Wall clock time and date at job start Sun Mar 29 2020 21:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37165 * 119.99711 * 2 1 4 4 H 1.08003 * 119.99627 * 137.82674 * 3 2 1 5 5 C 1.38886 * 120.00411 * 317.82462 * 3 2 1 6 6 N 1.31469 * 120.00131 * 166.83749 * 5 3 2 7 7 Si 1.86804 * 119.99696 * 346.84038 * 5 3 2 8 8 H 1.48489 * 109.47048 * 89.62073 * 7 5 3 9 9 H 1.48504 * 109.46752 * 209.62182 * 7 5 3 10 10 H 1.48499 * 109.46866 * 329.61818 * 7 5 3 11 11 C 1.34778 * 120.00242 * 180.02562 * 2 1 3 12 12 O 1.21576 * 119.99955 * 179.97438 * 11 2 1 13 13 N 1.34769 * 119.99628 * 0.02562 * 11 2 1 14 14 C 1.39367 * 120.00016 * 184.97132 * 13 11 2 15 15 C 1.39049 * 119.70263 * 174.62174 * 14 13 11 16 16 C 1.38348 * 119.10570 * 180.02562 * 15 14 13 17 17 C 1.38853 * 118.49227 * 0.02562 * 16 15 14 18 18 C 1.38062 * 119.31482 * 0.26743 * 17 16 15 19 19 N 1.31940 * 120.84732 * 359.43260 * 18 17 16 20 20 H 1.09000 * 109.47042 * 264.19974 * 1 2 3 21 21 H 1.09001 * 109.47320 * 24.19864 * 1 2 3 22 22 H 1.09003 * 109.47064 * 144.20550 * 1 2 3 23 23 H 0.97003 * 119.99720 * 179.97438 * 6 5 3 24 24 H 0.96995 * 120.00619 * 4.96767 * 13 11 2 25 25 H 1.08006 * 120.44634 * 0.04878 * 15 14 13 26 26 H 1.08001 * 120.75341 * 180.02562 * 16 15 14 27 27 H 1.07996 * 120.33796 * 180.02562 * 17 16 15 28 28 H 1.08002 * 119.57544 * 179.72355 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1508 1.1879 0.0000 4 1 3.0211 1.3090 0.6280 5 6 1.7260 2.2350 -0.8075 6 7 2.2101 3.4437 -0.6254 7 14 0.4670 1.9259 -2.1524 8 1 -0.8999 2.1127 -1.6031 9 1 0.6878 2.8827 -3.2665 10 1 0.6123 0.5368 -2.6567 11 6 2.1389 -1.1672 -0.0005 12 8 3.3547 -1.1671 -0.0010 13 7 1.4651 -2.3343 -0.0016 14 6 2.1579 -3.5391 0.1025 15 6 1.4525 -4.7321 0.2138 16 6 2.1527 -5.9209 0.3169 17 6 3.5404 -5.8753 0.3056 18 6 4.1758 -4.6542 0.1984 19 7 3.4815 -3.5370 0.0957 20 1 -0.3633 -0.1039 1.0224 21 1 -0.3634 0.9374 -0.4212 22 1 -0.3633 -0.8336 -0.6011 23 1 1.9137 4.1750 -1.1897 24 1 0.4979 -2.3359 -0.0747 25 1 0.3724 -4.7309 0.2193 26 1 1.6318 -6.8629 0.4042 27 1 4.1168 -6.7852 0.3839 28 1 5.2550 -4.6135 0.1937 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191317956.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:12 Heat of formation + Delta-G solvation = 22.236190 kcal Electronic energy + Delta-G solvation = -14671.103587 eV Core-core repulsion = 12108.892706 eV Total energy + Delta-G solvation = -2562.210881 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.72119 -40.24147 -36.88976 -35.77579 -34.04521 -33.21002 -30.83838 -28.24670 -26.92970 -24.63766 -23.89129 -21.40256 -19.69467 -19.00828 -18.24104 -17.54681 -16.94402 -16.52945 -16.41084 -15.49514 -15.14544 -15.01386 -14.54845 -14.38030 -14.10813 -13.82890 -13.52483 -12.79487 -12.72807 -12.22173 -11.88479 -11.67193 -11.22502 -10.88531 -10.71945 -9.87327 -9.72167 -9.11339 -8.46236 -6.20327 0.28239 0.55286 1.18844 1.34219 1.44786 1.81993 2.19260 2.30203 2.92888 3.12281 3.20763 3.74571 4.04509 4.18302 4.25654 4.33150 4.45829 4.53184 4.72421 4.89374 5.09120 5.35653 5.46473 5.49437 5.83899 6.00178 6.12599 6.76322 6.95291 7.20442 7.50511 8.01355 8.70867 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.055491 B = 0.007650 C = 0.007119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.463219 B = 3659.166133 C = 3932.129652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.505 5.505 3 C -0.315 4.315 4 H 0.039 0.961 5 C 0.003 3.997 6 N -0.924 5.924 7 Si 0.968 3.032 8 H -0.230 1.230 9 H -0.292 1.292 10 H -0.264 1.264 11 C 0.655 3.345 12 O -0.595 6.595 13 N -0.664 5.664 14 C 0.348 3.652 15 C -0.207 4.207 16 C -0.042 4.042 17 C -0.204 4.204 18 C 0.103 3.897 19 N -0.538 5.538 20 H 0.077 0.923 21 H 0.065 0.935 22 H 0.089 0.911 23 H 0.280 0.720 24 H 0.424 0.576 25 H 0.168 0.832 26 H 0.181 0.819 27 H 0.168 0.832 28 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.066 -19.409 -0.251 21.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.233 5.233 3 C -0.444 4.444 4 H 0.057 0.943 5 C -0.197 4.197 6 N -0.562 5.562 7 Si 0.791 3.209 8 H -0.154 1.154 9 H -0.220 1.220 10 H -0.189 1.189 11 C 0.357 3.643 12 O -0.472 6.472 13 N -0.316 5.316 14 C 0.116 3.884 15 C -0.231 4.231 16 C -0.068 4.068 17 C -0.225 4.225 18 C -0.055 4.055 19 N -0.254 5.254 20 H 0.096 0.904 21 H 0.083 0.917 22 H 0.108 0.892 23 H 0.089 0.911 24 H 0.264 0.736 25 H 0.186 0.814 26 H 0.199 0.801 27 H 0.186 0.814 28 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.806 -18.252 -0.348 19.855 hybrid contribution -0.622 0.103 -0.374 0.733 sum -8.428 -18.149 -0.723 20.023 Atomic orbital electron populations 1.22278 0.80102 1.03015 1.03389 1.42958 1.05649 1.02789 1.71896 1.18476 1.13137 0.88194 1.24564 0.94335 1.26312 1.00613 0.94135 0.98659 1.69830 1.45683 1.00823 1.39911 0.85611 0.79289 0.78360 0.77638 1.15436 1.21974 1.18868 1.16623 0.85650 0.81064 0.80955 1.90857 1.13488 1.85707 1.57143 1.42818 1.10687 1.02581 1.75544 1.18788 0.88978 0.85863 0.94744 1.21781 1.02526 0.90521 1.08267 1.21854 0.93871 0.98595 0.92474 1.22372 0.96230 0.99220 1.04676 1.23021 1.00804 0.87505 0.94148 1.67599 1.07938 1.33216 1.16610 0.90413 0.91711 0.89242 0.91080 0.73555 0.81441 0.80133 0.81424 0.82359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.95 8.59 127.77 1.10 3.05 15 2 N -0.50 -25.56 2.54 -675.93 -1.72 -27.28 15 3 C -0.31 -19.39 9.34 84.01 0.79 -18.61 15 4 H 0.04 2.79 8.00 -2.91 -0.02 2.77 15 5 C 0.00 0.20 5.39 84.90 0.46 0.66 15 6 N -0.92 -57.04 13.96 21.66 0.30 -56.73 15 7 Si 0.97 42.87 24.84 68.60 1.70 44.57 15 8 H -0.23 -8.52 6.56 99.48 0.65 -7.87 15 9 H -0.29 -13.02 7.11 99.48 0.71 -12.31 15 10 H -0.26 -11.47 7.11 99.48 0.71 -10.77 15 11 C 0.65 33.51 8.19 179.06 1.47 34.97 15 12 O -0.60 -36.93 14.53 -3.96 -0.06 -36.99 15 13 N -0.66 -25.01 5.27 -322.23 -1.70 -26.71 15 14 C 0.35 12.39 7.42 132.93 0.99 13.37 15 15 C -0.21 -4.74 9.94 22.49 0.22 -4.52 15 16 C -0.04 -0.75 10.17 22.44 0.23 -0.52 15 17 C -0.20 -4.16 10.11 22.38 0.23 -3.94 15 18 C 0.10 3.14 11.17 84.63 0.95 4.09 15 19 N -0.54 -22.44 7.89 -193.06 -1.52 -23.96 15 20 H 0.08 2.39 8.14 -2.39 -0.02 2.37 15 21 H 0.06 2.45 3.37 -2.39 -0.01 2.44 15 22 H 0.09 2.42 6.61 -2.39 -0.02 2.40 15 23 H 0.28 15.76 8.31 -92.71 -0.77 14.99 15 24 H 0.42 11.61 6.52 -92.71 -0.60 11.00 15 25 H 0.17 2.47 8.06 -2.91 -0.02 2.45 15 26 H 0.18 1.48 8.06 -2.91 -0.02 1.45 15 27 H 0.17 2.07 8.06 -2.91 -0.02 2.05 15 28 H 0.16 4.26 8.06 -2.91 -0.02 4.23 15 Total: -1.00 -87.29 243.30 3.96 -83.33 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.53 Total: 15.20 kcal Atomic # 6 Polarization: 22.15 SS G_CDS: 6.42 Total: 28.57 kcal Atomic # 7 Polarization: -130.05 SS G_CDS: -4.64 Total: -134.68 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -0.06 Total: -36.99 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.70 Total: 44.57 kcal Total: -87.29 3.96 -83.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191317956.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.565 kcal (2) G-P(sol) polarization free energy of solvation -87.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds