Wall clock time and date at job start Sun Mar 29 2020 21:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37165 * 119.99711 * 2 1 4 4 H 1.08003 * 119.99627 * 137.82674 * 3 2 1 5 5 C 1.38886 * 120.00411 * 317.82462 * 3 2 1 6 6 N 1.31469 * 120.00131 * 166.83749 * 5 3 2 7 7 Si 1.86804 * 119.99696 * 346.84038 * 5 3 2 8 8 H 1.48489 * 109.47048 * 89.62073 * 7 5 3 9 9 H 1.48504 * 109.46752 * 209.62182 * 7 5 3 10 10 H 1.48499 * 109.46866 * 329.61818 * 7 5 3 11 11 C 1.34778 * 120.00242 * 180.02562 * 2 1 3 12 12 O 1.21576 * 119.99955 * 179.97438 * 11 2 1 13 13 N 1.34769 * 119.99628 * 0.02562 * 11 2 1 14 14 C 1.39367 * 120.00016 * 184.97132 * 13 11 2 15 15 C 1.39049 * 119.70263 * 174.62174 * 14 13 11 16 16 C 1.38348 * 119.10570 * 180.02562 * 15 14 13 17 17 C 1.38853 * 118.49227 * 0.02562 * 16 15 14 18 18 C 1.38062 * 119.31482 * 0.26743 * 17 16 15 19 19 N 1.31940 * 120.84732 * 359.43260 * 18 17 16 20 20 H 1.09000 * 109.47042 * 264.19974 * 1 2 3 21 21 H 1.09001 * 109.47320 * 24.19864 * 1 2 3 22 22 H 1.09003 * 109.47064 * 144.20550 * 1 2 3 23 23 H 0.97003 * 119.99720 * 179.97438 * 6 5 3 24 24 H 0.96995 * 120.00619 * 4.96767 * 13 11 2 25 25 H 1.08006 * 120.44634 * 0.04878 * 15 14 13 26 26 H 1.08001 * 120.75341 * 180.02562 * 16 15 14 27 27 H 1.07996 * 120.33796 * 180.02562 * 17 16 15 28 28 H 1.08002 * 119.57544 * 179.72355 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1508 1.1879 0.0000 4 1 3.0211 1.3090 0.6280 5 6 1.7260 2.2350 -0.8075 6 7 2.2101 3.4437 -0.6254 7 14 0.4670 1.9259 -2.1524 8 1 -0.8999 2.1127 -1.6031 9 1 0.6878 2.8827 -3.2665 10 1 0.6123 0.5368 -2.6567 11 6 2.1389 -1.1672 -0.0005 12 8 3.3547 -1.1671 -0.0010 13 7 1.4651 -2.3343 -0.0016 14 6 2.1579 -3.5391 0.1025 15 6 1.4525 -4.7321 0.2138 16 6 2.1527 -5.9209 0.3169 17 6 3.5404 -5.8753 0.3056 18 6 4.1758 -4.6542 0.1984 19 7 3.4815 -3.5370 0.0957 20 1 -0.3633 -0.1039 1.0224 21 1 -0.3634 0.9374 -0.4212 22 1 -0.3633 -0.8336 -0.6011 23 1 1.9137 4.1750 -1.1897 24 1 0.4979 -2.3359 -0.0747 25 1 0.3724 -4.7309 0.2193 26 1 1.6318 -6.8629 0.4042 27 1 4.1168 -6.7852 0.3839 28 1 5.2550 -4.6135 0.1937 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191317956.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:13 Heat of formation + Delta-G solvation = 49.120535 kcal Electronic energy + Delta-G solvation = -14669.937795 eV Core-core repulsion = 12108.892706 eV Total energy + Delta-G solvation = -2561.045088 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.31074 -38.69116 -35.09077 -34.09242 -32.14478 -31.90854 -29.56282 -26.52530 -25.05431 -23.46068 -22.55775 -19.74494 -18.13782 -17.01655 -16.71650 -15.97181 -15.57237 -15.31375 -14.74626 -14.08431 -13.65948 -13.42811 -12.88143 -12.68461 -12.52466 -12.40452 -11.81838 -11.77568 -10.89107 -10.35559 -10.27514 -9.88797 -9.61278 -9.44317 -8.96464 -8.40131 -7.92515 -7.63766 -6.30131 -3.98008 1.40052 1.59207 3.02819 3.23532 3.24803 3.30768 3.95888 4.17774 4.43751 4.64558 4.89080 4.99617 5.13384 5.26001 5.30458 5.45476 5.64608 5.88006 6.01673 6.09407 6.20061 6.35195 6.64073 7.02915 7.29606 7.74545 8.31410 8.44014 8.83046 9.04072 9.34864 9.90299 10.81903 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.055491 B = 0.007650 C = 0.007119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.463219 B = 3659.166133 C = 3932.129652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.492 5.492 3 C -0.296 4.296 4 H 0.105 0.895 5 C 0.055 3.945 6 N -0.876 5.876 7 Si 0.890 3.110 8 H -0.275 1.275 9 H -0.289 1.289 10 H -0.268 1.268 11 C 0.656 3.344 12 O -0.535 6.535 13 N -0.677 5.677 14 C 0.395 3.605 15 C -0.228 4.228 16 C -0.048 4.048 17 C -0.229 4.229 18 C 0.135 3.865 19 N -0.471 5.471 20 H 0.051 0.949 21 H 0.072 0.928 22 H 0.045 0.955 23 H 0.273 0.727 24 H 0.404 0.596 25 H 0.130 0.870 26 H 0.131 0.869 27 H 0.128 0.872 28 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.735 -15.917 0.586 16.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.220 5.220 3 C -0.424 4.424 4 H 0.122 0.878 5 C -0.149 4.149 6 N -0.513 5.513 7 Si 0.718 3.282 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.193 1.193 11 C 0.359 3.641 12 O -0.407 6.407 13 N -0.326 5.326 14 C 0.161 3.839 15 C -0.252 4.252 16 C -0.074 4.074 17 C -0.251 4.251 18 C -0.024 4.024 19 N -0.186 5.186 20 H 0.069 0.931 21 H 0.090 0.910 22 H 0.063 0.937 23 H 0.084 0.916 24 H 0.241 0.759 25 H 0.148 0.852 26 H 0.148 0.852 27 H 0.146 0.854 28 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.426 -14.689 0.457 15.348 hybrid contribution -1.783 -0.801 -0.735 2.088 sum -6.209 -15.490 -0.278 16.690 Atomic orbital electron populations 1.22028 0.83933 1.01626 1.00693 1.42958 1.03417 1.04105 1.71518 1.18919 1.13650 0.85622 1.24230 0.87777 1.25434 0.97769 0.95181 0.96553 1.69683 1.43434 0.99579 1.38602 0.86822 0.80464 0.78718 0.82158 1.20271 1.21625 1.19282 1.16415 0.86112 0.79722 0.81853 1.90913 1.10640 1.84375 1.54785 1.43320 1.10007 1.03857 1.75414 1.18385 0.88941 0.85085 0.91497 1.21383 1.00693 0.92052 1.11085 1.21216 0.94136 0.97398 0.94668 1.21929 0.95241 0.99443 1.08480 1.22726 1.00218 0.86950 0.92492 1.67858 1.05862 1.30101 1.14783 0.93065 0.90957 0.93667 0.91644 0.75885 0.85218 0.85157 0.85393 0.82924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.18 8.59 59.85 0.51 1.70 15 2 N -0.49 -12.26 2.54 -127.62 -0.32 -12.58 15 3 C -0.30 -8.63 9.34 -14.93 -0.14 -8.77 15 4 H 0.10 3.40 8.00 -52.48 -0.42 2.98 15 5 C 0.06 1.56 5.39 -17.47 -0.09 1.47 15 6 N -0.88 -25.95 13.96 55.49 0.77 -25.18 15 7 Si 0.89 20.98 24.84 -169.99 -4.22 16.76 15 8 H -0.28 -5.92 6.56 56.52 0.37 -5.55 15 9 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 11 C 0.66 16.30 8.19 -86.92 -0.71 15.59 15 12 O -0.53 -15.54 14.53 5.30 0.08 -15.46 15 13 N -0.68 -13.04 5.27 -15.82 -0.08 -13.12 15 14 C 0.39 7.22 7.42 -154.73 -1.15 6.07 15 15 C -0.23 -3.07 9.94 -39.24 -0.39 -3.46 15 16 C -0.05 -0.55 10.17 -39.31 -0.40 -0.95 15 17 C -0.23 -2.77 10.11 -39.42 -0.40 -3.16 15 18 C 0.14 2.09 11.17 -17.57 -0.20 1.90 15 19 N -0.47 -9.60 7.89 -12.37 -0.10 -9.69 15 20 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 21 H 0.07 1.49 3.37 -51.93 -0.18 1.31 15 22 H 0.04 0.71 6.61 -51.93 -0.34 0.37 15 23 H 0.27 7.48 8.31 -40.82 -0.34 7.15 15 24 H 0.40 6.12 6.52 -40.82 -0.27 5.85 15 25 H 0.13 1.34 8.06 -52.48 -0.42 0.92 15 26 H 0.13 1.04 8.06 -52.49 -0.42 0.62 15 27 H 0.13 1.13 8.06 -52.49 -0.42 0.71 15 28 H 0.15 1.98 8.06 -52.49 -0.42 1.56 15 LS Contribution 243.30 15.07 3.67 3.67 Total: -1.00 -35.59 243.30 -5.66 -41.25 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -2.48 Total: 3.97 kcal Atomic # 6 Polarization: 13.35 SS G_CDS: -2.96 Total: 10.38 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: 0.27 Total: -60.57 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: 0.08 Total: -15.46 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.22 Total: 16.76 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -35.59 -5.66 -41.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191317956.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.373 kcal (2) G-P(sol) polarization free energy of solvation -35.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds