Wall clock time and date at job start Sun Mar 29 2020 22:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46919 * 2 1 4 4 H 1.09000 * 109.47042 * 55.00509 * 3 2 1 5 5 C 1.53003 * 109.46776 * 175.00013 * 3 2 1 6 6 N 1.46494 * 109.47693 * 295.00402 * 3 2 1 7 7 C 1.37936 * 120.00417 * 155.00339 * 6 3 2 8 8 N 1.32618 * 120.23539 * 0.24434 * 7 6 3 9 9 C 1.32239 * 120.08792 * 180.28388 * 8 7 6 10 10 C 1.38965 * 120.56538 * 359.72494 * 9 8 7 11 11 N 1.31710 * 120.47977 * 0.02562 * 10 9 8 12 12 C 1.33906 * 119.89238 * 359.97438 * 11 10 9 13 13 C 1.40825 * 120.27564 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99816 * 186.70206 * 13 12 11 15 15 C 1.40116 * 120.00200 * 6.69926 * 13 12 11 16 16 N 1.30734 * 119.99928 * 353.45780 * 15 13 12 17 17 Si 1.86795 * 120.00089 * 173.73300 * 15 13 12 18 18 H 1.48502 * 109.47479 * 94.98743 * 17 15 13 19 19 H 1.48510 * 109.47117 * 214.98811 * 17 15 13 20 20 H 1.48506 * 109.47356 * 334.98739 * 17 15 13 21 21 H 1.08999 * 109.46793 * 299.99550 * 1 2 3 22 22 H 1.08994 * 109.47243 * 59.99578 * 1 2 3 23 23 H 1.08992 * 109.47150 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46793 * 240.00450 * 2 1 3 25 25 H 1.08994 * 109.47243 * 120.00422 * 2 1 3 26 26 H 1.09000 * 109.46930 * 60.00428 * 5 3 2 27 27 H 1.09008 * 109.47134 * 179.97438 * 5 3 2 28 28 H 1.08998 * 109.47447 * 300.00221 * 5 3 2 29 29 H 0.97001 * 120.00151 * 334.99675 * 6 3 2 30 30 H 1.08003 * 119.72010 * 179.70720 * 9 8 7 31 31 H 1.08004 * 119.76370 * 179.97438 * 10 9 8 32 32 H 0.97002 * 119.99972 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4443 0.1257 6 7 1.6524 2.0976 -1.2517 7 6 1.5226 3.4700 -1.3005 8 7 1.7524 4.2014 -0.2184 9 6 1.6216 5.5164 -0.2670 10 6 1.2493 6.1463 -1.4484 11 7 1.0204 5.4421 -2.5377 12 6 1.1472 4.1093 -2.5096 13 6 0.9040 3.3484 -3.6693 14 1 0.9012 2.2696 -3.6166 15 6 0.6655 3.9907 -4.8915 16 7 0.5416 5.2915 -4.9330 17 14 0.5169 2.9878 -6.4604 18 1 -0.9151 2.7057 -6.7339 19 1 1.0960 3.7531 -7.5938 20 1 1.2520 1.7073 -6.3009 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 3.9994 0.9053 -0.7161 27 1 3.9283 2.4720 0.1253 28 1 3.8532 0.9569 1.0570 29 1 1.4871 1.5663 -2.0462 30 1 1.8056 6.1059 0.6190 31 1 1.1459 7.2211 -1.4734 32 1 0.3769 5.7363 -5.7792 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168000540.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:51 Heat of formation + Delta-G solvation = 15.826541 kcal Electronic energy + Delta-G solvation = -15066.538049 eV Core-core repulsion = 12639.882320 eV Total energy + Delta-G solvation = -2426.655730 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.85076 -38.08504 -35.80494 -34.17751 -33.15898 -31.05843 -29.63631 -27.77309 -24.82493 -23.98342 -23.19848 -21.35762 -19.46639 -18.34816 -17.75531 -16.76812 -15.85188 -15.79502 -15.22417 -14.99689 -14.52158 -14.35924 -14.22699 -13.82507 -13.16551 -13.15616 -12.93198 -12.58206 -12.35575 -12.26689 -11.94309 -11.82410 -11.60294 -11.50272 -11.19227 -11.12002 -10.36973 -9.20428 -8.54229 -8.25458 -6.30132 0.82855 1.29249 1.43142 1.54534 1.58971 2.23356 2.77850 2.89433 3.93410 3.95559 4.17140 4.27277 4.33350 4.37468 4.55872 4.62016 4.78699 4.85947 4.92301 5.03767 5.09725 5.12704 5.18553 5.23854 5.36096 5.42181 5.51505 5.84672 6.15640 6.37138 6.74312 6.84873 7.06761 7.67180 8.12887 8.45316 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022815 B = 0.010862 C = 0.008099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.991506 B = 2577.071804 C = 3456.436882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.155 3.845 4 H 0.056 0.944 5 C -0.152 4.152 6 N -0.708 5.708 7 C 0.267 3.733 8 N -0.512 5.512 9 C -0.082 4.082 10 C 0.001 3.999 11 N -0.488 5.488 12 C 0.156 3.844 13 C -0.446 4.446 14 H 0.099 0.901 15 C 0.022 3.978 16 N -0.759 5.759 17 Si 0.987 3.013 18 H -0.264 1.264 19 H -0.274 1.274 20 H -0.248 1.248 21 H 0.044 0.956 22 H 0.038 0.962 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.094 0.906 26 H 0.055 0.945 27 H 0.026 0.974 28 H 0.079 0.921 29 H 0.404 0.596 30 H 0.152 0.848 31 H 0.142 0.858 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.400 -9.557 3.524 10.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C 0.050 3.950 4 H 0.075 0.925 5 C -0.211 4.211 6 N -0.348 5.348 7 C 0.019 3.981 8 N -0.235 5.235 9 C -0.236 4.236 10 C -0.160 4.160 11 N -0.206 5.206 12 C 0.021 3.979 13 C -0.481 4.481 14 H 0.117 0.883 15 C -0.200 4.200 16 N -0.382 5.382 17 Si 0.807 3.193 18 H -0.189 1.189 19 H -0.198 1.198 20 H -0.171 1.171 21 H 0.063 0.937 22 H 0.057 0.943 23 H 0.091 0.909 24 H 0.092 0.908 25 H 0.112 0.888 26 H 0.074 0.926 27 H 0.046 0.954 28 H 0.098 0.902 29 H 0.241 0.759 30 H 0.169 0.831 31 H 0.159 0.841 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.410 -9.237 3.657 10.034 hybrid contribution -0.132 0.291 -0.821 0.881 sum 1.278 -8.946 2.837 9.472 Atomic orbital electron populations 1.21718 0.95912 1.01832 1.01093 1.21773 0.96053 0.94221 1.03759 1.20829 0.94234 0.93279 0.86685 0.92539 1.22114 0.96301 1.00534 1.02133 1.43928 1.76917 1.01064 1.12888 1.19509 1.00339 0.87100 0.91192 1.67440 1.20170 1.07341 1.28516 1.22745 1.11321 0.90461 0.99048 1.23487 1.00809 1.00655 0.91034 1.69395 1.18872 1.05826 1.26518 1.19547 0.95445 0.90205 0.92702 1.19643 1.41915 0.94617 0.91930 0.88313 1.27004 0.92848 0.96038 1.04096 1.70225 1.28857 1.10996 1.28089 0.85119 0.79425 0.79090 0.75678 1.18877 1.19837 1.17080 0.93728 0.94309 0.90905 0.90783 0.88752 0.92565 0.95449 0.90231 0.75880 0.83103 0.84064 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.80 71.98 0.71 -3.02 16 2 C -0.12 -2.88 5.47 30.59 0.17 -2.71 16 3 C 0.16 5.05 2.59 44.99 0.12 5.17 16 4 H 0.06 2.09 7.55 -2.39 -0.02 2.07 16 5 C -0.15 -4.58 9.50 71.98 0.68 -3.90 16 6 N -0.71 -28.39 4.57 -322.91 -1.48 -29.86 16 7 C 0.27 13.25 7.48 134.03 1.00 14.25 16 8 N -0.51 -25.26 9.35 -190.83 -1.78 -27.04 16 9 C -0.08 -3.94 11.22 84.81 0.95 -2.99 16 10 C 0.00 0.07 11.21 84.89 0.95 1.02 16 11 N -0.49 -28.10 8.07 -188.06 -1.52 -29.61 16 12 C 0.16 8.65 6.56 40.35 0.26 8.91 16 13 C -0.45 -23.16 8.86 23.36 0.21 -22.96 16 14 H 0.10 4.55 6.16 -2.91 -0.02 4.53 16 15 C 0.02 1.08 5.49 85.31 0.47 1.55 16 16 N -0.76 -41.04 11.51 21.86 0.25 -40.79 16 17 Si 0.99 36.85 29.56 68.60 2.03 38.87 16 18 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 19 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 20 H -0.25 -8.62 7.11 99.48 0.71 -7.91 16 21 H 0.04 1.16 8.14 -2.39 -0.02 1.15 16 22 H 0.04 1.14 7.75 -2.39 -0.02 1.12 16 23 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 24 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 27 H 0.03 0.98 8.14 -2.38 -0.02 0.97 16 28 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.40 15.35 6.60 -92.71 -0.61 14.74 16 30 H 0.15 6.10 8.06 -2.91 -0.02 6.07 16 31 H 0.14 6.35 8.06 -2.91 -0.02 6.33 16 32 H 0.28 13.65 8.29 -92.71 -0.77 12.88 16 Total: -1.00 -64.53 272.03 3.52 -61.00 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: 0.50 Total: 32.09 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: 5.52 Total: -4.66 kcal Atomic # 7 Polarization: -122.78 SS G_CDS: -4.53 Total: -127.31 kcal Atomic # 14 Polarization: 36.85 SS G_CDS: 2.03 Total: 38.87 kcal Total: -64.53 3.52 -61.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168000540.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.831 kcal (2) G-P(sol) polarization free energy of solvation -64.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds