14 14 8.0107 -7.9455 -0.0086 15 1 8.8637 -7.8683 1.2045 16 1 7.2681 -9.2316 -0.0111 17 1 8.8653 -7.8656 -1.2205 18 7 5.0367 -4.3955 -0.0100 19 6 4.1533 -3.4194 -0.0030 20 1 -0.3634 0.0000 1.0276 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3634 -0.8900 -0.5140 23 1 1.9971 -1.8763 -0.8908 24 1 1.9971 -1.8771 0.8891 25 1 4.0242 -0.1231 -0.0006 26 1 6.3643 -0.8445 -0.0017 27 1 5.1882 -7.6790 -0.0038 28 1 3.0958 -3.6386 -0.0031 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167630386.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:25 Heat of formation + Delta-G solvation = -7.863713 kcal Electronic energy + Delta-G solvation = -14106.295811 eV Core-core repulsion = 11542.779701 eV Total energy + Delta-G solvation = -2563.516111 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.01935 -40.37374 -36.75621 -35.19412 -33.66711 -32.10604 -30.80842 -28.36075 -26.25669 -24.73041 -22.97861 -20.79855 -19.72890 -18.41905 -17.50407 -17.13016 -16.58254 -16.28723 -16.04252 -15.74288 -15.11737 -14.66165 -14.40057 -14.07294 -13.59442 -13.05367 -12.99489 -12.98032 -12.84830 -12.54000 -11.94100 -11.56203 -11.36584 -11.16214 -10.74830 -10.72568 -9.23400 -8.54683 -8.31306 -6.34119 0.87252 0.92517 1.01021 1.44093 1.56876 1.57149 2.28020 2.62738 2.85317 3.19832 3.97430 4.02220 4.10012 4.16565 4.33848 4.45840 4.46905 4.69063 4.71645 4.75064 5.17882 5.19073 5.32157 5.54409 6.23903 6.39506 6.54503 6.58003 6.79324 6.96421 7.30736 8.28931 8.50977 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.066349 B = 0.005817 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.912202 B = 4811.960126 C = 5213.425136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.359 3.641 3 O -0.500 6.500 4 C 0.072 3.928 5 N -0.743 5.743 6 C -0.010 4.010 7 C 0.083 3.917 8 N -0.591 5.591 9 C 0.337 3.663 10 C -0.458 4.458 11 H 0.081 0.919 12 C 0.027 3.973 13 N -0.760 5.760 14 Si 0.994 3.006 15 H -0.261 1.261 16 H -0.263 1.263 17 H -0.262 1.262 18 N -0.504 5.504 19 C 0.082 3.918 20 H 0.116 0.884 21 H 0.089 0.911 22 H 0.112 0.888 23 H 0.100 0.900 24 H 0.100 0.900 25 H 0.397 0.603 26 H 0.155 0.845 27 H 0.280 0.720 28 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.044 5.382 0.090 12.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.238 3.762 3 O -0.377 6.377 4 C -0.053 4.053 5 N -0.382 5.382 6 C -0.117 4.117 7 C -0.090 4.090 8 N -0.310 5.310 9 C 0.094 3.906 10 C -0.495 4.495 11 H 0.099 0.901 12 C -0.195 4.195 13 N -0.385 5.385 14 Si 0.814 3.186 15 H -0.186 1.186 16 H -0.187 1.187 17 H -0.186 1.186 18 N -0.221 5.221 19 C -0.094 4.094 20 H 0.134 0.866 21 H 0.108 0.892 22 H 0.131 0.869 23 H 0.118 0.882 24 H 0.118 0.882 25 H 0.233 0.767 26 H 0.173 0.827 27 H 0.091 0.909 28 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.406 4.877 0.083 11.493 hybrid contribution 0.052 0.607 0.002 0.609 sum -10.354 5.484 0.085 11.717 Atomic orbital electron populations 1.22248 0.89796 1.06412 1.06407 1.25271 0.94138 0.88699 0.68127 1.90388 1.73105 1.36027 1.38175 1.21833 0.81455 0.97672 1.04388 1.43480 1.02881 1.05483 1.86345 1.19173 0.91353 0.90361 1.10778 1.22740 0.88674 0.98255 0.99380 1.68549 1.39832 1.00377 1.22256 1.20132 0.88775 0.89168 0.92525 1.19338 0.93640 0.89866 1.46643 0.90109 1.26882 0.97808 1.02231 0.92561 1.70193 1.15480 1.22261 1.30540 0.85098 0.77984 0.75642 0.79883 1.18588 1.18650 1.18591 1.69203 1.02427 1.33561 1.16914 1.23203 1.00213 0.87188 0.98816 0.86567 0.89191 0.86893 0.88231 0.88200 0.76673 0.82738 0.90916 0.82418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.05 10.25 71.24 0.73 -1.32 15 2 C 0.36 7.40 7.33 29.10 0.21 7.61 15 3 O -0.50 -14.40 16.41 -1.44 -0.02 -14.43 15 4 C 0.07 1.69 5.34 85.63 0.46 2.15 15 5 N -0.74 -24.60 5.68 -341.86 -1.94 -26.54 15 6 C -0.01 -0.44 6.72 38.93 0.26 -0.18 15 7 C 0.08 3.89 11.20 85.16 0.95 4.84 15 8 N -0.59 -32.88 10.34 -193.42 -2.00 -34.88 15 9 C 0.34 20.03 7.35 134.95 0.99 21.03 15 10 C -0.46 -26.73 9.35 23.42 0.22 -26.51 15 11 H 0.08 4.61 7.85 -2.91 -0.02 4.58 15 12 C 0.03 1.41 5.50 85.30 0.47 1.88 15 13 N -0.76 -41.32 11.41 21.84 0.25 -41.07 15 14 Si 0.99 39.50 29.56 68.60 2.03 41.53 15 15 H -0.26 -10.13 7.11 99.48 0.71 -9.42 15 16 H -0.26 -9.62 7.11 99.48 0.71 -8.91 15 17 H -0.26 -10.13 7.11 99.48 0.71 -9.42 15 18 N -0.50 -28.46 7.84 -193.43 -1.52 -29.97 15 19 C 0.08 3.79 10.58 85.17 0.90 4.69 15 20 H 0.12 0.89 8.14 -2.39 -0.02 0.87 15 21 H 0.09 0.96 8.14 -2.39 -0.02 0.94 15 22 H 0.11 0.71 8.12 -2.38 -0.02 0.69 15 23 H 0.10 2.12 7.98 -2.39 -0.02 2.10 15 24 H 0.10 2.12 7.99 -2.39 -0.02 2.10 15 25 H 0.40 13.00 7.47 -92.71 -0.69 12.31 15 26 H 0.16 6.15 8.06 -2.91 -0.02 6.12 15 27 H 0.28 13.62 8.29 -92.71 -0.77 12.85 15 28 H 0.16 6.06 6.88 -2.91 -0.02 6.04 15 Total: -1.00 -72.82 255.11 2.49 -70.33 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.50 Total: 20.85 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: 5.20 Total: 14.19 kcal Atomic # 7 Polarization: -127.26 SS G_CDS: -5.21 Total: -132.46 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.02 Total: -14.43 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -72.82 2.49 -70.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167630386.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.465 kcal (2) G-P(sol) polarization free energy of solvation -72.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds