Wall clock time and date at job start Sun Mar 29 2020 22:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47385 * 2 1 4 4 H 1.08997 * 109.47342 * 55.00701 * 3 2 1 5 5 C 1.53010 * 109.46722 * 175.00253 * 3 2 1 6 6 N 1.46497 * 109.47078 * 294.99640 * 3 2 1 7 7 C 1.38806 * 119.99854 * 155.00012 * 6 3 2 8 8 C 1.40080 * 120.76032 * 180.02562 * 7 6 3 9 9 N 1.31663 * 119.13804 * 180.02562 * 8 7 6 10 10 C 1.33592 * 120.79253 * 359.97438 * 9 8 7 11 11 C 1.41148 * 119.17350 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99476 * 359.72249 * 11 10 9 13 13 C 1.40045 * 120.00233 * 179.97438 * 11 10 9 14 14 N 1.30722 * 119.99700 * 359.72689 * 13 11 10 15 15 Si 1.86798 * 119.99794 * 179.72744 * 13 11 10 16 16 H 1.48498 * 109.47416 * 59.99902 * 15 13 11 17 17 H 1.48508 * 109.46609 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46903 * 299.99487 * 15 13 11 19 19 N 1.33608 * 121.65768 * 0.25252 * 10 9 8 20 20 C 1.31661 * 120.78778 * 359.48116 * 19 10 9 21 21 H 1.09003 * 109.47197 * 300.00271 * 1 2 3 22 22 H 1.09006 * 109.47415 * 59.99433 * 1 2 3 23 23 H 1.08998 * 109.47935 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47197 * 239.99729 * 2 1 3 25 25 H 1.09005 * 109.46891 * 120.00539 * 2 1 3 26 26 H 1.08995 * 109.46936 * 299.99431 * 5 3 2 27 27 H 1.08989 * 109.47134 * 60.00161 * 5 3 2 28 28 H 1.09007 * 109.46559 * 180.02562 * 5 3 2 29 29 H 0.97000 * 120.00602 * 335.00378 * 6 3 2 30 30 H 1.08004 * 120.43171 * 0.03472 * 8 7 6 31 31 H 0.97000 * 120.00057 * 180.02562 * 14 13 11 32 32 H 1.07999 * 120.42799 * 180.24890 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5649 1.4441 0.1257 6 7 1.6525 2.0974 -1.2518 7 6 1.5220 3.4784 -1.3010 8 6 1.1518 4.1212 -2.4893 9 7 1.0379 5.4328 -2.5001 10 6 1.2701 6.1486 -1.3963 11 6 1.1385 7.5530 -1.4465 12 1 0.8576 8.0362 -2.3706 13 6 1.3772 8.3202 -0.2995 14 7 1.7167 7.7352 0.8191 15 14 1.2103 10.1795 -0.3681 16 1 -0.1772 10.5380 -0.7571 17 1 1.5145 10.7532 0.9675 18 1 2.1618 10.7252 -1.3691 19 7 1.6291 5.5689 -0.2473 20 6 1.7568 4.2612 -0.1633 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3635 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8932 -0.5139 0.8900 26 1 3.8532 0.9568 1.0570 27 1 3.9994 0.9051 -0.7161 28 1 3.9283 2.4718 0.1261 29 1 1.4871 1.5661 -2.0463 30 1 0.9622 3.5483 -3.3850 31 1 1.8817 8.2665 1.6137 32 1 2.0434 3.7984 0.7695 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167998104.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:59 Heat of formation + Delta-G solvation = 38.080366 kcal Electronic energy + Delta-G solvation = -14736.743078 eV Core-core repulsion = 12311.052346 eV Total energy + Delta-G solvation = -2425.690731 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.03259 -36.94141 -33.68041 -32.28742 -31.65425 -29.74428 -28.35155 -25.29750 -23.42909 -23.02589 -21.45034 -20.02637 -17.74862 -16.44035 -15.99179 -15.14179 -14.49078 -14.25398 -13.83185 -13.45901 -13.27022 -12.98032 -12.56406 -12.23482 -11.86818 -11.52345 -11.25517 -11.17023 -11.10384 -10.90273 -10.56302 -10.43201 -10.17073 -9.75363 -9.31524 -9.12261 -8.85288 -7.20664 -6.70481 -6.35510 -4.31409 2.80608 2.96793 3.14914 3.18492 3.25165 4.03074 4.27469 4.81578 4.92569 5.20250 5.25125 5.59828 5.73853 5.81660 5.84958 5.93224 5.97371 6.03681 6.05907 6.08652 6.29258 6.34406 6.35675 6.55096 6.57492 7.14944 7.22841 7.45250 8.23946 8.32765 8.59874 8.63415 8.80074 9.27697 10.29661 10.45307 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.051061 B = 0.006537 C = 0.006237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.229548 B = 4281.992649 C = 4487.901945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.158 3.842 4 H 0.070 0.930 5 C -0.168 4.168 6 N -0.744 5.744 7 C -0.034 4.034 8 C 0.099 3.901 9 N -0.567 5.567 10 C 0.369 3.631 11 C -0.416 4.416 12 H 0.087 0.913 13 C 0.069 3.931 14 N -0.728 5.728 15 Si 0.914 3.086 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.265 1.265 19 N -0.475 5.475 20 C 0.099 3.901 21 H 0.053 0.947 22 H 0.059 0.941 23 H 0.047 0.953 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.383 0.617 30 H 0.125 0.875 31 H 0.271 0.729 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.602 -10.472 1.027 10.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C 0.051 3.949 4 H 0.088 0.912 5 C -0.227 4.227 6 N -0.381 5.381 7 C -0.139 4.139 8 C -0.076 4.076 9 N -0.286 5.286 10 C 0.127 3.873 11 C -0.453 4.453 12 H 0.105 0.895 13 C -0.156 4.156 14 N -0.352 5.352 15 Si 0.739 3.261 16 H -0.190 1.190 17 H -0.204 1.204 18 H -0.190 1.190 19 N -0.192 5.192 20 C -0.078 4.078 21 H 0.072 0.928 22 H 0.078 0.922 23 H 0.066 0.934 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.216 0.784 30 H 0.142 0.858 31 H 0.082 0.918 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.607 -9.344 1.410 9.469 hybrid contribution 0.054 -0.509 -0.202 0.551 sum 0.661 -9.853 1.209 9.949 Atomic orbital electron populations 1.21728 0.95604 1.00742 1.02568 1.21776 0.96360 0.96465 1.01946 1.20638 0.93432 0.92151 0.88714 0.91182 1.22314 0.97305 1.02349 1.00701 1.43640 1.80966 1.02843 1.10650 1.19199 1.12137 0.84665 0.97901 1.22171 0.99238 0.91492 0.94660 1.68535 1.22726 1.05654 1.31658 1.19797 0.90623 0.94455 0.82432 1.19033 1.40711 0.88479 0.97075 0.89464 1.25987 0.93747 1.00917 0.94910 1.70136 1.28330 1.36664 1.00041 0.86289 0.79803 0.81936 0.78118 1.18990 1.20372 1.19001 1.69283 1.15618 1.07439 1.26844 1.22715 0.98801 0.91009 0.95265 0.92816 0.92217 0.93382 0.92044 0.91399 0.92869 0.93049 0.92174 0.78403 0.85792 0.91773 0.85694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.80 37.15 0.36 -1.33 16 2 C -0.13 -1.41 5.47 -26.74 -0.15 -1.56 16 3 C 0.16 2.23 2.28 -67.93 -0.15 2.07 16 4 H 0.07 1.10 6.53 -51.93 -0.34 0.76 16 5 C -0.17 -2.28 9.47 37.16 0.35 -1.93 16 6 N -0.74 -12.28 4.68 -51.77 -0.24 -12.52 16 7 C -0.03 -0.74 6.70 -83.32 -0.56 -1.29 16 8 C 0.10 2.28 11.20 -16.93 -0.19 2.09 16 9 N -0.57 -15.39 10.34 -12.49 -0.13 -15.52 16 10 C 0.37 10.73 7.35 -158.22 -1.16 9.57 16 11 C -0.42 -11.86 9.35 -37.80 -0.35 -12.22 16 12 H 0.09 2.40 7.85 -52.49 -0.41 1.99 16 13 C 0.07 1.82 5.50 -17.35 -0.10 1.73 16 14 N -0.73 -19.90 11.41 55.55 0.63 -19.27 16 15 Si 0.91 19.36 29.56 -169.99 -5.02 14.34 16 16 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 17 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 18 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 19 N -0.48 -13.44 7.84 -12.49 -0.10 -13.54 16 20 C 0.10 2.39 10.14 -16.93 -0.17 2.21 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.06 0.75 7.75 -51.93 -0.40 0.34 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.66 8.14 -51.94 -0.42 0.24 16 28 H 0.06 0.97 7.80 -51.93 -0.41 0.56 16 29 H 0.38 5.60 8.63 -40.82 -0.35 5.25 16 30 H 0.12 2.43 8.06 -52.48 -0.42 2.00 16 31 H 0.27 6.72 8.29 -40.82 -0.34 6.38 16 32 H 0.13 2.73 6.34 -52.49 -0.33 2.40 16 LS Contribution 272.50 15.07 4.11 4.11 Total: -1.00 -30.59 272.50 -7.21 -37.80 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -4.34 Total: 5.26 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -2.12 Total: -0.65 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: 0.16 Total: -60.85 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.59 -7.21 -37.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167998104.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.878 kcal (2) G-P(sol) polarization free energy of solvation -30.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds