Wall clock time and date at job start Sun Mar 29 2020 22:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.52999 * 109.47451 * 184.99880 * 3 2 1 6 6 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 7 7 C 1.38808 * 120.00053 * 204.99861 * 6 3 2 8 8 C 1.40081 * 120.75745 * 359.72800 * 7 6 3 9 9 N 1.31661 * 119.13595 * 179.73859 * 8 7 6 10 10 C 1.33599 * 120.79308 * 0.56411 * 9 8 7 11 11 C 1.41148 * 119.17522 * 179.70442 * 10 9 8 12 12 H 1.07998 * 119.99749 * 179.97438 * 11 10 9 13 13 C 1.40039 * 119.99575 * 359.97438 * 11 10 9 14 14 N 1.30727 * 120.00631 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 119.99692 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.46842 * 60.00245 * 15 13 11 17 17 H 1.48496 * 109.46818 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47211 * 300.00211 * 15 13 11 19 19 N 1.33600 * 121.65316 * 359.68298 * 10 9 8 20 20 C 1.31657 * 120.79553 * 0.02562 * 19 10 9 21 21 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 24 24 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 25 25 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 26 26 H 1.08996 * 109.47443 * 300.00108 * 5 3 2 27 27 H 1.09000 * 109.46961 * 60.00367 * 5 3 2 28 28 H 1.09001 * 109.46954 * 180.02562 * 5 3 2 29 29 H 0.97003 * 120.00178 * 25.01006 * 6 3 2 30 30 H 1.07997 * 120.43447 * 0.02562 * 8 7 6 31 31 H 0.96994 * 120.00729 * 179.97438 * 14 13 11 32 32 H 1.08006 * 120.43155 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5648 1.4443 -0.1257 6 7 1.6524 2.0974 1.2518 7 6 1.5218 3.4785 1.3011 8 6 1.7623 4.2618 0.1649 9 7 1.6239 5.5686 0.2462 10 6 1.2701 6.1486 1.3965 11 6 1.1377 7.5530 1.4468 12 1 0.8520 8.0357 2.3696 13 6 1.3770 8.3202 0.3000 14 7 1.7224 7.7358 -0.8172 15 14 1.2011 10.1788 0.3662 16 1 2.1463 10.7299 1.3702 17 1 1.5074 10.7528 -0.9686 18 1 -0.1895 10.5311 0.7500 19 7 1.0380 5.4327 2.5004 20 6 1.1522 4.1212 2.4896 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 3.9995 0.9053 0.7161 27 1 3.8532 0.9571 -1.0571 28 1 3.9282 2.4720 -0.1252 29 1 1.4872 1.5660 2.0464 30 1 2.0529 3.7994 -0.7668 31 1 1.8877 8.2672 -1.6117 32 1 0.9627 3.5482 3.3854 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167998107.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:01 Heat of formation + Delta-G solvation = 18.001891 kcal Electronic energy + Delta-G solvation = -14737.628719 eV Core-core repulsion = 12311.067320 eV Total energy + Delta-G solvation = -2426.561399 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.90873 -38.32499 -35.53252 -33.81246 -33.61903 -31.00164 -30.04835 -27.13366 -24.91098 -24.51241 -23.19912 -21.34909 -19.70671 -18.13130 -17.54651 -17.01436 -16.12265 -15.88705 -15.17883 -14.68866 -14.61191 -14.49847 -14.29374 -13.74736 -13.23324 -12.98018 -12.85541 -12.57423 -12.53563 -12.29826 -11.96694 -11.86585 -11.54302 -11.41787 -11.20100 -11.11472 -10.68985 -9.20273 -8.45537 -8.29189 -6.30256 0.90278 1.04500 1.42999 1.56379 1.56996 2.27987 2.86547 2.87109 3.89413 3.99375 4.02769 4.10369 4.23293 4.27368 4.38270 4.55184 4.68340 4.79148 4.83104 4.94220 5.10017 5.13501 5.19573 5.23802 5.36039 5.40097 5.48260 5.63182 6.25271 6.58047 6.63122 6.81898 7.14916 7.36242 8.32085 8.53120 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.051046 B = 0.006537 C = 0.006238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.388916 B = 4281.965181 C = 4487.776227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.151 3.849 4 H 0.054 0.946 5 C -0.162 4.162 6 N -0.729 5.729 7 C 0.001 3.999 8 C 0.074 3.926 9 N -0.506 5.506 10 C 0.335 3.665 11 C -0.460 4.460 12 H 0.081 0.919 13 C 0.025 3.975 14 N -0.767 5.767 15 Si 0.995 3.005 16 H -0.261 1.261 17 H -0.264 1.264 18 H -0.260 1.260 19 N -0.589 5.589 20 C 0.080 3.920 21 H 0.044 0.956 22 H 0.068 0.932 23 H 0.042 0.958 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.028 0.972 29 H 0.398 0.602 30 H 0.142 0.858 31 H 0.278 0.722 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.789 -12.153 -1.039 12.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C 0.045 3.955 4 H 0.072 0.928 5 C -0.221 4.221 6 N -0.365 5.365 7 C -0.106 4.106 8 C -0.101 4.101 9 N -0.223 5.223 10 C 0.091 3.909 11 C -0.498 4.498 12 H 0.099 0.901 13 C -0.195 4.195 14 N -0.391 5.391 15 Si 0.814 3.186 16 H -0.185 1.185 17 H -0.189 1.189 18 H -0.185 1.185 19 N -0.308 5.308 20 C -0.093 4.093 21 H 0.063 0.937 22 H 0.087 0.913 23 H 0.061 0.939 24 H 0.096 0.904 25 H 0.108 0.892 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.047 0.953 29 H 0.233 0.767 30 H 0.159 0.841 31 H 0.089 0.911 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.793 -11.133 -1.424 11.252 hybrid contribution 0.012 -0.308 0.232 0.386 sum 0.804 -11.441 -1.191 11.531 Atomic orbital electron populations 1.21731 0.95865 1.01778 1.01306 1.21720 0.95967 0.93996 1.03814 1.20880 0.94037 0.93876 0.86735 0.92814 1.22245 0.96395 1.00828 1.02627 1.43754 1.79454 1.00850 1.12470 1.19187 1.08147 0.86787 0.96436 1.23041 0.99666 0.90459 0.96938 1.69186 1.16699 1.09419 1.27039 1.20116 0.92236 0.95278 0.83247 1.19311 1.43281 0.89160 0.98049 0.90075 1.26901 0.92688 1.06087 0.93847 1.70218 1.29228 1.38837 1.00836 0.85096 0.79850 0.74940 0.78686 1.18488 1.18853 1.18472 1.68515 1.23227 1.07557 1.31461 1.22799 0.99203 0.90767 0.96549 0.93656 0.91261 0.93911 0.90434 0.89219 0.91908 0.90354 0.95294 0.76697 0.84093 0.91129 0.82044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.80 71.98 0.71 -2.25 16 2 C -0.12 -2.15 5.47 30.59 0.17 -1.98 16 3 C 0.15 3.89 2.28 44.99 0.10 3.99 16 4 H 0.05 1.60 6.54 -2.39 -0.02 1.58 16 5 C -0.16 -3.99 9.46 71.98 0.68 -3.31 16 6 N -0.73 -22.39 4.68 -317.69 -1.49 -23.88 16 7 C 0.00 0.05 6.70 38.93 0.26 0.31 16 8 C 0.07 3.64 10.12 85.17 0.86 4.50 16 9 N -0.51 -29.60 7.84 -193.43 -1.52 -31.11 16 10 C 0.34 20.24 7.35 134.95 0.99 21.23 16 11 C -0.46 -27.36 9.35 23.42 0.22 -27.14 16 12 H 0.08 4.68 7.85 -2.91 -0.02 4.66 16 13 C 0.03 1.38 5.50 85.29 0.47 1.85 16 14 N -0.77 -43.19 11.41 21.84 0.25 -42.94 16 15 Si 0.99 40.48 29.56 68.60 2.03 42.51 16 16 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 17 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 18 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 19 N -0.59 -32.62 10.34 -193.42 -2.00 -34.62 16 20 C 0.08 3.67 11.20 85.17 0.95 4.62 16 21 H 0.04 1.02 7.75 -2.39 -0.02 1.00 16 22 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 24 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.03 0.88 7.76 -2.39 -0.02 0.87 16 29 H 0.40 10.32 8.63 -92.71 -0.80 9.52 16 30 H 0.14 6.24 6.31 -2.91 -0.02 6.22 16 31 H 0.28 14.10 8.29 -92.71 -0.77 13.33 16 32 H 0.16 5.97 8.06 -2.91 -0.02 5.94 16 Total: -1.00 -69.10 272.41 3.01 -66.10 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.32 Total: 22.13 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 5.41 Total: 1.81 kcal Atomic # 7 Polarization: -127.80 SS G_CDS: -4.75 Total: -132.55 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Total: -69.10 3.01 -66.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167998107.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.100 kcal (2) G-P(sol) polarization free energy of solvation -69.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds