Wall clock time and date at job start Sun Mar 29 2020 21:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35599 * 117.00533 * 2 1 4 4 C 1.39141 * 120.50550 * 0.23247 * 3 2 1 5 5 C 1.38338 * 118.62103 * 180.27237 * 4 3 2 6 6 C 1.39863 * 119.60070 * 359.74102 * 5 4 3 7 7 N 1.39172 * 119.49492 * 179.97438 * 6 5 4 8 8 C 1.37244 * 120.00585 * 174.63876 * 7 6 5 9 9 N 1.29306 * 119.99850 * 5.29616 * 8 7 6 10 10 N 1.31859 * 121.01688 * 0.02562 * 6 5 4 11 11 C 1.33791 * 121.48056 * 0.02562 * 10 6 5 12 12 C 1.40934 * 119.84730 * 179.97438 * 11 10 6 13 13 H 1.08000 * 119.99606 * 185.27870 * 12 11 10 14 14 C 1.40017 * 120.00103 * 5.01061 * 12 11 10 15 15 N 1.30775 * 120.00303 * 354.99534 * 14 12 11 16 16 Si 1.86799 * 119.99821 * 175.00077 * 14 12 11 17 17 H 1.48499 * 109.47159 * 94.99658 * 16 14 12 18 18 H 1.48500 * 109.47282 * 214.99545 * 16 14 12 19 19 H 1.48502 * 109.47167 * 334.99383 * 16 14 12 20 20 H 1.08998 * 109.47496 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47045 * 300.00028 * 1 2 3 22 22 H 1.08999 * 109.47090 * 60.00301 * 1 2 3 23 23 H 1.08004 * 120.69083 * 359.97438 * 4 3 2 24 24 H 1.08000 * 120.20251 * 179.72459 * 5 4 3 25 25 H 0.97011 * 119.99965 * 354.63355 * 7 6 5 26 26 H 1.08002 * 120.00071 * 185.29615 * 8 7 6 27 27 H 0.96998 * 120.00153 * 179.97438 * 9 8 7 28 28 H 0.96997 * 120.00337 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2081 0.0000 4 6 1.2973 2.3818 0.0049 5 6 1.9656 3.5930 -0.0011 6 6 3.3641 3.6104 -0.0063 7 7 4.0342 4.8301 -0.0128 8 6 5.4022 4.8623 0.0931 9 7 6.0765 3.7590 0.0958 10 7 4.0576 2.4888 -0.0061 11 6 3.4546 1.2946 -0.0014 12 6 4.2296 0.1175 -0.0019 13 1 3.7483 -0.8459 -0.0843 14 6 5.6239 0.1972 0.0987 15 7 6.2141 1.3642 0.0944 16 14 6.6409 -1.3634 0.2387 17 1 7.1158 -1.7673 -1.1090 18 1 7.8091 -1.1154 1.1214 19 1 5.8064 -2.4480 0.8152 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 0.2178 2.3479 0.0083 24 1 1.4109 4.5196 -0.0020 25 1 3.5344 5.6577 -0.0923 26 1 5.9155 5.8091 0.1742 27 1 7.0434 3.7817 0.1703 28 1 7.1800 1.4194 0.1645 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167866072.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:34 Heat of formation + Delta-G solvation = 47.437820 kcal Electronic energy + Delta-G solvation = -14961.208760 eV Core-core repulsion = 12400.090703 eV Total energy + Delta-G solvation = -2561.118056 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.57947 -38.86488 -36.92020 -35.25412 -32.87959 -31.97746 -30.32543 -27.93077 -26.97732 -23.71911 -23.10271 -21.11919 -19.57743 -18.33425 -18.07855 -17.31988 -16.21222 -16.17422 -15.93427 -15.36750 -14.67818 -14.53209 -14.44253 -13.91467 -13.21448 -13.08420 -12.78942 -12.66206 -12.36066 -12.04609 -11.65303 -11.49317 -11.07261 -9.86880 -9.82757 -9.62185 -8.46092 -8.08552 -7.85952 -6.12138 1.07134 1.33928 1.46244 1.54900 1.59862 2.36399 2.43858 2.70221 3.10862 3.13661 4.13764 4.32169 4.43068 4.49689 4.54527 4.71936 4.77579 4.83473 5.01819 5.14939 5.51994 5.67458 5.86600 6.08842 6.34078 6.56422 6.88348 6.97581 7.03683 7.42947 8.22315 8.54672 8.70173 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.019158 B = 0.016000 C = 0.008764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.183872 B = 1749.632295 C = 3194.223954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.340 6.340 3 C -0.102 4.102 4 C -0.120 4.120 5 C -0.339 4.339 6 C 0.338 3.662 7 N -0.644 5.644 8 C 0.313 3.687 9 N -0.661 5.661 10 N -0.462 5.462 11 C 0.230 3.770 12 C -0.450 4.450 13 H 0.073 0.927 14 C 0.012 3.988 15 N -0.658 5.658 16 Si 0.966 3.034 17 H -0.269 1.269 18 H -0.268 1.268 19 H -0.268 1.268 20 H 0.109 0.891 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.130 0.870 24 H 0.125 0.875 25 H 0.426 0.574 26 H 0.145 0.855 27 H 0.325 0.675 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.590 5.164 0.287 5.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.255 6.255 3 C -0.150 4.150 4 C -0.145 4.145 5 C -0.365 4.365 6 C 0.099 3.901 7 N -0.280 5.280 8 C 0.007 3.993 9 N -0.285 5.285 10 N -0.182 5.182 11 C 0.102 3.898 12 C -0.481 4.481 13 H 0.091 0.909 14 C -0.215 4.215 15 N -0.277 5.277 16 Si 0.788 3.212 17 H -0.194 1.194 18 H -0.193 1.193 19 H -0.193 1.193 20 H 0.127 0.873 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.148 0.852 24 H 0.143 0.857 25 H 0.264 0.736 26 H 0.161 0.839 27 H 0.141 0.859 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.542 4.082 0.244 4.371 hybrid contribution -0.346 0.600 0.109 0.701 sum -1.888 4.683 0.354 5.061 Atomic orbital electron populations 1.23005 0.79321 1.03839 1.00536 1.85859 1.20938 1.27679 1.90994 1.20302 0.93580 0.84493 1.16594 1.20991 0.98772 0.91688 1.03017 1.20719 0.92531 0.97701 1.25545 1.19185 0.88283 0.88171 0.94471 1.41860 1.04723 1.05427 1.75952 1.23321 0.85815 0.95035 0.95122 1.70067 1.11786 1.28643 1.18016 1.69026 1.33465 0.94687 1.21064 1.18562 0.86470 0.92652 0.92138 1.19569 0.92254 0.92607 1.43702 0.90909 1.26901 0.99145 1.00114 0.95320 1.70806 1.09669 1.23264 1.23977 0.85453 0.77966 0.79088 0.78679 1.19417 1.19286 1.19284 0.87305 0.93458 0.93451 0.85183 0.85664 0.73609 0.83893 0.85933 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 9.83 113.37 1.11 2.09 15 2 O -0.34 -16.73 9.62 -89.09 -0.86 -17.59 15 3 C -0.10 -5.43 6.74 23.23 0.16 -5.27 15 4 C -0.12 -5.55 9.12 22.51 0.21 -5.35 15 5 C -0.34 -15.10 9.94 22.69 0.23 -14.87 15 6 C 0.34 16.44 7.44 133.34 0.99 17.43 15 7 N -0.64 -23.96 5.48 -195.37 -1.07 -25.03 15 8 C 0.31 11.20 12.57 179.89 2.26 13.46 15 9 N -0.66 -29.29 8.42 -59.54 -0.50 -29.79 15 10 N -0.46 -26.27 5.67 -186.03 -1.06 -27.33 15 11 C 0.23 13.64 6.56 40.25 0.26 13.91 15 12 C -0.45 -26.57 8.93 23.36 0.21 -26.36 15 13 H 0.07 4.28 7.33 -2.91 -0.02 4.26 15 14 C 0.01 0.63 5.49 85.28 0.47 1.10 15 15 N -0.66 -35.48 8.53 21.84 0.19 -35.29 15 16 Si 0.97 40.93 29.56 68.60 2.03 42.96 15 17 H -0.27 -11.05 7.11 99.48 0.71 -10.34 15 18 H -0.27 -10.71 7.11 99.48 0.71 -10.00 15 19 H -0.27 -11.43 7.11 99.48 0.71 -10.72 15 20 H 0.11 3.02 8.14 -2.39 -0.02 3.00 15 21 H 0.05 1.50 7.68 -2.39 -0.02 1.49 15 22 H 0.05 1.50 7.70 -2.39 -0.02 1.49 15 23 H 0.13 5.01 6.44 -2.91 -0.02 4.99 15 24 H 0.13 4.55 8.06 -2.91 -0.02 4.53 15 25 H 0.43 11.63 8.81 -92.70 -0.82 10.81 15 26 H 0.15 3.42 8.06 -2.91 -0.02 3.39 15 27 H 0.32 12.88 8.84 -92.71 -0.82 12.06 15 28 H 0.27 13.10 8.24 -92.71 -0.76 12.34 15 Total: -1.00 -72.85 244.50 4.20 -68.64 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: -0.42 Total: 27.29 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 5.90 Total: -3.87 kcal Atomic # 7 Polarization: -115.00 SS G_CDS: -2.44 Total: -117.44 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.86 Total: -17.59 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -72.85 4.20 -68.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167866072.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.080 kcal (2) G-P(sol) polarization free energy of solvation -72.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds