Wall clock time and date at job start Sun Mar 29 2020 22:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47385 * 2 1 4 4 H 1.08997 * 109.47342 * 55.00701 * 3 2 1 5 5 C 1.53010 * 109.46722 * 175.00253 * 3 2 1 6 6 N 1.46497 * 109.47078 * 294.99640 * 3 2 1 7 7 C 1.38806 * 119.99854 * 155.00012 * 6 3 2 8 8 C 1.40080 * 120.76032 * 180.02562 * 7 6 3 9 9 N 1.31663 * 119.13804 * 180.02562 * 8 7 6 10 10 C 1.33592 * 120.79253 * 359.97438 * 9 8 7 11 11 C 1.41148 * 119.17350 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99476 * 359.72249 * 11 10 9 13 13 C 1.40045 * 120.00233 * 179.97438 * 11 10 9 14 14 N 1.30722 * 119.99700 * 359.72689 * 13 11 10 15 15 Si 1.86798 * 119.99794 * 179.72744 * 13 11 10 16 16 H 1.48498 * 109.47416 * 59.99902 * 15 13 11 17 17 H 1.48508 * 109.46609 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46903 * 299.99487 * 15 13 11 19 19 N 1.33608 * 121.65768 * 0.25252 * 10 9 8 20 20 C 1.31661 * 120.78778 * 359.48116 * 19 10 9 21 21 H 1.09003 * 109.47197 * 300.00271 * 1 2 3 22 22 H 1.09006 * 109.47415 * 59.99433 * 1 2 3 23 23 H 1.08998 * 109.47935 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47197 * 239.99729 * 2 1 3 25 25 H 1.09005 * 109.46891 * 120.00539 * 2 1 3 26 26 H 1.08995 * 109.46936 * 299.99431 * 5 3 2 27 27 H 1.08989 * 109.47134 * 60.00161 * 5 3 2 28 28 H 1.09007 * 109.46559 * 180.02562 * 5 3 2 29 29 H 0.97000 * 120.00602 * 335.00378 * 6 3 2 30 30 H 1.08004 * 120.43171 * 0.03472 * 8 7 6 31 31 H 0.97000 * 120.00057 * 180.02562 * 14 13 11 32 32 H 1.07999 * 120.42799 * 180.24890 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5649 1.4441 0.1257 6 7 1.6525 2.0974 -1.2518 7 6 1.5220 3.4784 -1.3010 8 6 1.1518 4.1212 -2.4893 9 7 1.0379 5.4328 -2.5001 10 6 1.2701 6.1486 -1.3963 11 6 1.1385 7.5530 -1.4465 12 1 0.8576 8.0362 -2.3706 13 6 1.3772 8.3202 -0.2995 14 7 1.7167 7.7352 0.8191 15 14 1.2103 10.1795 -0.3681 16 1 -0.1772 10.5380 -0.7571 17 1 1.5145 10.7532 0.9675 18 1 2.1618 10.7252 -1.3691 19 7 1.6291 5.5689 -0.2473 20 6 1.7568 4.2612 -0.1633 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3635 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8932 -0.5139 0.8900 26 1 3.8532 0.9568 1.0570 27 1 3.9994 0.9051 -0.7161 28 1 3.9283 2.4718 0.1261 29 1 1.4871 1.5661 -2.0463 30 1 0.9622 3.5483 -3.3850 31 1 1.8817 8.2665 1.6137 32 1 2.0434 3.7984 0.7695 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167998104.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:58 Heat of formation + Delta-G solvation = 18.012089 kcal Electronic energy + Delta-G solvation = -14737.613303 eV Core-core repulsion = 12311.052346 eV Total energy + Delta-G solvation = -2426.560957 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.90840 -38.32510 -35.53283 -33.81274 -33.61879 -31.00194 -30.04778 -27.13302 -24.91270 -24.51197 -23.19883 -21.34903 -19.70674 -18.13087 -17.54582 -17.01499 -16.12146 -15.89053 -15.17567 -14.68787 -14.61383 -14.49821 -14.29374 -13.74776 -13.23279 -12.98051 -12.85533 -12.57429 -12.53628 -12.29720 -11.96739 -11.86614 -11.54187 -11.41678 -11.20021 -11.11670 -10.69005 -9.20313 -8.45506 -8.29253 -6.30249 0.90287 1.04479 1.42986 1.56370 1.56997 2.27994 2.86528 2.87142 3.89413 3.99428 4.02658 4.10313 4.23340 4.27380 4.38277 4.55221 4.68324 4.79115 4.83099 4.94251 5.10020 5.13534 5.19582 5.23779 5.36016 5.40076 5.48255 5.63186 6.25272 6.58035 6.63123 6.81861 7.14937 7.36239 8.32060 8.53081 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.051061 B = 0.006537 C = 0.006237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.229548 B = 4281.992649 C = 4487.901945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.151 3.849 4 H 0.054 0.946 5 C -0.162 4.162 6 N -0.729 5.729 7 C 0.001 3.999 8 C 0.080 3.920 9 N -0.589 5.589 10 C 0.335 3.665 11 C -0.460 4.460 12 H 0.081 0.919 13 C 0.025 3.975 14 N -0.766 5.766 15 Si 0.995 3.005 16 H -0.260 1.260 17 H -0.264 1.264 18 H -0.261 1.261 19 N -0.506 5.506 20 C 0.074 3.926 21 H 0.042 0.958 22 H 0.044 0.956 23 H 0.068 0.932 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.028 0.972 29 H 0.398 0.602 30 H 0.162 0.838 31 H 0.278 0.722 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.783 -12.152 1.042 12.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C 0.045 3.955 4 H 0.072 0.928 5 C -0.221 4.221 6 N -0.365 5.365 7 C -0.106 4.106 8 C -0.093 4.093 9 N -0.308 5.308 10 C 0.091 3.909 11 C -0.498 4.498 12 H 0.099 0.901 13 C -0.195 4.195 14 N -0.391 5.391 15 Si 0.814 3.186 16 H -0.185 1.185 17 H -0.189 1.189 18 H -0.185 1.185 19 N -0.223 5.223 20 C -0.101 4.101 21 H 0.061 0.939 22 H 0.063 0.937 23 H 0.087 0.913 24 H 0.096 0.904 25 H 0.108 0.892 26 H 0.096 0.904 27 H 0.081 0.919 28 H 0.047 0.953 29 H 0.233 0.767 30 H 0.180 0.820 31 H 0.089 0.911 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.798 -11.131 1.423 11.250 hybrid contribution 0.013 -0.309 -0.232 0.387 sum 0.811 -11.439 1.191 11.529 Atomic orbital electron populations 1.21730 0.95864 1.01780 1.01308 1.21721 0.95968 0.93995 1.03814 1.20881 0.94034 0.93875 0.86740 0.92804 1.22245 0.96402 1.00817 1.02623 1.43750 1.79452 1.00851 1.12471 1.19185 1.08176 0.86799 0.96393 1.22799 0.99191 0.90764 0.96569 1.68515 1.23270 1.07552 1.31423 1.20117 0.92192 0.95288 0.83283 1.19313 1.43371 0.89149 0.97972 0.90079 1.26903 0.92677 1.06100 0.93853 1.70221 1.29257 1.38842 1.00789 0.85095 0.79859 0.74928 0.78683 1.18455 1.18850 1.18502 1.69192 1.16667 1.09393 1.27083 1.23041 0.99703 0.90451 0.96913 0.93910 0.93656 0.91260 0.90436 0.89218 0.90361 0.91904 0.95309 0.76696 0.82046 0.91131 0.84092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.80 71.98 0.71 -2.25 16 2 C -0.12 -2.15 5.47 30.59 0.17 -1.98 16 3 C 0.15 3.89 2.28 44.99 0.10 3.99 16 4 H 0.05 1.60 6.53 -2.39 -0.02 1.59 16 5 C -0.16 -3.99 9.47 71.99 0.68 -3.31 16 6 N -0.73 -22.39 4.68 -317.69 -1.49 -23.87 16 7 C 0.00 0.05 6.70 38.93 0.26 0.32 16 8 C 0.08 3.67 11.20 85.17 0.95 4.62 16 9 N -0.59 -32.62 10.34 -193.42 -2.00 -34.62 16 10 C 0.34 20.24 7.35 134.95 0.99 21.23 16 11 C -0.46 -27.37 9.35 23.42 0.22 -27.15 16 12 H 0.08 4.68 7.85 -2.91 -0.02 4.65 16 13 C 0.03 1.38 5.50 85.30 0.47 1.85 16 14 N -0.77 -43.18 11.41 21.84 0.25 -42.93 16 15 Si 0.99 40.48 29.56 68.60 2.03 42.51 16 16 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 17 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 18 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 19 N -0.51 -29.59 7.84 -193.42 -1.52 -31.11 16 20 C 0.07 3.64 10.14 85.17 0.86 4.50 16 21 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 22 H 0.04 1.02 7.75 -2.38 -0.02 1.00 16 23 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.03 0.88 7.80 -2.38 -0.02 0.86 16 29 H 0.40 10.32 8.63 -92.71 -0.80 9.52 16 30 H 0.16 5.97 8.06 -2.91 -0.02 5.94 16 31 H 0.28 14.10 8.29 -92.71 -0.77 13.33 16 32 H 0.14 6.24 6.34 -2.91 -0.02 6.22 16 Total: -1.00 -69.11 272.50 3.01 -66.10 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.32 Total: 22.13 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 5.42 Total: 1.80 kcal Atomic # 7 Polarization: -127.79 SS G_CDS: -4.75 Total: -132.54 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Total: -69.11 3.01 -66.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167998104.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.110 kcal (2) G-P(sol) polarization free energy of solvation -69.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds