Wall clock time and date at job start Sun Mar 29 2020 21:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00081 * 2 1 4 4 H 1.48494 * 109.47314 * 270.00261 * 3 2 1 5 5 H 1.48503 * 109.46875 * 30.00302 * 3 2 1 6 6 H 1.48500 * 109.46679 * 150.00309 * 3 2 1 7 7 C 1.37880 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99777 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00020 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47316 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47309 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47499 * 180.02562 * 11 10 9 13 13 C 1.34773 * 120.00375 * 180.02562 * 12 11 10 14 14 O 1.21716 * 119.99816 * 359.97438 * 13 12 11 15 15 C 1.46267 * 120.00129 * 180.02562 * 13 12 11 16 16 C 1.35118 * 126.72414 * 179.68786 * 15 13 12 17 17 C 1.45716 * 110.36422 * 180.25905 * 16 15 13 18 18 C 1.33198 * 110.83923 * 359.97438 * 17 16 15 19 19 C 1.51197 * 107.14403 * 359.97438 * 18 17 16 20 20 H 0.97000 * 120.00079 * 359.97438 * 1 2 3 21 21 H 1.09009 * 109.46751 * 60.00008 * 9 7 2 22 22 H 1.09002 * 109.47403 * 300.00189 * 9 7 2 23 23 H 1.09004 * 109.46942 * 60.00703 * 10 9 7 24 24 H 1.09002 * 109.47532 * 300.00152 * 10 9 7 25 25 H 1.09004 * 109.46624 * 60.00411 * 11 10 9 26 26 H 1.09002 * 109.47327 * 300.00189 * 11 10 9 27 27 H 0.97003 * 119.99790 * 359.97438 * 12 11 10 28 28 H 1.08004 * 124.81931 * 0.25445 * 16 15 13 29 29 H 1.08004 * 124.57966 * 179.97438 * 17 16 15 30 30 H 1.08002 * 126.42640 * 179.97438 * 18 17 16 31 31 H 1.09001 * 110.31847 * 241.09711 * 19 18 17 32 32 H 1.08997 * 110.40152 * 118.94906 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5515 -2.6367 -0.0009 12 7 6.0399 -4.0178 -0.0014 13 6 7.3649 -4.2641 -0.0010 14 8 8.1559 -3.3390 -0.0006 15 6 7.8525 -5.6432 -0.0020 16 6 9.1428 -6.0439 -0.0076 17 6 9.2219 -7.4989 -0.0129 18 6 8.0046 -8.0396 -0.0103 19 6 7.0108 -6.9002 -0.0020 20 1 -0.4850 0.8400 0.0004 21 1 3.8752 -0.6805 0.8889 22 1 3.8746 -0.6801 -0.8911 23 1 3.6579 -3.1506 -0.8908 24 1 3.6585 -3.1503 0.8892 25 1 5.9148 -2.1228 0.8891 26 1 5.9149 -2.1229 -0.8909 27 1 5.4095 -4.7551 -0.0014 28 1 9.9947 -5.3801 -0.0082 29 1 10.1431 -8.0628 -0.0183 30 1 7.7712 -9.0941 -0.0134 31 1 6.3932 -6.9431 0.8951 32 1 6.3849 -6.9354 -0.8937 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199695395.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:22 Heat of formation + Delta-G solvation = -13.752854 kcal Electronic energy + Delta-G solvation = -13936.193396 eV Core-core repulsion = 11475.962256 eV Total energy + Delta-G solvation = -2460.231140 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.06291 -38.23384 -35.51143 -33.32322 -31.54464 -29.61855 -28.31532 -27.01517 -23.47495 -21.79480 -20.55254 -19.56169 -18.70901 -17.45761 -16.72572 -15.71698 -15.49409 -14.85199 -14.56269 -14.11561 -13.65670 -13.29521 -12.75799 -12.65382 -12.15901 -12.01826 -11.91547 -11.76962 -11.08937 -10.90161 -10.49867 -10.24927 -9.99449 -9.80085 -9.62655 -9.23620 -8.97471 -8.64601 -8.56043 -6.06998 -4.05777 0.66429 2.37023 3.31153 3.36055 3.39002 3.40313 3.43209 4.27500 4.42554 4.44078 4.77479 5.00114 5.27143 5.27628 5.28653 5.44325 5.54844 5.64997 5.97316 5.98369 6.01636 6.15081 6.34035 6.43598 6.51734 6.69373 6.78149 7.21958 7.35468 7.63987 7.76057 8.31861 8.49611 8.96704 9.55293 11.06231 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.063758 B = 0.004488 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.056041 B = 6237.677697 C = 6645.624515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.113 3.887 12 N -0.720 5.720 13 C 0.568 3.432 14 O -0.546 6.546 15 C -0.199 4.199 16 C -0.056 4.056 17 C -0.156 4.156 18 C -0.143 4.143 19 C -0.088 4.088 20 H 0.263 0.737 21 H 0.019 0.981 22 H 0.015 0.985 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.400 0.600 28 H 0.137 0.863 29 H 0.132 0.868 30 H 0.146 0.854 31 H 0.111 0.889 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.048 -15.244 0.010 21.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C -0.009 4.009 12 N -0.370 5.370 13 C 0.356 3.644 14 O -0.425 6.425 15 C -0.202 4.202 16 C -0.075 4.075 17 C -0.174 4.174 18 C -0.160 4.160 19 C -0.124 4.124 20 H 0.073 0.927 21 H 0.037 0.963 22 H 0.033 0.967 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.234 0.766 28 H 0.155 0.845 29 H 0.149 0.851 30 H 0.164 0.836 31 H 0.129 0.871 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 15.416 -14.424 0.012 21.112 hybrid contribution 0.051 0.521 -0.022 0.524 sum 15.467 -13.903 -0.010 20.797 Atomic orbital electron populations 1.69913 1.06320 1.26972 1.51005 1.25030 0.94751 0.99251 0.94447 0.86772 0.80409 0.83501 0.78606 1.20229 1.21355 1.18886 1.21094 0.89305 0.94513 1.51117 0.91010 1.19507 0.97273 0.91458 0.96701 1.21710 0.90573 1.01098 1.01750 1.21683 0.96169 0.81018 1.02068 1.46039 1.06432 1.10089 1.74394 1.17422 0.82596 0.87551 0.76814 1.90820 1.55600 1.45526 1.50572 1.22205 0.96436 0.93433 1.08119 1.22779 0.96634 0.94650 0.93463 1.22267 0.98505 0.93536 1.03057 1.24201 0.94705 0.98931 0.98210 1.20450 0.98434 0.90005 1.03472 0.92688 0.96276 0.96708 0.92089 0.92066 0.91646 0.91658 0.76635 0.84524 0.85053 0.83592 0.87103 0.87118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.27 4.04 -27.89 -0.11 -0.38 16 10 C -0.11 -2.11 5.27 -26.73 -0.14 -2.25 16 11 C 0.11 1.90 5.67 -4.04 -0.02 1.88 16 12 N -0.72 -10.15 5.55 -61.75 -0.34 -10.49 16 13 C 0.57 8.67 7.77 -13.04 -0.10 8.57 16 14 O -0.55 -10.48 16.88 5.17 0.09 -10.39 16 15 C -0.20 -2.35 6.33 -102.23 -0.65 -3.00 16 16 C -0.06 -0.61 10.53 -37.71 -0.40 -1.00 16 17 C -0.16 -1.29 10.74 -38.35 -0.41 -1.71 16 18 C -0.14 -1.04 11.21 -35.82 -0.40 -1.44 16 19 C -0.09 -0.72 6.08 -28.51 -0.17 -0.90 16 20 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 21 H 0.02 0.45 7.20 -51.92 -0.37 0.07 16 22 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 23 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 25 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.40 4.47 7.84 -40.82 -0.32 4.15 16 28 H 0.14 1.48 8.06 -52.48 -0.42 1.06 16 29 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 30 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 31 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 279.32 15.07 4.21 4.21 Total: -1.00 -33.24 279.32 -7.26 -40.49 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -4.48 Total: -0.52 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -2.84 Total: -13.42 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.43 Total: -37.46 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -33.24 -7.26 -40.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199695395.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.742 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds