Wall clock time and date at job start Sun Mar 29 2020 21:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37102 * 119.99957 * 2 1 4 4 H 1.07997 * 120.00181 * 151.15123 * 3 2 1 5 5 C 1.38952 * 119.99942 * 331.15167 * 3 2 1 6 6 N 1.31410 * 119.99779 * 350.46928 * 5 3 2 7 7 Si 1.86790 * 120.00125 * 170.47366 * 5 3 2 8 8 H 1.48509 * 109.47336 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47556 * 119.99967 * 7 5 3 10 10 H 1.48505 * 109.47379 * 240.00298 * 7 5 3 11 11 C 1.34776 * 120.00142 * 179.72134 * 2 1 3 12 12 O 1.21292 * 119.99975 * 180.02562 * 11 2 1 13 13 C 1.50697 * 120.00111 * 0.02562 * 11 2 1 14 14 C 1.50697 * 109.47207 * 180.02562 * 13 11 2 15 15 N 1.31799 * 119.12283 * 269.72309 * 14 13 11 16 16 C 1.32329 * 120.81823 * 179.75722 * 15 14 13 17 17 C 1.38595 * 119.10669 * 0.51598 * 16 15 14 18 18 C 1.38599 * 118.39695 * 359.74286 * 17 16 15 19 19 N 1.31796 * 119.12418 * 90.00280 * 14 13 11 20 20 H 1.09005 * 109.46781 * 84.13353 * 1 2 3 21 21 H 1.08999 * 109.47235 * 204.12293 * 1 2 3 22 22 H 1.08997 * 109.47401 * 324.13048 * 1 2 3 23 23 H 0.97002 * 120.00117 * 179.97438 * 6 5 3 24 24 H 1.09007 * 109.46723 * 299.99814 * 13 11 2 25 25 H 1.08999 * 109.47367 * 59.99741 * 13 11 2 26 26 H 1.08002 * 120.44840 * 180.23177 * 16 15 14 27 27 H 1.07996 * 120.80356 * 179.77425 * 17 16 15 28 28 H 1.08003 * 120.44671 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1299 1.2454 0.4513 5 6 1.5850 2.3160 -0.5806 6 7 0.4848 2.2082 -1.2910 7 14 2.3889 3.9864 -0.3515 8 1 3.6075 3.8390 0.4844 9 1 2.7618 4.5424 -1.6770 10 1 1.4365 4.9062 0.3209 11 6 2.1389 -1.1672 0.0057 12 8 3.3518 -1.1671 0.0061 13 6 1.3855 -2.4723 0.0114 14 6 2.3648 -3.6176 0.0178 15 7 2.7783 -4.1144 -1.1309 16 6 3.6414 -5.1169 -1.1645 17 6 4.1017 -5.6506 0.0289 18 6 3.6399 -5.1051 1.2164 19 7 2.7807 -4.0996 1.1718 20 1 -0.3633 0.1050 -1.0223 21 1 -0.3634 -0.9379 0.4200 22 1 -0.3634 0.8327 0.6021 23 1 0.0898 2.9962 -1.6960 24 1 0.7585 -2.5258 0.9015 25 1 0.7591 -2.5342 -0.8785 26 1 3.9791 -5.5169 -2.1092 27 1 4.8035 -6.4714 0.0334 28 1 3.9771 -5.4951 2.1654 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177373828.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:08 Heat of formation + Delta-G solvation = 23.444159 kcal Electronic energy + Delta-G solvation = -14509.527207 eV Core-core repulsion = 11947.368708 eV Total energy + Delta-G solvation = -2562.158500 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.74221 -38.27948 -34.65102 -33.41622 -32.80020 -31.55939 -28.73598 -26.13335 -24.42901 -24.29246 -22.63096 -19.08572 -17.27610 -16.84549 -16.61328 -16.07375 -15.08034 -14.78652 -14.23289 -14.03669 -13.85413 -13.34163 -12.83356 -12.22860 -12.08770 -11.40388 -11.20334 -11.07241 -10.92436 -10.59675 -10.55824 -10.27922 -10.22929 -9.36524 -9.00030 -8.95028 -8.37689 -7.56992 -6.25076 -3.88247 1.14631 1.36759 3.18798 3.28440 3.35546 3.89970 3.94709 4.21468 4.26916 4.44682 4.76246 5.04482 5.14458 5.16921 5.29406 5.52648 5.76628 5.91537 6.00731 6.14815 6.36066 6.64921 6.87477 7.26788 7.27729 7.61430 8.20450 8.41655 8.52992 9.22735 9.44574 10.01041 10.78251 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.055936 B = 0.006752 C = 0.006506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.456082 B = 4146.174840 C = 4302.447135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.446 5.446 3 C -0.304 4.304 4 H 0.095 0.905 5 C 0.032 3.968 6 N -0.883 5.883 7 Si 0.926 3.074 8 H -0.268 1.268 9 H -0.281 1.281 10 H -0.281 1.281 11 C 0.465 3.535 12 O -0.584 6.584 13 C -0.072 4.072 14 C 0.363 3.637 15 N -0.510 5.510 16 C 0.148 3.852 17 C -0.246 4.246 18 C 0.147 3.853 19 N -0.512 5.512 20 H 0.068 0.932 21 H 0.030 0.970 22 H 0.060 0.940 23 H 0.266 0.734 24 H 0.105 0.895 25 H 0.107 0.893 26 H 0.164 0.836 27 H 0.142 0.858 28 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.409 -12.090 2.185 12.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.165 5.165 3 C -0.432 4.432 4 H 0.113 0.887 5 C -0.171 4.171 6 N -0.522 5.522 7 Si 0.753 3.247 8 H -0.193 1.193 9 H -0.207 1.207 10 H -0.207 1.207 11 C 0.251 3.749 12 O -0.468 6.468 13 C -0.114 4.114 14 C 0.096 3.904 15 N -0.223 5.223 16 C -0.018 4.018 17 C -0.268 4.268 18 C -0.019 4.019 19 N -0.226 5.226 20 H 0.086 0.914 21 H 0.049 0.951 22 H 0.078 0.922 23 H 0.076 0.924 24 H 0.123 0.877 25 H 0.125 0.875 26 H 0.181 0.819 27 H 0.160 0.840 28 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.202 -11.174 2.080 11.367 hybrid contribution 0.896 0.123 -0.023 0.904 sum 1.098 -11.051 2.057 11.294 Atomic orbital electron populations 1.21588 0.81267 0.98330 1.02619 1.43462 1.05432 1.04419 1.63218 1.19619 1.03186 0.84950 1.35462 0.88723 1.25394 0.96618 1.00190 0.94889 1.69950 1.20349 1.30103 1.31804 0.85863 0.79213 0.81471 0.78145 1.19275 1.20736 1.20689 1.19603 0.87831 0.84065 0.83402 1.90532 1.13967 1.87001 1.55343 1.20476 0.95994 0.90073 1.04902 1.22566 0.92001 0.92639 0.83236 1.68236 1.12628 1.10640 1.30829 1.23175 0.90210 0.89926 0.98523 1.22792 1.04462 1.04294 0.95233 1.23160 0.90296 0.89877 0.98585 1.68220 1.12748 1.11037 1.30552 0.91394 0.95124 0.92158 0.92356 0.87723 0.87481 0.81873 0.83979 0.81898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.37 8.62 59.85 0.52 2.89 15 2 N -0.45 -11.81 3.00 -122.19 -0.37 -12.18 15 3 C -0.30 -8.74 9.15 -14.93 -0.14 -8.88 15 4 H 0.10 2.86 7.52 -52.49 -0.39 2.46 15 5 C 0.03 0.87 5.18 -17.47 -0.09 0.78 15 6 N -0.88 -24.01 10.88 55.50 0.60 -23.40 15 7 Si 0.93 21.26 29.56 -169.99 -5.03 16.24 15 8 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 11 C 0.46 11.95 7.62 -10.99 -0.08 11.87 15 12 O -0.58 -17.25 15.79 5.55 0.09 -17.16 15 13 C -0.07 -1.45 4.60 -29.04 -0.13 -1.59 15 14 C 0.36 7.20 6.14 -157.19 -0.96 6.23 15 15 N -0.51 -9.59 10.33 -10.73 -0.11 -9.70 15 16 C 0.15 2.12 11.30 -17.21 -0.19 1.92 15 17 C -0.25 -3.00 10.17 -39.32 -0.40 -3.40 15 18 C 0.15 2.07 11.30 -17.20 -0.19 1.88 15 19 N -0.51 -9.44 10.33 -10.72 -0.11 -9.55 15 20 H 0.07 1.60 7.19 -51.93 -0.37 1.22 15 21 H 0.03 0.55 6.23 -51.93 -0.32 0.23 15 22 H 0.06 1.39 7.69 -51.93 -0.40 0.99 15 23 H 0.27 6.83 8.31 -40.82 -0.34 6.49 15 24 H 0.10 1.84 7.42 -51.93 -0.39 1.45 15 25 H 0.11 1.96 8.11 -51.93 -0.42 1.54 15 26 H 0.16 1.69 8.06 -52.49 -0.42 1.26 15 27 H 0.14 1.14 8.06 -52.49 -0.42 0.72 15 28 H 0.16 1.63 8.06 -52.48 -0.42 1.21 15 LS Contribution 251.96 15.07 3.80 3.80 Total: -1.00 -34.83 251.96 -5.51 -40.34 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -2.70 Total: -0.09 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: -1.68 Total: 11.71 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.02 Total: -54.83 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.09 Total: -17.16 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -34.83 -5.51 -40.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177373828.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.781 kcal (2) G-P(sol) polarization free energy of solvation -34.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds