Wall clock time and date at job start Sun Mar 29 2020 22:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46919 * 2 1 4 4 H 1.09000 * 109.47042 * 55.00509 * 3 2 1 5 5 C 1.53003 * 109.46776 * 175.00013 * 3 2 1 6 6 N 1.46494 * 109.47693 * 295.00402 * 3 2 1 7 7 C 1.37936 * 120.00417 * 155.00339 * 6 3 2 8 8 N 1.32618 * 120.23539 * 0.24434 * 7 6 3 9 9 C 1.32239 * 120.08792 * 180.28388 * 8 7 6 10 10 C 1.38965 * 120.56538 * 359.72494 * 9 8 7 11 11 N 1.31710 * 120.47977 * 0.02562 * 10 9 8 12 12 C 1.33906 * 119.89238 * 359.97438 * 11 10 9 13 13 C 1.40825 * 120.27564 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99816 * 186.70206 * 13 12 11 15 15 C 1.40116 * 120.00200 * 6.69926 * 13 12 11 16 16 N 1.30734 * 119.99928 * 353.45780 * 15 13 12 17 17 Si 1.86795 * 120.00089 * 173.73300 * 15 13 12 18 18 H 1.48502 * 109.47479 * 94.98743 * 17 15 13 19 19 H 1.48510 * 109.47117 * 214.98811 * 17 15 13 20 20 H 1.48506 * 109.47356 * 334.98739 * 17 15 13 21 21 H 1.08999 * 109.46793 * 299.99550 * 1 2 3 22 22 H 1.08994 * 109.47243 * 59.99578 * 1 2 3 23 23 H 1.08992 * 109.47150 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46793 * 240.00450 * 2 1 3 25 25 H 1.08994 * 109.47243 * 120.00422 * 2 1 3 26 26 H 1.09000 * 109.46930 * 60.00428 * 5 3 2 27 27 H 1.09008 * 109.47134 * 179.97438 * 5 3 2 28 28 H 1.08998 * 109.47447 * 300.00221 * 5 3 2 29 29 H 0.97001 * 120.00151 * 334.99675 * 6 3 2 30 30 H 1.08003 * 119.72010 * 179.70720 * 9 8 7 31 31 H 1.08004 * 119.76370 * 179.97438 * 10 9 8 32 32 H 0.97002 * 119.99972 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4443 0.1257 6 7 1.6524 2.0976 -1.2517 7 6 1.5226 3.4700 -1.3005 8 7 1.7524 4.2014 -0.2184 9 6 1.6216 5.5164 -0.2670 10 6 1.2493 6.1463 -1.4484 11 7 1.0204 5.4421 -2.5377 12 6 1.1472 4.1093 -2.5096 13 6 0.9040 3.3484 -3.6693 14 1 0.9012 2.2696 -3.6166 15 6 0.6655 3.9907 -4.8915 16 7 0.5416 5.2915 -4.9330 17 14 0.5169 2.9878 -6.4604 18 1 -0.9151 2.7057 -6.7339 19 1 1.0960 3.7531 -7.5938 20 1 1.2520 1.7073 -6.3009 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 3.9994 0.9053 -0.7161 27 1 3.9283 2.4720 0.1253 28 1 3.8532 0.9569 1.0570 29 1 1.4871 1.5663 -2.0462 30 1 1.8056 6.1059 0.6190 31 1 1.1459 7.2211 -1.4734 32 1 0.3769 5.7363 -5.7792 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168000540.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:52 Heat of formation + Delta-G solvation = 33.777745 kcal Electronic energy + Delta-G solvation = -15065.759627 eV Core-core repulsion = 12639.882320 eV Total energy + Delta-G solvation = -2425.877307 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.99206 -36.60122 -33.92113 -32.55727 -31.30117 -29.68239 -27.95190 -25.86231 -23.45877 -22.24962 -21.41194 -19.91905 -17.55958 -16.62213 -16.04223 -14.97098 -14.26182 -14.08396 -13.74960 -13.44697 -13.03127 -12.90931 -12.73429 -12.05535 -11.77539 -11.40295 -11.35382 -11.31481 -10.98835 -10.69735 -10.63251 -10.24334 -10.17212 -9.77041 -9.35007 -9.28558 -8.51178 -7.29120 -6.72745 -6.38406 -4.37500 2.69676 3.06524 3.07670 3.11465 3.29709 3.91061 4.38659 4.76885 5.16107 5.41501 5.45158 5.87008 5.87761 5.93270 5.96958 6.12350 6.16037 6.20228 6.21233 6.32886 6.43651 6.55288 6.66900 6.75264 6.87503 7.05615 7.12027 7.71334 8.02988 8.19774 8.48278 8.67607 8.93619 9.52879 10.04906 10.27834 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022815 B = 0.010862 C = 0.008099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.991506 B = 2577.071804 C = 3456.436882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C 0.160 3.840 4 H 0.077 0.923 5 C -0.159 4.159 6 N -0.717 5.717 7 C 0.267 3.733 8 N -0.500 5.500 9 C -0.084 4.084 10 C 0.026 3.974 11 N -0.450 5.450 12 C 0.193 3.807 13 C -0.425 4.425 14 H 0.082 0.918 15 C 0.069 3.931 16 N -0.715 5.715 17 Si 0.906 3.094 18 H -0.270 1.270 19 H -0.276 1.276 20 H -0.261 1.261 21 H 0.051 0.949 22 H 0.061 0.939 23 H 0.046 0.954 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.400 0.600 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.083 -7.274 3.523 8.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 C 0.053 3.947 4 H 0.095 0.905 5 C -0.218 4.218 6 N -0.358 5.358 7 C 0.020 3.980 8 N -0.222 5.222 9 C -0.238 4.238 10 C -0.137 4.137 11 N -0.167 5.167 12 C 0.058 3.942 13 C -0.459 4.459 14 H 0.100 0.900 15 C -0.156 4.156 16 N -0.338 5.338 17 Si 0.730 3.270 18 H -0.195 1.195 19 H -0.201 1.201 20 H -0.185 1.185 21 H 0.070 0.930 22 H 0.080 0.920 23 H 0.065 0.935 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.237 0.763 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.083 -6.935 3.614 7.895 hybrid contribution -0.046 -0.419 -0.934 1.025 sum 1.038 -7.354 2.680 7.896 Atomic orbital electron populations 1.21730 0.95689 1.00632 1.02610 1.21816 0.96369 0.96817 1.01801 1.20600 0.93460 0.91529 0.89072 0.90487 1.22197 0.97393 1.02130 1.00111 1.43792 1.77992 1.02546 1.11428 1.19312 1.01459 0.85379 0.91805 1.67311 1.19249 1.07013 1.28620 1.22265 1.12872 0.90253 0.98366 1.23125 0.99980 0.99629 0.90973 1.69472 1.17449 1.04864 1.24947 1.19050 0.94159 0.89844 0.91125 1.19210 1.41513 0.93701 0.91503 0.90006 1.26000 0.93923 0.95021 1.00678 1.70106 1.27880 1.08960 1.26829 0.86340 0.79239 0.80631 0.80810 1.19513 1.20069 1.18474 0.92998 0.91984 0.93466 0.92031 0.91567 0.93427 0.92193 0.93274 0.76265 0.86130 0.85993 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.80 37.16 0.36 -1.67 16 2 C -0.13 -1.76 5.47 -26.73 -0.15 -1.90 16 3 C 0.16 2.73 2.59 -67.93 -0.18 2.55 16 4 H 0.08 1.46 7.55 -51.93 -0.39 1.07 16 5 C -0.16 -2.56 9.50 37.16 0.35 -2.20 16 6 N -0.72 -14.56 4.57 -53.41 -0.24 -14.81 16 7 C 0.27 6.58 7.48 -154.83 -1.16 5.42 16 8 N -0.50 -12.27 9.35 -11.67 -0.11 -12.38 16 9 C -0.08 -1.99 11.22 -17.11 -0.19 -2.18 16 10 C 0.03 0.64 11.21 -17.33 -0.19 0.45 16 11 N -0.45 -12.59 8.07 -10.79 -0.09 -12.67 16 12 C 0.19 5.22 6.56 -84.61 -0.55 4.67 16 13 C -0.42 -10.92 8.86 -37.90 -0.34 -11.26 16 14 H 0.08 1.90 6.16 -52.48 -0.32 1.58 16 15 C 0.07 1.72 5.49 -17.31 -0.10 1.63 16 16 N -0.72 -18.96 11.51 55.56 0.64 -18.32 16 17 Si 0.91 18.15 29.56 -169.99 -5.03 13.12 16 18 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 19 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.06 0.95 7.75 -51.93 -0.40 0.55 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.40 7.78 6.60 -40.82 -0.27 7.51 16 30 H 0.12 2.50 8.06 -52.48 -0.42 2.08 16 31 H 0.12 2.69 8.06 -52.48 -0.42 2.27 16 32 H 0.27 6.56 8.29 -40.82 -0.34 6.23 16 LS Contribution 272.03 15.07 4.10 4.10 Total: -1.00 -29.31 272.03 -7.19 -36.50 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -4.33 Total: 8.97 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -2.14 Total: -4.51 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: 0.20 Total: -58.18 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.12 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.31 -7.19 -36.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168000540.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.279 kcal (2) G-P(sol) polarization free energy of solvation -29.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds