Wall clock time and date at job start Sun Mar 29 2020 22:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.52999 * 109.47451 * 184.99880 * 3 2 1 6 6 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 7 7 C 1.38808 * 120.00053 * 204.99861 * 6 3 2 8 8 C 1.40081 * 120.75745 * 359.72800 * 7 6 3 9 9 N 1.31661 * 119.13595 * 179.73859 * 8 7 6 10 10 C 1.33599 * 120.79308 * 0.56411 * 9 8 7 11 11 C 1.41148 * 119.17522 * 179.70442 * 10 9 8 12 12 H 1.07998 * 119.99749 * 179.97438 * 11 10 9 13 13 C 1.40039 * 119.99575 * 359.97438 * 11 10 9 14 14 N 1.30727 * 120.00631 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 119.99692 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.46842 * 60.00245 * 15 13 11 17 17 H 1.48496 * 109.46818 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47211 * 300.00211 * 15 13 11 19 19 N 1.33600 * 121.65316 * 359.68298 * 10 9 8 20 20 C 1.31657 * 120.79553 * 0.02562 * 19 10 9 21 21 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 24 24 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 25 25 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 26 26 H 1.08996 * 109.47443 * 300.00108 * 5 3 2 27 27 H 1.09000 * 109.46961 * 60.00367 * 5 3 2 28 28 H 1.09001 * 109.46954 * 180.02562 * 5 3 2 29 29 H 0.97003 * 120.00178 * 25.01006 * 6 3 2 30 30 H 1.07997 * 120.43447 * 0.02562 * 8 7 6 31 31 H 0.96994 * 120.00729 * 179.97438 * 14 13 11 32 32 H 1.08006 * 120.43155 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5648 1.4443 -0.1257 6 7 1.6524 2.0974 1.2518 7 6 1.5218 3.4785 1.3011 8 6 1.7623 4.2618 0.1649 9 7 1.6239 5.5686 0.2462 10 6 1.2701 6.1486 1.3965 11 6 1.1377 7.5530 1.4468 12 1 0.8520 8.0357 2.3696 13 6 1.3770 8.3202 0.3000 14 7 1.7224 7.7358 -0.8172 15 14 1.2011 10.1788 0.3662 16 1 2.1463 10.7299 1.3702 17 1 1.5074 10.7528 -0.9686 18 1 -0.1895 10.5311 0.7500 19 7 1.0380 5.4327 2.5004 20 6 1.1522 4.1212 2.4896 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 3.9995 0.9053 0.7161 27 1 3.8532 0.9571 -1.0571 28 1 3.9282 2.4720 -0.1252 29 1 1.4872 1.5660 2.0464 30 1 2.0529 3.7994 -0.7668 31 1 1.8877 8.2672 -1.6117 32 1 0.9627 3.5482 3.3854 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167998107.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:02 Heat of formation + Delta-G solvation = 38.073210 kcal Electronic energy + Delta-G solvation = -14736.758362 eV Core-core repulsion = 12311.067320 eV Total energy + Delta-G solvation = -2425.691042 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.03284 -36.94139 -33.68018 -32.28696 -31.65456 -29.74408 -28.35211 -25.29821 -23.42839 -23.02522 -21.45051 -20.02667 -17.74861 -16.44042 -15.99262 -15.14074 -14.49129 -14.25153 -13.83474 -13.45925 -13.26993 -12.97951 -12.56417 -12.23581 -11.86698 -11.52392 -11.25551 -11.17015 -11.10354 -10.90217 -10.56283 -10.43354 -10.17126 -9.75325 -9.31522 -9.12224 -8.85286 -7.20622 -6.70513 -6.35453 -4.31419 2.80606 2.96812 3.14946 3.18507 3.25169 4.03073 4.27448 4.81585 4.92571 5.20279 5.25145 5.59830 5.73875 5.81607 5.85006 5.93186 5.97383 6.03555 6.06058 6.08617 6.29217 6.34418 6.35666 6.55111 6.57504 7.14938 7.22844 7.45246 8.23932 8.32753 8.59869 8.63434 8.80106 9.27696 10.29690 10.45335 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.051046 B = 0.006537 C = 0.006238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.388916 B = 4281.965181 C = 4487.776227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.158 3.842 4 H 0.070 0.930 5 C -0.168 4.168 6 N -0.745 5.745 7 C -0.034 4.034 8 C 0.099 3.901 9 N -0.475 5.475 10 C 0.369 3.631 11 C -0.416 4.416 12 H 0.087 0.913 13 C 0.069 3.931 14 N -0.728 5.728 15 Si 0.914 3.086 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.265 1.265 19 N -0.567 5.567 20 C 0.099 3.901 21 H 0.059 0.941 22 H 0.047 0.953 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.383 0.617 30 H 0.126 0.874 31 H 0.271 0.729 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.610 -10.472 -1.025 10.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C 0.051 3.949 4 H 0.088 0.912 5 C -0.227 4.227 6 N -0.381 5.381 7 C -0.139 4.139 8 C -0.078 4.078 9 N -0.192 5.192 10 C 0.127 3.873 11 C -0.453 4.453 12 H 0.105 0.895 13 C -0.156 4.156 14 N -0.352 5.352 15 Si 0.739 3.261 16 H -0.190 1.190 17 H -0.204 1.204 18 H -0.190 1.190 19 N -0.286 5.286 20 C -0.076 4.076 21 H 0.078 0.922 22 H 0.066 0.934 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.216 0.784 30 H 0.143 0.857 31 H 0.082 0.918 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.603 -9.345 -1.411 9.470 hybrid contribution 0.053 -0.509 0.202 0.550 sum 0.656 -9.854 -1.209 9.950 Atomic orbital electron populations 1.21729 0.95603 1.00740 1.02567 1.21775 0.96361 0.96464 1.01946 1.20638 0.93430 0.92154 0.88713 0.91184 1.22314 0.97304 1.02353 1.00704 1.43643 1.80969 1.02841 1.10649 1.19201 1.12106 0.84652 0.97948 1.22715 0.98767 0.91015 0.95289 1.69277 1.15648 1.07468 1.26800 1.19796 0.90661 0.94446 0.82400 1.19031 1.40627 0.88490 0.97146 0.89461 1.25986 0.93753 1.00910 0.94904 1.70133 1.28296 1.36662 1.00088 0.86289 0.79804 0.81938 0.78117 1.18999 1.20374 1.18994 1.68535 1.22687 1.05659 1.31692 1.22171 0.99251 0.91494 0.94639 0.92216 0.93384 0.92815 0.92043 0.91400 0.93054 0.92861 0.92169 0.78404 0.85694 0.91770 0.85791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.80 37.16 0.36 -1.33 16 2 C -0.13 -1.41 5.47 -26.73 -0.15 -1.56 16 3 C 0.16 2.23 2.28 -67.93 -0.15 2.07 16 4 H 0.07 1.10 6.54 -51.93 -0.34 0.76 16 5 C -0.17 -2.28 9.46 37.16 0.35 -1.93 16 6 N -0.74 -12.28 4.68 -51.77 -0.24 -12.52 16 7 C -0.03 -0.74 6.70 -83.32 -0.56 -1.29 16 8 C 0.10 2.39 10.12 -16.93 -0.17 2.22 16 9 N -0.48 -13.44 7.84 -12.49 -0.10 -13.54 16 10 C 0.37 10.73 7.35 -158.22 -1.16 9.57 16 11 C -0.42 -11.86 9.35 -37.80 -0.35 -12.22 16 12 H 0.09 2.40 7.85 -52.49 -0.41 1.99 16 13 C 0.07 1.83 5.50 -17.35 -0.10 1.73 16 14 N -0.73 -19.90 11.41 55.55 0.63 -19.27 16 15 Si 0.91 19.36 29.56 -169.99 -5.02 14.34 16 16 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 17 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 18 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 19 N -0.57 -15.39 10.34 -12.49 -0.13 -15.52 16 20 C 0.10 2.28 11.20 -16.94 -0.19 2.09 16 21 H 0.06 0.75 7.75 -51.93 -0.40 0.34 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.97 7.76 -51.93 -0.40 0.56 16 29 H 0.38 5.60 8.63 -40.82 -0.35 5.25 16 30 H 0.13 2.73 6.31 -52.49 -0.33 2.40 16 31 H 0.27 6.72 8.29 -40.82 -0.34 6.38 16 32 H 0.12 2.43 8.06 -52.48 -0.42 2.00 16 LS Contribution 272.41 15.07 4.11 4.11 Total: -1.00 -30.59 272.41 -7.21 -37.80 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -4.33 Total: 5.26 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -2.12 Total: -0.65 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: 0.16 Total: -60.85 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.59 -7.21 -37.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167998107.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.869 kcal (2) G-P(sol) polarization free energy of solvation -30.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds