Wall clock time and date at job start Sun Mar 29 2020 21:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 120.00079 * 2 1 4 4 H 1.48499 * 109.46994 * 269.99997 * 3 2 1 5 5 H 1.48495 * 109.46835 * 30.00389 * 3 2 1 6 6 H 1.48504 * 109.46758 * 150.00183 * 3 2 1 7 7 C 1.37880 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99547 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00162 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47130 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47310 * 179.97438 * 10 9 7 12 12 N 1.46508 * 109.47028 * 179.97438 * 11 10 9 13 13 C 1.39671 * 119.99828 * 180.02562 * 12 11 10 14 14 C 1.38978 * 120.04799 * 359.97124 * 13 12 11 15 15 C 1.38107 * 120.03702 * 180.02562 * 14 13 12 16 16 C 1.38213 * 120.12574 * 359.74472 * 15 14 13 17 17 C 1.38767 * 120.09519 * 0.51415 * 16 15 14 18 18 O 1.35905 * 120.02062 * 179.76940 * 17 16 15 19 19 C 1.38619 * 119.96399 * 359.48442 * 17 16 15 20 20 H 0.97001 * 119.99963 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47101 * 59.99997 * 9 7 2 22 22 H 1.08996 * 109.46916 * 299.99708 * 9 7 2 23 23 H 1.09005 * 109.47620 * 59.99490 * 10 9 7 24 24 H 1.09009 * 109.46677 * 299.99817 * 10 9 7 25 25 H 1.09002 * 109.47376 * 59.99725 * 11 10 9 26 26 H 1.09001 * 109.47333 * 299.99876 * 11 10 9 27 27 H 0.96994 * 120.00231 * 359.97438 * 12 11 10 28 28 H 1.08005 * 119.98093 * 0.02562 * 14 13 12 29 29 H 1.07997 * 119.93807 * 180.02562 * 15 14 13 30 30 H 1.08005 * 119.95276 * 180.27371 * 16 15 14 31 31 H 0.96705 * 113.99576 * 269.71966 * 18 17 16 32 32 H 1.07994 * 120.06347 * 180.23140 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 -0.0014 11 6 5.5514 -2.6365 -0.0014 12 7 6.0398 -4.0179 -0.0022 13 6 7.4129 -4.2731 -0.0018 14 6 8.3170 -3.2175 -0.0013 15 6 9.6747 -3.4701 -0.0015 16 6 10.1380 -4.7723 0.0032 17 6 9.2402 -5.8304 -0.0027 18 8 9.6975 -7.1102 -0.0028 19 6 7.8766 -5.5812 -0.0025 20 1 -0.4850 0.8401 0.0004 21 1 3.8745 -0.6808 0.8905 22 1 3.8751 -0.6797 -0.8895 23 1 3.6585 -3.1495 -0.8920 24 1 3.6578 -3.1513 0.8880 25 1 5.9149 -2.1235 0.8890 26 1 5.9148 -2.1219 -0.8909 27 1 5.4095 -4.7551 -0.0021 28 1 7.9575 -2.1991 -0.0008 29 1 10.3758 -2.6487 -0.0007 30 1 11.2005 -4.9666 0.0075 31 1 9.8297 -7.4805 -0.8863 32 1 7.1764 -6.4034 -0.0032 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168435550.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:22 Heat of formation + Delta-G solvation = -54.654054 kcal Electronic energy + Delta-G solvation = -13929.981355 eV Core-core repulsion = 11467.976607 eV Total energy + Delta-G solvation = -2462.004749 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.67226 -38.45299 -36.77588 -35.23139 -33.52550 -31.16655 -29.98191 -28.04742 -24.80882 -23.58323 -22.37632 -21.88163 -19.21792 -18.95189 -17.44974 -17.19067 -16.58303 -16.35957 -16.19759 -15.50100 -15.10842 -14.73739 -14.45883 -14.30199 -13.76539 -13.26137 -12.96577 -12.84275 -12.67648 -12.25105 -11.86395 -11.74969 -11.63248 -11.43604 -11.32071 -10.88955 -10.76912 -9.63081 -8.36010 -8.30004 -6.35009 0.41112 0.66451 1.37554 1.39557 1.51343 2.36600 2.46184 2.85760 3.05754 3.44672 4.01692 4.11653 4.21121 4.31917 4.38254 4.51508 4.61620 4.74391 4.90690 4.93153 5.01304 5.05008 5.35333 5.44255 5.55446 5.56792 5.63742 5.64557 5.82869 6.25503 6.39075 6.73499 6.79118 6.93704 7.29995 8.86864 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.063513 B = 0.004490 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.749369 B = 6234.316025 C = 6646.758056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.242 1.242 7 C -0.536 4.536 8 H 0.030 0.970 9 C -0.009 4.009 10 C -0.103 4.103 11 C 0.133 3.867 12 N -0.744 5.744 13 C 0.223 3.777 14 C -0.224 4.224 15 C -0.055 4.055 16 C -0.217 4.217 17 C 0.144 3.856 18 O -0.512 6.512 19 C -0.242 4.242 20 H 0.266 0.734 21 H 0.025 0.975 22 H 0.024 0.976 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.403 0.597 28 H 0.127 0.873 29 H 0.149 0.851 30 H 0.139 0.861 31 H 0.410 0.590 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.351 -7.992 -1.769 22.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.165 1.165 7 C -0.574 4.574 8 H 0.048 0.952 9 C -0.047 4.047 10 C -0.141 4.141 11 C 0.009 3.991 12 N -0.372 5.372 13 C 0.118 3.882 14 C -0.247 4.247 15 C -0.073 4.073 16 C -0.237 4.237 17 C 0.099 3.901 18 O -0.325 6.325 19 C -0.265 4.265 20 H 0.075 0.925 21 H 0.043 0.957 22 H 0.043 0.957 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.238 0.762 28 H 0.145 0.855 29 H 0.166 0.834 30 H 0.157 0.843 31 H 0.270 0.730 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 21.119 -7.627 -1.169 22.484 hybrid contribution -0.823 0.202 -0.481 0.975 sum 20.296 -7.424 -1.651 21.674 Atomic orbital electron populations 1.70075 1.08459 1.28241 1.52621 1.26077 0.95643 1.03774 0.94023 0.85611 0.79593 0.77876 0.79298 1.19036 1.21185 1.16535 1.21502 0.92246 0.93085 1.50565 0.95167 1.19445 0.93778 0.94409 0.97058 1.21463 0.93202 0.98120 1.01344 1.21341 0.93798 0.82750 1.01204 1.44853 1.03205 1.07850 1.81325 1.17868 0.84370 0.93348 0.92647 1.20936 0.93578 0.98329 1.11830 1.21047 0.94651 0.96924 0.94697 1.21348 1.00338 0.92234 1.09819 1.18265 0.90478 0.84292 0.97080 1.84730 1.87196 1.25128 1.35453 1.20900 0.96001 0.95352 1.14262 0.92488 0.95709 0.95736 0.92610 0.92757 0.92107 0.91820 0.76202 0.85523 0.83377 0.84344 0.73043 0.85427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.84 13.96 21.45 0.30 -59.54 16 2 C 0.00 0.08 5.47 84.66 0.46 0.54 16 3 Si 0.95 43.44 27.47 68.60 1.88 45.33 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.24 -10.06 6.54 99.48 0.65 -9.41 16 7 C -0.54 -30.61 9.66 25.60 0.25 -30.37 16 8 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 9 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 10 C -0.10 -3.76 5.27 30.59 0.16 -3.60 16 11 C 0.13 3.88 4.91 86.38 0.42 4.30 16 12 N -0.74 -19.73 5.73 -339.45 -1.95 -21.68 16 13 C 0.22 5.75 6.65 38.20 0.25 6.00 16 14 C -0.22 -5.37 9.31 22.42 0.21 -5.16 16 15 C -0.05 -1.10 10.03 22.23 0.22 -0.88 16 16 C -0.22 -4.40 9.98 22.39 0.22 -4.17 16 17 C 0.14 3.20 6.70 22.49 0.15 3.35 16 18 O -0.51 -9.66 13.50 -92.48 -1.25 -10.91 16 19 C -0.24 -5.84 9.83 22.49 0.22 -5.62 16 20 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 21 H 0.02 1.08 7.20 -2.39 -0.02 1.06 16 22 H 0.02 1.05 7.57 -2.39 -0.02 1.03 16 23 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 24 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 25 H 0.06 1.74 7.95 -2.39 -0.02 1.72 16 26 H 0.06 1.78 7.95 -2.39 -0.02 1.76 16 27 H 0.40 9.94 8.48 -92.71 -0.79 9.15 16 28 H 0.13 2.91 6.73 -2.91 -0.02 2.89 16 29 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 30 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 31 H 0.41 3.56 9.06 -74.05 -0.67 2.89 16 32 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -68.05 274.97 1.30 -66.75 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -0.39 Total: 15.93 kcal Atomic # 6 Polarization: -38.58 SS G_CDS: 2.70 Total: -35.89 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -1.65 Total: -81.21 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -1.25 Total: -10.91 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.88 Total: 45.33 kcal Total: -68.05 1.30 -66.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168435550.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.097 kcal (2) G-P(sol) polarization free energy of solvation -68.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds