Wall clock time and date at job start Sun Mar 29 2020 21:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37102 * 119.99957 * 2 1 4 4 H 1.07997 * 120.00181 * 151.15123 * 3 2 1 5 5 C 1.38952 * 119.99942 * 331.15167 * 3 2 1 6 6 N 1.31410 * 119.99779 * 350.46928 * 5 3 2 7 7 Si 1.86790 * 120.00125 * 170.47366 * 5 3 2 8 8 H 1.48509 * 109.47336 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47556 * 119.99967 * 7 5 3 10 10 H 1.48505 * 109.47379 * 240.00298 * 7 5 3 11 11 C 1.34776 * 120.00142 * 179.72134 * 2 1 3 12 12 O 1.21292 * 119.99975 * 180.02562 * 11 2 1 13 13 C 1.50697 * 120.00111 * 0.02562 * 11 2 1 14 14 C 1.50697 * 109.47207 * 180.02562 * 13 11 2 15 15 N 1.31799 * 119.12283 * 269.72309 * 14 13 11 16 16 C 1.32329 * 120.81823 * 179.75722 * 15 14 13 17 17 C 1.38595 * 119.10669 * 0.51598 * 16 15 14 18 18 C 1.38599 * 118.39695 * 359.74286 * 17 16 15 19 19 N 1.31796 * 119.12418 * 90.00280 * 14 13 11 20 20 H 1.09005 * 109.46781 * 84.13353 * 1 2 3 21 21 H 1.08999 * 109.47235 * 204.12293 * 1 2 3 22 22 H 1.08997 * 109.47401 * 324.13048 * 1 2 3 23 23 H 0.97002 * 120.00117 * 179.97438 * 6 5 3 24 24 H 1.09007 * 109.46723 * 299.99814 * 13 11 2 25 25 H 1.08999 * 109.47367 * 59.99741 * 13 11 2 26 26 H 1.08002 * 120.44840 * 180.23177 * 16 15 14 27 27 H 1.07996 * 120.80356 * 179.77425 * 17 16 15 28 28 H 1.08003 * 120.44671 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1299 1.2454 0.4513 5 6 1.5850 2.3160 -0.5806 6 7 0.4848 2.2082 -1.2910 7 14 2.3889 3.9864 -0.3515 8 1 3.6075 3.8390 0.4844 9 1 2.7618 4.5424 -1.6770 10 1 1.4365 4.9062 0.3209 11 6 2.1389 -1.1672 0.0057 12 8 3.3518 -1.1671 0.0061 13 6 1.3855 -2.4723 0.0114 14 6 2.3648 -3.6176 0.0178 15 7 2.7783 -4.1144 -1.1309 16 6 3.6414 -5.1169 -1.1645 17 6 4.1017 -5.6506 0.0289 18 6 3.6399 -5.1051 1.2164 19 7 2.7807 -4.0996 1.1718 20 1 -0.3633 0.1050 -1.0223 21 1 -0.3634 -0.9379 0.4200 22 1 -0.3634 0.8327 0.6021 23 1 0.0898 2.9962 -1.6960 24 1 0.7585 -2.5258 0.9015 25 1 0.7591 -2.5342 -0.8785 26 1 3.9791 -5.5169 -2.1092 27 1 4.8035 -6.4714 0.0334 28 1 3.9771 -5.4951 2.1654 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177373828.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:07 Heat of formation + Delta-G solvation = -1.996743 kcal Electronic energy + Delta-G solvation = -14510.630408 eV Core-core repulsion = 11947.368708 eV Total energy + Delta-G solvation = -2563.261700 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.96822 -40.21269 -36.68410 -34.62269 -34.23058 -33.52645 -30.24281 -28.04284 -26.34515 -25.41758 -24.02541 -20.91895 -18.92027 -18.50933 -18.03267 -17.69695 -16.69746 -16.22824 -16.03433 -15.77650 -15.38147 -14.42563 -14.37396 -13.97697 -13.87494 -13.28610 -13.06513 -12.91326 -12.71604 -12.33520 -12.11900 -11.81314 -11.73564 -11.04344 -10.67466 -10.23860 -10.16865 -9.64075 -8.32005 -6.04837 -0.02332 0.25948 1.35755 1.39885 1.54128 1.99215 2.26138 2.66968 3.00736 3.07153 3.25997 3.34342 3.81608 4.02077 4.20340 4.28724 4.40748 4.43965 4.58361 4.75914 4.93669 5.02973 5.39940 5.44424 5.51756 6.09342 6.16427 6.47628 7.14705 7.19635 7.42306 7.98924 8.69448 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.055936 B = 0.006752 C = 0.006506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.456082 B = 4146.174840 C = 4302.447135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.461 5.461 3 C -0.345 4.345 4 H 0.065 0.935 5 C 0.000 4.000 6 N -0.895 5.895 7 Si 0.991 3.009 8 H -0.275 1.275 9 H -0.275 1.275 10 H -0.262 1.262 11 C 0.454 3.546 12 O -0.632 6.632 13 C -0.060 4.060 14 C 0.329 3.671 15 N -0.544 5.544 16 C 0.130 3.870 17 C -0.219 4.219 18 C 0.131 3.869 19 N -0.541 5.541 20 H 0.055 0.945 21 H 0.075 0.925 22 H 0.048 0.952 23 H 0.274 0.726 24 H 0.127 0.873 25 H 0.120 0.880 26 H 0.200 0.800 27 H 0.194 0.806 28 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.610 -13.324 2.317 13.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.180 5.180 3 C -0.473 4.473 4 H 0.083 0.917 5 C -0.202 4.202 6 N -0.534 5.534 7 Si 0.814 3.186 8 H -0.200 1.200 9 H -0.201 1.201 10 H -0.187 1.187 11 C 0.243 3.757 12 O -0.520 6.520 13 C -0.101 4.101 14 C 0.061 3.939 15 N -0.259 5.259 16 C -0.035 4.035 17 C -0.240 4.240 18 C -0.034 4.034 19 N -0.255 5.255 20 H 0.074 0.926 21 H 0.093 0.907 22 H 0.067 0.933 23 H 0.084 0.916 24 H 0.145 0.855 25 H 0.138 0.862 26 H 0.217 0.783 27 H 0.211 0.789 28 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 0.366 -12.430 2.208 12.630 hybrid contribution 0.908 0.382 -0.083 0.989 sum 1.274 -12.047 2.126 12.299 Atomic orbital electron populations 1.21579 0.79117 1.00267 1.01973 1.43750 1.06891 1.04266 1.63075 1.19559 1.03118 0.87022 1.37592 0.91675 1.26152 0.97045 1.03076 0.93942 1.70020 1.20685 1.31395 1.31267 0.84924 0.78310 0.77162 0.78192 1.20009 1.20057 1.18680 1.20535 0.87685 0.85675 0.81836 1.90472 1.16305 1.88017 1.57208 1.20317 0.96000 0.87336 1.06459 1.22367 0.93585 0.93668 0.84268 1.68168 1.14383 1.12510 1.30802 1.23934 0.89374 0.89028 1.01162 1.23317 1.03116 1.04024 0.93516 1.23955 0.89342 0.88884 1.01206 1.68162 1.14349 1.12785 1.30231 0.92628 0.90674 0.93263 0.91627 0.85532 0.86205 0.78316 0.78901 0.78074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 5.10 8.62 127.77 1.10 6.20 15 2 N -0.46 -25.02 3.00 -658.89 -1.98 -27.00 15 3 C -0.34 -20.50 9.15 84.04 0.77 -19.73 15 4 H 0.07 4.16 7.52 -2.91 -0.02 4.13 15 5 C 0.00 -0.01 5.18 84.93 0.44 0.43 15 6 N -0.90 -48.68 10.88 21.66 0.24 -48.45 15 7 Si 0.99 43.79 29.56 68.60 2.03 45.82 15 8 H -0.28 -12.38 7.11 99.48 0.71 -11.68 15 9 H -0.28 -11.84 7.11 99.48 0.71 -11.14 15 10 H -0.26 -10.76 7.11 99.48 0.71 -10.05 15 11 C 0.45 24.00 7.62 87.66 0.67 24.67 15 12 O -0.63 -38.85 15.79 -3.07 -0.05 -38.90 15 13 C -0.06 -2.40 4.60 29.10 0.13 -2.27 15 14 C 0.33 13.01 6.14 138.75 0.85 13.86 15 15 N -0.54 -20.16 10.33 -187.85 -1.94 -22.10 15 16 C 0.13 3.42 11.30 84.70 0.96 4.37 15 17 C -0.22 -4.54 10.17 22.44 0.23 -4.31 15 18 C 0.13 3.35 11.30 84.70 0.96 4.31 15 19 N -0.54 -19.51 10.33 -187.84 -1.94 -21.45 15 20 H 0.06 2.62 7.19 -2.38 -0.02 2.60 15 21 H 0.07 2.64 6.23 -2.39 -0.01 2.63 15 22 H 0.05 2.28 7.69 -2.39 -0.02 2.26 15 23 H 0.27 13.84 8.31 -92.71 -0.77 13.07 15 24 H 0.13 4.36 7.42 -2.38 -0.02 4.34 15 25 H 0.12 4.38 8.11 -2.39 -0.02 4.36 15 26 H 0.20 3.48 8.06 -2.91 -0.02 3.46 15 27 H 0.19 1.96 8.06 -2.91 -0.02 1.93 15 28 H 0.20 3.30 8.06 -2.91 -0.02 3.28 15 Total: -1.00 -78.97 251.96 3.64 -75.34 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 1.17 Total: 9.20 kcal Atomic # 6 Polarization: 21.43 SS G_CDS: 6.11 Total: 27.54 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -5.62 Total: -119.01 kcal Atomic # 8 Polarization: -38.85 SS G_CDS: -0.05 Total: -38.90 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -78.97 3.64 -75.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177373828.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.339 kcal (2) G-P(sol) polarization free energy of solvation -78.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds